Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
go back to main search page
Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
 
RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO RGD PMID:14614102 RGD:1299544 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G Prpf6 pre-mRNA processing factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20797886) MGI
Ensembl
PMID:20797886 GO_REF:0000107 NCBI chrNW_004936514:11,175,410...11,220,928 JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:5051946|PMID:21729784) MGI PMID:21729784 MGI:5051946 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flot1 flotillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:387,012...401,076 JBrowse link
G Rftn1 raftlin, lipid raft linker 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21266579) MGI
Ensembl
PMID:21266579 GO_REF:0000107 NCBI chrNW_004936473:9,119,234...9,317,696 JBrowse link
G Rftn2 raftlin family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4947923|PMID:21266579) MGI
Ensembl
PMID:21266579 GO_REF:0000107 MGI:4947923 NCBI chrNW_004936506:1,561,910...1,620,476 JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Atr ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:4,074,543...4,178,859 JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2683131|PMID:12843282) MGI
Ensembl
PMID:12843282 GO_REF:0000107 MGI:2683131 NCBI chrNW_004936490:15,251,132...15,278,264 JBrowse link
G Fubp3 far upstream element binding protein 3 ISO RGD PMID:23121659 RGD:12792285 NCBI chrNW_004936487:17,586,878...17,638,028 JBrowse link
G Kif5c kinesin family member 5C ISO RGD PMID:23121659 RGD:12792285 NCBI chrNW_004936469:28,282,921...28,431,638 JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) MGI PMID:12843282 MGI:2683131 NCBI chrNW_004936514:5,058,682...5,103,493 JBrowse link
G Znf385a zinc finger protein 385A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610775|PMID:16286649) MGI
Ensembl
PMID:16286649 GO_REF:0000107 MGI:3610775 NCBI chrNW_004936512:11,562,635...11,585,026 JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:21,324,669...21,409,430 JBrowse link
G Ybx1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,729,707...1,756,108 JBrowse link
G Alyref Aly/REF export factor involved_in ISO (PMID:17190602), (PMID:25662211) UniProt PMID:17190602 PMID:25662211 NCBI chrNW_004936594:5,398,973...5,402,846 JBrowse link
G Chtop chromatin target of PRMT1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,436,260...3,444,522 JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:6,301,347...6,322,640 JBrowse link
G Ddx39a DExD-box helicase 39A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,973,340...2,981,973 JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,968,032...1,980,789 JBrowse link
G Eny2 ENY2 transcription and export complex 2 subunit involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936470:35,634,650...35,649,683 JBrowse link
G Fyttd1 forty-two-three domain containing 1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936784:344,564...370,088 JBrowse link
G Hhex hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035 JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936833:920,683...928,047 JBrowse link
G Ncbp3 nuclear cap binding subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:460,237...493,634 JBrowse link
G Nup107 nucleoporin 107 involved_in IEA UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936545:6,600,124...6,642,839 JBrowse link
G Nup133 nucleoporin 133 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:20,185,558...20,230,904 JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3839697|PMID:19070573) MGI
Ensembl
PMID:19070573 GO_REF:0000107 MGI:3839697 NCBI chrNW_004936518:4,635,970...4,688,669 JBrowse link
G Nup160 nucleoporin 160 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,435,938...1,491,439 JBrowse link
G Nup214 nucleoporin 214 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:83941|PMID:8896451) MGI
Ensembl
PMID:8896451 GO_REF:0000107 MGI:83941 NCBI chrNW_004936487:17,981,402...18,067,828 JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936581:488,691...501,323 JBrowse link
G Nxf3 nuclear RNA export factor 3 involved_in ISO (PMID:11545741) UniProt PMID:11545741 NCBI chrNW_004936547:8,066,413...8,084,756 JBrowse link
G Nxf5 nuclear RNA export factor 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936813:733,393...874,254 JBrowse link
G Nxt1 nuclear transport factor 2 like export factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:2,243,181...2,246,244 JBrowse link
G Rae1 ribonucleic acid export 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936530:200,369...219,807 JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:2,780,110...2,782,775 JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:226,333...280,562 JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936585:3,727,199...3,747,873 JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:28984244) UniProt PMID:28984244 NCBI chrNW_004936476:22,790,411...22,799,498 JBrowse link
G Thoc1 THO complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:590,119...638,152 JBrowse link
G Thoc2 THO complex 2 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936479:6,855,405...6,972,256 JBrowse link
G Thoc3 THO complex 3 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004936597:433,865...436,852 JBrowse link
G Thoc5 THO complex subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:3,465,707...3,503,966 JBrowse link
G Thoc6 THO complex subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,144,122...1,147,345 JBrowse link
G Thoc7 THO complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936637:2,569,261...2,575,653 JBrowse link
G Ythdc1 YTH domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:130,593...161,275 JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor acts_upstream_of_or_within ISO (MGI:4943819|PMID:20541607) MGI PMID:20541607 MGI:4943819 NCBI chrNW_004936735:2,130,943...2,177,815 JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (MGI:5823498|PMID:28063167) MGI PMID:28063167 MGI:5823498 NCBI chrNW_004936562:2,269,341...2,369,098 JBrowse link
G Znf385a zinc finger protein 385A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610775|PMID:16286649) MGI
Ensembl
