Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:glycoprotein catabolic process
go back to main search page
Accession:GO:0006516 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
Synonyms:exact_synonym: glycoprotein breakdown;   glycoprotein catabolism;   glycoprotein degradation


show annotations for term's descendants           Sort by:
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (MGI:3654428|PMID:16431915) RGD PMID:16431915 MGI:3654428 NCBI chr13:63,858,282...63,920,538
Ensembl chr13:63,858,716...63,920,523 		JBrowse link
G Fbxo17 F-box protein 17 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,002,276...84,024,455
Ensembl chr 1:84,002,267...84,024,453 		JBrowse link
G Fbxo2 F-box protein 2 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:4821082|PMID:12140560)
PMID:21873635
(MGI:3573989|PMID:15723043)		 RGD PMID:12140560 PMID:15723043 PMID:21873635 MGI:3573989 MGI:4821082, RGD:13792537 NCBI chr 5:158,592,926...158,598,355
Ensembl chr 5:158,592,925...158,598,355 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,965,426...83,987,781
Ensembl chr 1:83,965,986...83,987,778 		JBrowse link
G Fbxo44 F-box protein 44 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:158,583,363...158,592,510
Ensembl chr 5:158,583,366...158,592,363 		JBrowse link
G Fbxo6 F-box protein 6 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:3573989|PMID:15723043)		 RGD PMID:15723043 PMID:21873635 MGI:3573989, RGD:13792537 NCBI chr 5:158,576,729...158,582,520
Ensembl chr 5:158,576,759...158,582,525 		JBrowse link
G Manba mannosidase beta involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 GO_REF:0000024
(MGI:3615066|PMID:16377659)
(MGI:57603|PMID:3447593)
PMID:21873635		 UniProt
RGD		 PMID:3447593 PMID:16377659 PMID:21873635 GO_REF:0000024 MGI:3615066 MGI:57603, RGD:13792537 NCBI chr 2:223,910,432...224,002,988
Ensembl chr 2:223,910,432...224,002,983 		JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,835,083...83,838,620
Ensembl chr 1:83,835,083...83,838,676 		JBrowse link
G Neu2 neuraminidase 2 involved_in ISO (PMID:14613940) RGD PMID:14613940 NCBI chr 9:88,218,494...88,267,356
Ensembl chr 9:88,249,135...88,267,355 		JBrowse link
G Neu4 neuraminidase 4 involved_in ISO (PMID:15213228), (PMID:15847605)
(MGI:4361102|PMID:19506080), (MGI:5427293|PMID:22393058)		 RGD PMID:15213228 PMID:15847605 PMID:19506080 PMID:22393058 MGI:4361102 MGI:5427293 NCBI chr 9:94,396,920...94,402,576
Ensembl chr 9:94,396,920...94,402,576 		JBrowse link
G Ngly1 N-glycanase 1 involved_in ISO
IBA
IEA
ISS		 (PMID:15358861)
PMID:21873635
GO_REF:0000002
(MGI:3054122|PMID:15358861)
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:15358861 PMID:21873635 GO_REF:0000002 GO_REF:0000024 MGI:3054122, RGD:13792537 NCBI chr15:9,153,738...9,210,228
Ensembl chr15:9,153,738...9,204,630 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) RGD PMID:22607976 NCBI chr 8:114,928,678...114,994,027
Ensembl chr 8:114,917,824...114,994,028 		JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within ISO (MGI:5641427|PMID:24793170) RGD PMID:24793170 MGI:5641427 NCBI chr 7:131,773,161...131,786,300
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Ctsl cathepsin L involved_in ISS
ISO		 GO_REF:0000024
(MGI:6259330|PMID:12417635)		 UniProt
RGD		 PMID:12417635 GO_REF:0000024 MGI:6259330 NCBI chr17:764,370...770,533
Ensembl chr17:764,309...770,548 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in ISO
IEA		 (PMID:29101312)
GO_REF:0000107		 RGD
Ensembl		 PMID:29101312 GO_REF:0000107 NCBI chr 8:4,581,785...4,591,687
Ensembl chr 8:4,581,785...4,599,611 		JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc1 glypican 1 involved_in ISO
ISS
IEA		 (PMID:12732622)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:12732622 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:93,396,234...93,424,047
Ensembl chr 9:93,396,234...93,424,047 		JBrowse link
G Gusb glucuronidase, beta involved_in ISO MGI:1856041 (MGI:7281718|PMID:23897660), (MGI:7284274|PMID:11273777) RGD PMID:11273777 PMID:23897660 MGI:7281718 MGI:7284274 NCBI chr12:26,701,191...26,714,718
Ensembl chr12:26,697,951...26,726,905 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO UniProtKB:Q68CP4 (MGI:3703408|PMID:16960811) RGD PMID:16960811 MGI:3703408 NCBI chr16:66,105,233...66,137,444
