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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA export from nucleus
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Accession:GO:0006406 term browser browse the term
Definition:The directed movement of mRNA from the nucleus to the cytoplasm.
Synonyms:exact_synonym: mRNA export from cell nucleus;   mRNA export out of nucleus;   mRNA transport from nucleus to cytoplasm;   mRNA-nucleus export


show annotations for term's descendants           Sort by:
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:32,725,632...32,753,021
Ensembl chr17:38,003,362...38,030,715 		JBrowse link
G ALYREF Aly/REF export factor involved_in ISO (PMID:17190602), (PMID:25662211) UniProt PMID:17190602 PMID:25662211 NCBI chr17:76,293,410...76,297,171 JBrowse link
G CHTOP chromatin target of PRMT1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:128,989,920...129,002,242
Ensembl chr 1:132,617,934...132,630,654 		JBrowse link
G DDX25 DEAD-box helicase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,718,758...120,738,527
Ensembl chr11:124,632,841...124,667,585 		JBrowse link
G DDX39A DExD-box helicase 39A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:13,972,137...13,982,680
Ensembl chr19:14,816,362...14,826,873 		JBrowse link
G DDX39B DExD-box helicase 39B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:31,191,333...31,203,246
Ensembl chr 6:32,081,210...32,092,569 		JBrowse link
G EIF4E eukaryotic translation initiation factor 4E involved_in ISO (MGI:7484269|PMID:8577715)
(MGI:3700413|PMID:11500381)		 UniProt PMID:8577715 PMID:11500381 MGI:3700413 MGI:7484269 NCBI chr 4:91,268,463...91,329,800
Ensembl chr 4:101,941,142...101,994,809 		JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478 		JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321 		JBrowse link
G FYTTD1 forty-two-three domain containing 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:195,166,837...195,201,886
Ensembl chr 3:205,049,785...205,084,249 		JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985 		JBrowse link
G LOC100976160 SAP domain-containing ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,093,916...33,159,303
Ensembl chr12:33,808,532...33,814,616
Ensembl chr12:33,808,532...33,814,616 		JBrowse link
G LOC100978865 nuclear RNA export factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G MCM3AP minichromosome maintenance complex component 3 associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:32,577,539...32,629,060
Ensembl chr21:45,828,554...45,878,100 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294 		JBrowse link
G NCBP3 nuclear cap binding subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:3,852,643...3,896,031
Ensembl chr17:3,856,338...3,888,382 		JBrowse link
G NUP107 nucleoporin 107 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:66,198,838...66,254,505
Ensembl chr12:68,981,409...69,035,642 		JBrowse link
G NUP133 nucleoporin 133 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:204,985,690...205,053,072
Ensembl chr 1:210,017,649...210,084,746 		JBrowse link
G NUP155 nucleoporin 155 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19070573) Ensembl
MGI		 PMID:19070573 GO_REF:0000107 NCBI chr 5:73,000,597...73,080,417
Ensembl chr 5:78,285,001...78,360,601 		JBrowse link
G NUP160 nucleoporin 160 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,732,678...47,805,906
Ensembl chr11:48,281,972...48,352,998 		JBrowse link
G NUP214 nucleoporin 214 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8896451) Ensembl
MGI		 PMID:8896451 GO_REF:0000107 NCBI chr 9:102,246,575...102,355,291
Ensembl chr 9:130,893,110...131,001,305 		JBrowse link
G NUP85 nucleoporin 85 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:69,152,452...69,182,688
Ensembl chr17:74,708,654...74,735,628 		JBrowse link
G NUP88 nucleoporin 88 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:5,434,448...5,468,004
Ensembl chr17:5,426,379...5,460,375 		JBrowse link
G NXF1 nuclear RNA export factor 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943 		JBrowse link
G NXF3 nuclear RNA export factor 3 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:92,300,328...92,317,613
Ensembl chr  X:102,679,383...102,696,618 		JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,292,400...23,296,427
Ensembl chr20:23,647,127...23,647,549 		JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) UniProt PMID:19586903 MGI:6158828 NCBI chr 3:51,321,963...51,325,092 JBrowse link
G SEM1 SEM1, 26S proteasome complex subunit involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 7:88,647,366...88,668,476 JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,157,321...36,165,896
Ensembl chr 6:37,352,484...37,362,195 		JBrowse link
G THOC1 THO complex subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:14,052,858...14,102,559
Ensembl chr18:17,692,797...17,742,570 		JBrowse link
G THOC2 THO complex subunit 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897 		JBrowse link
G THOC3 THO complex subunit 3 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:171,310,321...171,319,192
Ensembl chr 5:178,205,744...178,214,684 		JBrowse link
G THOC5 THO complex subunit 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:10,553,665...10,599,948
Ensembl chr22:28,357,644...28,404,346 		JBrowse link
G THOC6 THO complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:1,965,875...1,969,595
Ensembl chr16:3,138,229...3,141,876 		JBrowse link
G THOC7 THO complex subunit 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:63,736,797...63,766,566
Ensembl chr 3:65,117,215...65,146,879 		JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:61,562,372...61,622,841
Ensembl chr2A:62,698,935...62,757,793 		JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:55,701,639...55,738,377
Ensembl chr 4:62,095,948...62,132,609 		JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223 		JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C10H12orf50 chromosome 10 C12orf50 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:85,521,276...85,571,715