PMID:16286649 GO_REF:0000107 MGI:3610775 NCBI chrNW_004936512:11,562,635...11,585,026 JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeleton associated protein involved_in ISO PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chrNW_004936470:9,185,145...9,188,260 JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:15,251,132...15,278,264 JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:12629046 RGD:9685156 NCBI chrNW_004936483:17,216,288...17,296,430 JBrowse link
G Eny2 ENY2 transcription and export complex 2 subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:35,634,650...35,649,683 JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:3798322|PMID:18539120) UniProt PMID:18539120 MGI:3798322 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:16,031,832...16,063,779 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:11886857 RGD:625404 NCBI chrNW_004936509:6,576,933...6,585,734 JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:12,430,343...12,468,794 JBrowse link
G Igf2bp2 insulin like growth factor 2 mRNA binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936578:4,070,997...4,222,661 JBrowse link
G Igf2bp3 insulin like growth factor 2 mRNA binding protein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936478:456,369...595,705 JBrowse link
G Kif5c kinesin family member 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:28,282,921...28,431,638 JBrowse link
G LOC101966195 huntingtin ISO RGD PMID:22355657 RGD:6902916 NCBI chrNW_004936477:20,443,101...20,577,167 JBrowse link
G Mapt microtubule associated protein tau ISO RGD PMID:25847153 RGD:11061097 NCBI chrNW_004936541:2,381,411...2,479,984 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936524:6,429,735...6,465,035 JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936522:7,303,366...7,353,700 JBrowse link
G Nup107 nucleoporin 107 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936545:6,600,124...6,642,839 JBrowse link
G Nup35 nucleoporin 35 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936509:11,681,038...11,798,620 JBrowse link
G Nup58 nucleoporin 58 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936688:986,037...1,025,351 JBrowse link
G Nup85 nucleoporin 85 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936594:503,698...531,851 JBrowse link
G Nup88 nucleoporin 88 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936677:2,385,289...2,417,398 JBrowse link
G Nup93 nucleoporin 93 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936475:8,930,320...9,027,840 JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936498:1,112,724...1,219,790 JBrowse link
G Nutf2 nuclear transport factor 2 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936475:18,214,593...18,232,406 JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936581:488,691...501,323 JBrowse link
G Nxf5 nuclear RNA export factor 5 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936813:733,393...874,254 JBrowse link
G Nxt1 nuclear transport factor 2 like export factor 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936620:2,243,181...2,246,244 JBrowse link
G Nxt2 nuclear transport factor 2 like export factor 2 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936499:5,604,376...5,610,972 JBrowse link
G Peg10 paternally expressed 10 involved_in ISO (MGI:6828898|PMID:34413232) UniProt PMID:34413232 MGI:6828898 NCBI chrNW_004936585:5,437,807...5,451,185 JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936867:666,208...667,851 JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936602:3,013,490...3,030,489 JBrowse link
G Slbp stem-loop binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:21,672,143...21,680,899 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chrNW_004936648:1,809,395...1,835,890 JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nup153 nucleoporin 153 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:3,529,506...3,588,830 JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eny2 ENY2 transcription and export complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:35,634,650...35,649,683 JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:16,031,832...16,063,779 JBrowse link
G Hhex hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G LOC101973872 bcl-2-like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,039,970...1,044,942 JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936778:273,152...318,157 JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575625|PMID:15820316) MGI
Ensembl
PMID:15820316 GO_REF:0000107 MGI:3575625 NCBI chrNW_004936581:488,691...501,323 JBrowse link
G Nxf3 nuclear RNA export factor 3 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chrNW_004936547:8,066,413...8,084,756 JBrowse link
G Nxf5 nuclear RNA export factor 5 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chrNW_004936813:733,393...874,254 JBrowse link
G Pcid2 PCI domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936472:440,440...464,116 JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936718:516,609...538,275 JBrowse link
G Thoc2 THO complex 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:6,855,405...6,972,256 JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A involved_in ISO (PMID:22928037) UniProt PMID:22928037 NCBI chrNW_004936567:863,295...901,837 JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISO PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,045,043...7,077,710 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,088,815...15,131,048 JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:17,473,787...17,519,278 JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,416,257...7,436,024 JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936580:5,537,338...5,554,384 JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:7,224,989...7,241,348 JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936643:2,354,799...2,368,048 JBrowse link
G Cct6a chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936543:7,887,511...7,900,174 JBrowse link
