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ONTOLOGY REPORT - ANNOTATIONS


Term:glycoprotein catabolic process
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Accession:GO:0006516 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
Synonyms:exact_synonym: glycoprotein breakdown;   glycoprotein catabolism;   glycoprotein degradation


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glycoprotein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07002848.1 RGD:13792537
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 JBrowse link 13 69,135,095 69,197,708 RGD:1624291
G Fbxo17 F-box protein 17 JBrowse link 1 86,903,762 86,919,238 RGD:13792537
G Fbxo2 F-box protein 2 JBrowse link 5 164,972,483 164,977,912 RGD:1624291
RGD:13792537
G Fbxo44 F-box protein 44 JBrowse link 5 164,962,921 164,972,273 RGD:13792537
G Fbxo6 F-box protein 6 JBrowse link 5 164,956,285 164,962,075 RGD:1624291
RGD:13792537
G Manba mannosidase beta JBrowse link 2 240,668,213 240,760,264 RGD:13792537
RGD:1624291
RGD:1600115
G Nccrp1 NCCRP1, F-box associated domain containing JBrowse link 1
1
85,558,420
85,213,578
85,559,652
85,218,030
RGD:13792537
G Neu4 neuraminidase 4 JBrowse link 9 101,284,902 101,290,558 RGD:1624291
G Ngly1 N-glycanase 1 JBrowse link 15 10,405,453 10,455,973 RGD:1624291
RGD:13792537
RGD:1600115
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B JBrowse link 8 123,303,910 123,370,729 RGD:1624291
elastin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cela1 chymotrypsin like elastase 1 JBrowse link 7 142,305,337 142,318,621 RGD:1624291
RGD:1600115
G Ctsl cathepsin L JBrowse link 17 1,873,105 1,879,266 RGD:1600115
RGD:1624291
G Mmp12 matrix metallopeptidase 12 JBrowse link 8 5,594,717 5,616,494 RGD:1600115
RGD:1624291
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07030903.1 RGD:13792537
G Gpc1 glypican 1 JBrowse link 9 99,998,275 100,026,818 RGD:1600115
RGD:1624291
G Hpse heparanase JBrowse link 14 10,534,358 10,576,686 RGD:1600115
RGD:1624291
G Sgsh N-sulfoglucosamine sulfohydrolase JBrowse link 10 108,469,312 108,479,094 RGD:1624291
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 JBrowse link 4 140,886,644 140,918,654 RGD:1624291
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 JBrowse link 3 151,232,741 151,258,559 RGD:1624291
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 JBrowse link 13 69,135,095 69,197,708 RGD:1624291
G Man1b1 mannosidase, alpha, class 1B, member 1 JBrowse link 3 2,547,259 2,569,051 RGD:1624291
negative regulation of elastin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cst3 cystatin C JBrowse link 3 143,219,671 143,223,544 RGD:1624291
proteoglycan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 JBrowse link 2 61,039,072 61,340,687 RGD:1624291
ubiquitin-dependent glycoprotein ERAD pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 JBrowse link 4 140,886,644 140,918,654 RGD:1624291
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 JBrowse link 3 151,232,741 151,258,559 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      primary metabolic process 10750
        protein metabolic process 6187
          glycoprotein metabolic process 360
            glycoprotein catabolic process 23
              O-sialoglycoprotein catabolic process 0
              elastin catabolic process + 4
              mannoprotein catabolic process 0
              protein deglycosylation involved in glycoprotein catabolic process + 4
              proteoglycan catabolic process + 5
              ubiquitin-dependent glycoprotein ERAD pathway + 4
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      organic substance metabolic process 11495
        macromolecule metabolic process 9944
          protein metabolic process 6187
            protein catabolic process 977
              glycoprotein catabolic process 23
                O-sialoglycoprotein catabolic process 0
                elastin catabolic process + 4
                mannoprotein catabolic process 0
                protein deglycosylation involved in glycoprotein catabolic process + 4
                proteoglycan catabolic process + 5
                ubiquitin-dependent glycoprotein ERAD pathway + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.