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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA export from nucleus
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Accession:GO:0006406 term browser browse the term
Definition:The directed movement of mRNA from the nucleus to the cytoplasm.
Synonyms:exact_synonym: mRNA export from cell nucleus;   mRNA export out of nucleus;   mRNA transport from nucleus to cytoplasm;   mRNA-nucleus export


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mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 5 41,339,292 41,365,641 RGD:13508589
G ALYREF Aly/REF export factor JBrowse link 9 398,207 402,787 RGD:9068941
G CHTOP chromatin target of PRMT1 JBrowse link 7 43,418,902 43,428,012 RGD:13508589
G DDX25 DEAD-box helicase 25 JBrowse link 5 8,566,748 8,585,965 RGD:9068941
G DDX39A DExD-box helicase 39A JBrowse link 20 48,196,350 48,204,667 RGD:13508589
G DDX39B DExD-box helicase 39B JBrowse link 12 1,032,377 1,044,465 RGD:13508589
G EIF5A eukaryotic translation initiation factor 5A JBrowse link 5 32,268,103 32,272,970 RGD:9068941
G ENY2 ENY2, transcription and export complex 2 subunit JBrowse link 13 9,895,537 9,905,081 RGD:13508589
G FYTTD1 forty-two-three domain containing 1 JBrowse link 33 28,920,361 28,947,111 RGD:13508589
G GLE1 GLE1 RNA export mediator JBrowse link 9 55,024,673 55,059,297 RGD:13508589
G HHEX hematopoietically expressed homeobox JBrowse link 28 7,057,379 7,063,326 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G LOC102153616 NACHT, LRR and PYD domains-containing protein 1b allele 5-like JBrowse link 34 26,139,612 26,173,702 RGD:13508589
G LOC492024 nuclear RNA export factor 2-like JBrowse link X 75,689,761 75,717,537 RGD:13508589
G LOC492026 nuclear RNA export factor 2 JBrowse link X 76,015,042 76,027,781 RGD:9068941
G MCM3AP minichromosome maintenance complex component 3 associated protein JBrowse link 31 39,507,714 39,559,855 RGD:13508589
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NUP107 nucleoporin 107 JBrowse link 10 10,838,881 10,887,347 RGD:13508589
G NUP133 nucleoporin 133 JBrowse link 4 9,751,902 9,805,796 RGD:13508589
G NUP155 nucleoporin 155 JBrowse link 4 71,340,109 71,409,286 RGD:13508589
G NUP160 nucleoporin 160 JBrowse link 18 41,859,697 41,902,677 RGD:13508589
G NUP214 nucleoporin 214 JBrowse link 9 52,840,300 52,943,785 RGD:13508589
G NUP85 nucleoporin 85 JBrowse link 9 5,251,387 5,298,096 RGD:13508589
G NUP88 nucleoporin 88 JBrowse link 5 31,366,213 31,389,780 RGD:13508589
G NXF1 nuclear RNA export factor 1 JBrowse link 18 53,884,512 53,895,168 RGD:13508589
G NXF3 nuclear RNA export factor 3 RGD:13508589
G RAE1 ribonucleic acid export 1 JBrowse link 24 42,364,559 42,385,209 RGD:13508589
G RBM15B RNA binding motif protein 15B JBrowse link 20 38,191,079 38,194,150 RGD:9068941
G SARNP SAP domain containing ribonucleoprotein JBrowse link 10 153,682 203,598 RGD:9068941
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 12 5,677,879 5,686,220 RGD:13508589
G THOC1 THO complex 1 JBrowse link 7 67,082,100 67,136,592 RGD:13508589
G THOC2 THO complex 2 JBrowse link X 95,087,209 95,217,450 RGD:13508589
G THOC3 THO complex 3 JBrowse link 4 37,130,944 37,151,479 RGD:13508589
G THOC5 THO complex 5 JBrowse link 26 22,748,857 22,785,288 RGD:13508589
G THOC6 THO complex 6 JBrowse link 6 38,161,506 38,164,287 RGD:9068941
G THOC7 THO complex 7 JBrowse link 20 27,367,628 27,390,868 RGD:13508589
G TPR translocated promoter region, nuclear basket protein JBrowse link 7 19,376,951 19,442,368 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:9068941
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POLR2D RNA polymerase II subunit D JBrowse link 19 22,754,118 22,774,054 RGD:13508589
G TPR translocated promoter region, nuclear basket protein JBrowse link 7 19,376,951 19,442,368 RGD:13508589