G Cct7 chaperonin containing TCP1 subunit 7 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936491:17,017,687...17,033,526 JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936500:12,949,563...12,962,699 JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936927:134,770...144,057 JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936555:2,392,202...2,428,857 JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936647:520,542...525,226 JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936673:2,829,599...2,830,407 JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936798:559,706...572,710 JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936664:2,995,212...3,010,563 JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936603:3,831,838...3,900,429 JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936489:11,273,335...11,282,811 JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,434,629...16,481,044 JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chrNW_004936647:478,445...520,361 JBrowse link
G LOC101966195 huntingtin ISO RGD PMID:20185826 RGD:10403027 NCBI chrNW_004936477:20,443,101...20,577,167 JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:5,088,260...5,123,735 JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,766,699...43,805,919 JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:798,894...825,413 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:795,940...898,823 JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,878,645...4,910,613 JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004936479:6,855,405...6,972,256 JBrowse link
G Thoc5 THO complex subunit 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004936657:3,465,707...3,503,966 JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2446384|PMID:12496368) MGI
Ensembl
PMID:12496368 GO_REF:0000107 MGI:2446384 NCBI chrNW_004936474:15,088,815...15,131,048 JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:4,884,458...4,918,041 JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004936927:134,770...144,057 JBrowse link
G Exosc10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:130,735...153,608 JBrowse link
G Parn poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,666,908...2,810,159 JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor involved_in ISO (PMID:28418038) UniProt PMID:28418038 NCBI chrNW_004936594:5,398,973...5,402,846 JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154056|PMID:11579093) MGI
Ensembl
PMID:11579093 GO_REF:0000107 MGI:2154056 NCBI chrNW_004936581:488,691...501,323 JBrowse link
G Nxf5 nuclear RNA export factor 5 acts_upstream_of_or_within ISO (MGI:3587445|PMID:16027110) MGI PMID:16027110 MGI:3587445 NCBI chrNW_004936813:733,393...874,254 JBrowse link
G Nxt1 nuclear transport factor 2 like export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154056|PMID:11579093) MGI
Ensembl
PMID:11579093 GO_REF:0000107 MGI:2154056 NCBI chrNW_004936620:2,243,181...2,246,244 JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kpnb1 karyopherin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,603,520...13,635,567 JBrowse link
G Snupn snurportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,373,492...34,393,666 JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
IEA
RGD
Ensembl
PMID:14523087 GO_REF:0000107 RGD:9685480 NCBI chrNW_004936478:2,970,261...2,980,277 JBrowse link
G Nxf5 nuclear RNA export factor 5 involved_in ISO (PMID:11566096) UniProt PMID:11566096 NCBI chrNW_004936813:733,393...874,254 JBrowse link
G Sidt2 SID1 transmembrane family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,426,937...2,443,721 JBrowse link
G Ybx1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (MGI:3822232|PMID:18809582) MGI PMID:18809582 MGI:3822232 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Tsc1 TSC complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:19,331,183...19,386,841 JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrpl18 mitochondrial ribosomal protein L18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:11,283,601...11,289,125 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Tst thiosulfate sulfurtransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,880,545...3,886,881 JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tst thiosulfate sulfurtransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,880,545...3,886,881 JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,416,257...7,436,024 JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:7,224,989...7,241,348 JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936927:134,770...144,057 JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004936489:11,273,335...11,282,811 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784 JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,444,985...2,455,423 JBrowse link
G Nop58 NOP58 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:1,457,038...1,487,374 JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,321,278...3,326,720 JBrowse link
G Prpf31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004936994:239,688...252,269 JBrowse link
G Znhit6 zinc finger HIT-type containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:33,425...94,291 JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035 JBrowse link
G Ncbp3 nuclear cap binding subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:460,237...493,634 JBrowse link
G Phax phosphorylated adaptor for RNA export acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1891494|PMID:10786834) MGI
Ensembl
InterPro
PMID:10786834 GO_REF:0000002 GO_REF:0000107 MGI:1891494 NCBI chrNW_004936504:1,585...14,592 JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ran RAN, member RAS oncogene family involved_in ISO (PMID:8636225) UniProt PMID:8636225 NCBI chrNW_004936660:1,669,352...1,673,972 JBrowse link
G Snupn snurportin 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936471:34,373,492...34,393,666 JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784 JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:286,397...295,779 JBrowse link
G Xpot exportin for tRNA involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936545:2,721,437...2,762,785 JBrowse link
tRNA re-export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpot exportin for tRNA involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936545:2,721,437...2,762,785 JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ybx1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:24,026,459...24,047,724 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15040
    localization 4778
      macromolecule localization 2612
        RNA localization 132
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 98
          intracellular mRNA localization + 12
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 5
          telomerase RNA localization + 19
paths to the root