Ensembl chr16:66,105,181...66,136,138 		JBrowse link
G Hpse heparanase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:2449691|PMID:12460766)
(PMID:12213822)		 UniProt
Ensembl
RGD		 PMID:12213822 PMID:12460766 GO_REF:0000024 GO_REF:0000107 MGI:2449691 NCBI chr14:8,896,593...8,937,011
Ensembl chr14:8,896,593...8,937,010 		JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO MGI:3625122 (MGI:6140076|PMID:17876721) RGD PMID:17876721 MGI:6140076 NCBI chr  X:149,025,977...149,046,639
Ensembl chr  X:149,025,976...149,046,663 		JBrowse link
G Idua alpha-L-iduronidase involved_in ISO MGI:2176236|MGI:2651471 (MGI:3605936|PMID:15979918), (MGI:7310026|PMID:25854773) RGD PMID:15979918 PMID:25854773 MGI:3605936 MGI:7310026 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase involved_in ISO MGI:1934018 (MGI:1350713|PMID:10588735) RGD PMID:10588735 MGI:1350713 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase involved_in ISO (PMID:15146460)
MGI:1856041|MGI:2151181 (MGI:2151820|PMID:10561464), (MGI:7284274|PMID:11273777)		 RGD PMID:10561464 PMID:11273777 PMID:15146460 MGI:2151820 MGI:7284274 NCBI chr10:104,596,810...104,613,510
Ensembl chr10:104,598,112...104,613,486 		JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:25092655) RGD PMID:25092655 NCBI chr 4:141,797,631...141,829,717
Ensembl chr 4:141,797,701...141,829,717 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:25092655) RGD PMID:25092655 NCBI chr 3:144,201,604...144,227,423
Ensembl chr 3:144,201,605...144,227,485 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(MGI:3654428|PMID:16431915)		 RGD PMID:16431915 PMID:25092655 MGI:3654428 NCBI chr13:63,858,282...63,920,538
Ensembl chr13:63,858,716...63,920,523 		JBrowse link
G Man1a1 mannosidase, alpha, class 1A, member 1 involved_in ISO (PMID:27108681) RGD PMID:27108681 NCBI chr20:33,202,509...33,385,747
Ensembl chr20:33,202,517...33,385,824 		JBrowse link
G Man1b1 mannosidase, alpha, class 1B, member 1 involved_in ISO (PMID:18003979), (PMID:21062743) RGD PMID:18003979 PMID:21062743 NCBI chr 3:8,143,877...8,165,007
Ensembl chr 3:8,143,381...8,165,006 		JBrowse link
negative regulation of elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO (PMID:17895370) RGD PMID:17895370 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Btk Bruton tyrosine kinase IMP RGD PMID:32083858 RGD:151665122 NCBI chr  X:97,722,796...97,762,315
Ensembl chr  X:97,722,802...97,761,853 		JBrowse link
ubiquitin-dependent glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:21062743), (PMID:25092655) RGD PMID:21062743 PMID:25092655 NCBI chr 4:141,797,631...141,829,717
Ensembl chr 4:141,797,701...141,829,717 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:15537790) RGD PMID:15537790 NCBI chr 3:144,201,604...144,227,423
Ensembl chr 3:144,201,605...144,227,485 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    metabolic process 12044
      primary metabolic process 10824
        protein metabolic process 5951
          glycoprotein metabolic process 396
            glycoprotein catabolic process 30
              O-sialoglycoprotein catabolic process 0
              elastin catabolic process + 4
              mannoprotein catabolic process 0
              protein deglycosylation involved in glycoprotein catabolic process + 5
              proteoglycan catabolic process + 10
              ubiquitin-dependent glycoprotein ERAD pathway + 5
Path 2
Term Annotations click to browse term
  biological_process 19746
    metabolic process 12044
      organic substance metabolic process 11597
        macromolecule metabolic process 9959
          protein metabolic process 5951
            glycoprotein metabolic process 396
              glycoprotein catabolic process 30
                O-sialoglycoprotein catabolic process 0
                elastin catabolic process + 4
                mannoprotein catabolic process 0
                protein deglycosylation involved in glycoprotein catabolic process + 5
                proteoglycan catabolic process + 10
                ubiquitin-dependent glycoprotein ERAD pathway + 5
paths to the root