Ensembl chr12:88,827,774...88,877,008 		JBrowse link
G DDX19A DEAD-box helicase 19A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:54,643,745...54,670,285
Ensembl chr16:70,179,241...70,211,638 		JBrowse link
G DDX25 DEAD-box helicase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:120,718,758...120,738,527
Ensembl chr11:124,632,841...124,667,585 		JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478 		JBrowse link
G GLE1 GLE1 RNA export mediator involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:99,627,336...99,664,537
Ensembl chr 9:128,294,607...128,331,301 		JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992 		JBrowse link
G HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:38,255,183...38,300,877
Ensembl chr19:46,762,459...46,808,374 		JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:32,750,718...32,810,360
Ensembl chr2B:128,146,087...128,192,258 		JBrowse link
G LOC100976160 SAP domain-containing ribonucleoprotein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:33,093,916...33,159,303
Ensembl chr12:33,808,532...33,814,616
Ensembl chr12:33,808,532...33,814,616 		JBrowse link
G LOC100978865 nuclear RNA export factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15820316) TreeGrafter
MGI		 PMID:15820316 GO_REF:0000118 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G LOC100984626 ATP-dependent RNA helicase DDX19B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:54,683,291...54,718,133
Ensembl chr16:70,126,833...70,167,548 		JBrowse link
G MCM3AP minichromosome maintenance complex component 3 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:32,577,539...32,629,060
Ensembl chr21:45,828,554...45,878,100 		JBrowse link
G NUP133 nucleoporin 133 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:204,985,690...205,053,072
Ensembl chr 1:210,017,649...210,084,746 		JBrowse link
G NUP93 nucleoporin 93 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:37,007,481...37,122,785
Ensembl chr16:56,140,546...56,255,561 		JBrowse link
G NXF1 nuclear RNA export factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15820316) Ensembl
MGI
TreeGrafter		 PMID:15820316 GO_REF:0000107 GO_REF:0000118 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943 		JBrowse link
G NXF3 nuclear RNA export factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15820316) TreeGrafter
MGI		 PMID:15820316 GO_REF:0000118 NCBI chr  X:92,300,328...92,317,613
Ensembl chr  X:102,679,383...102,696,618 		JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:23,292,400...23,296,427
Ensembl chr20:23,647,127...23,647,549 		JBrowse link
G NXT2 nuclear transport factor 2 like export factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:98,642,894...98,651,778
Ensembl chr  X:109,113,261...109,122,181 		JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 involved_in ISO (PMID:19364924) UniProt PMID:19364924 NCBI chr14:4,126,179...4,144,810
Ensembl chr14:22,220,986...22,239,403 		JBrowse link
G PCID2 PCI domain containing 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:94,319,699...94,350,763
Ensembl chr13:113,388,251...113,419,251 		JBrowse link
G POLDIP3 DNA polymerase delta interacting protein 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:23,478,786...23,510,074
Ensembl chr22:41,631,447...41,662,899 		JBrowse link
G THOC2 THO complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897 		JBrowse link
G ZC3H11A zinc finger CCCH-type containing 11A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:179,399,533...179,458,811
Ensembl chr 1:183,710,919...183,746,214 		JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8L A-kinase anchoring protein 8 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,912,960...14,950,479
Ensembl chr19:15,897,969...15,936,486 		JBrowse link
G ALKBH5 alkB homolog 5, RNA demethylase acts_upstream_of_or_within ISO (PMID:23177736) UniProt PMID:23177736 NCBI chr17:32,725,632...32,753,021
Ensembl chr17:38,003,362...38,030,715 		JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:32,750,718...32,810,360
Ensembl chr2B:128,146,087...128,192,258 		JBrowse link
G NSUN2 NOP2/Sun RNA methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,921,073...6,953,622
Ensembl chr 5:6,596,414...6,629,121 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,073,288...28,113,041
Ensembl chr17:28,578,199...28,617,292 		JBrowse link
G THOC2 THO complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24315442) Ensembl
MGI		 PMID:24315442 GO_REF:0000107 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897 		JBrowse link
G THOC5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) MGI PMID:24315442 NCBI chr22:10,553,665...10,599,948
Ensembl chr22:28,357,644...28,404,346 		JBrowse link
G TPR translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223 		JBrowse link
G WNK1 WNK lysine deficient protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:825,659...985,016
Ensembl chr12:791,153...944,602 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    cellular process 15499
      cellular metabolic process 8633
        cellular biosynthetic process 7007
          macromolecule biosynthetic process 6490
            gene expression 6062
              mRNA export from nucleus 57
                mRNA export from nucleus in response to heat stress + 1
                poly(A)+ mRNA export from nucleus 23
                regulation of mRNA export from nucleus + 10
Path 2
Term Annotations click to browse term
  biological_process 16440
    localization 5279
      establishment of localization 4578
        transport 4266
          organic substance transport 2250
            nucleobase-containing compound transport 191
              nucleic acid transport 120
                RNA transport 120
                  RNA export from nucleus 76
                    mRNA export from nucleus 57
                      mRNA export from nucleus in response to heat stress + 1
                      poly(A)+ mRNA export from nucleus 23
                      regulation of mRNA export from nucleus + 10
paths to the root