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C15H12orf50 chromosome 15 C12orf50 homolog JBrowse link 15 29,141,006 29,182,958 RGD:13508589
G DDX19A DEAD-box helicase 19A JBrowse link 5 76,343,328 76,365,443 RGD:13508589
G DDX19B DEAD-box helicase 19B JBrowse link 5 76,314,675 76,336,318 RGD:13508589
G DDX25 DEAD-box helicase 25 JBrowse link 5 8,566,748 8,585,965 RGD:13508589
G ENY2 ENY2, transcription and export complex 2 subunit JBrowse link 13 9,895,537 9,905,081 RGD:9068941
G ENY2 ENY2 transcription and export complex 2 subunit RGD:13508589
G GLE1 GLE1 RNA export mediator JBrowse link 9 55,024,673 55,059,297 RGD:13508589
G HHEX hematopoietically expressed homeobox JBrowse link 28 7,057,379 7,063,326 RGD:13508589
G LOC100688271 transcription and mRNA export factor ENY2 pseudogene JBrowse link 26 5,027,290 5,027,643 RGD:13508589
G LOC492024 nuclear RNA export factor 2-like JBrowse link X 75,689,761 75,717,537 RGD:13508589
G LOC492026 nuclear RNA export factor 2 JBrowse link X 76,015,042 76,027,781 RGD:13508589
G LOC609814 nuclear RNA export factor 2 JBrowse link X 76,039,635 76,052,337 RGD:13508589
G MCM3AP minichromosome maintenance complex component 3 associated protein JBrowse link 31 39,507,714 39,559,855 RGD:13508589
G NUP93 nucleoporin 93 JBrowse link 2 59,465,482 59,573,871 RGD:13508589
G NXF1 nuclear RNA export factor 1 JBrowse link 18 53,884,512 53,895,168 RGD:13508589
G NXF3 nuclear RNA export factor 3 RGD:9068941
G PABPN1 poly(A) binding protein nuclear 1 JBrowse link 8 3,580,768 3,585,546 RGD:9068941
G PCID2 PCI domain containing 2 JBrowse link 22 60,602,440 60,623,811 RGD:13508589
G POLDIP3 DNA polymerase delta interacting protein 3 JBrowse link 10 22,853,321 22,878,098 RGD:13508589
G THOC2 THO complex 2 JBrowse link X 95,087,209 95,217,450 RGD:13508589
G ZC3H11A zinc finger CCCH-type containing 11A JBrowse link 38 477,900 505,754 RGD:13508589
regulation of mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 20 46,773,585 46,800,544 RGD:9068941
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 19 23,081,625 23,122,618 RGD:13508589
G NSUN2 NOP2/Sun RNA methyltransferase 2 JBrowse link 34 7,145,176 7,172,761 RGD:13508589
G SETD2 SET domain containing 2, histone lysine methyltransferase JBrowse link 20 41,675,539 41,800,697 RGD:13508589
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 9 42,859,154 42,896,044 RGD:13508589
G THOC2 THO complex 2 JBrowse link X 95,087,209 95,217,450 RGD:13508589
G THOC5 THO complex 5 JBrowse link 26 22,748,857 22,785,288 RGD:9068941
G TPR translocated promoter region, nuclear basket protein JBrowse link 7 19,376,951 19,442,368 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16042
    metabolic process 10497
      organic substance metabolic process 9994
        macromolecule metabolic process 8684
          gene expression 5293
            mRNA export from nucleus 55
              mRNA export from nucleus in response to heat stress + 2
              poly(A)+ mRNA export from nucleus 21
              regulation of mRNA export from nucleus + 8
Path 2
Term Annotations click to browse term
  biological_process 16042
    localization 5896
      establishment of localization 4432
        transport 4292
          nitrogen compound transport 1990
            amide transport 1673
              peptide transport 1642
                protein transport 1583
                  intracellular protein transport 953
                    protein export from nucleus 132
                      ribonucleoprotein complex export from nucleus 74
                        mRNA-containing ribonucleoprotein complex export from nucleus 55
                          mRNA export from nucleus 55
                            mRNA export from nucleus in response to heat stress + 2
                            poly(A)+ mRNA export from nucleus 21
                            regulation of mRNA export from nucleus + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.