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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
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Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization



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RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IMP RGD PMID:14614102 RGD:1299544 NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129
JBrowse link
G Prpf6 pre-mRNA processing factor 6 acts_upstream_of_or_within ISO (PMID:20797886) RGD PMID:20797886 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:5051946|PMID:21729784) RGD PMID:21729784 MGI:5051946 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flot1 flotillin 1 involved_in ISO (PMID:25204797) RGD PMID:25204797 NCBI chr20:2,917,864...2,927,993
Ensembl chr20:2,917,137...2,927,978
JBrowse link
G Rftn1 raftlin lipid raft linker 1 acts_upstream_of_or_within ISO (PMID:21266579) RGD PMID:21266579 NCBI chr 9:10,804,611...11,002,084
Ensembl chr 9:10,804,611...11,002,084
JBrowse link
G Rftn2 raftlin family member 2 acts_upstream_of_or_within ISO (MGI:4947923|PMID:21266579) RGD PMID:21266579 MGI:4947923 NCBI chr 9:56,651,617...56,707,830
Ensembl chr 9:56,630,460...56,707,810
JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) RGD PMID:12843282 MGI:2683131 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
JBrowse link
G Fubp3 far upstream element binding protein 3 IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540
JBrowse link
G Kif5c kinesin family member 5C IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:34,032,082...34,185,597
Ensembl chr 3:34,032,105...34,182,413
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2683131|PMID:12843282)
PMID:21873635
RGD PMID:12843282 PMID:21873635 MGI:2683131, RGD:13792537 NCBI chr 3:155,680,000...155,725,969
Ensembl chr 3:155,680,000...155,725,909
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:2,840,801...3,084,451
Ensembl chr 5:2,840,765...3,084,929
JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (MGI:3610775|PMID:16286649) RGD PMID:16286649 MGI:3610775 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548
JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:24356509)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24356509 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:6099018|PMID:25801897) RGD PMID:25801897 MGI:6099018 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27559612)
UniProt
RGD
PMID:27559612 GO_REF:0000024 NCBI chr 5:132,882,137...132,899,108
Ensembl chr 5:132,882,145...132,898,862
JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO
ISS
IBA
(PMID:23177736)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:23177736 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331
JBrowse link
G Alyref Aly/REF export factor involved_in ISO
IBA
(PMID:17190602), (PMID:25662211)
PMID:21873635
RGD PMID:17190602 PMID:25662211 PMID:21873635 RGD:13792537 NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
JBrowse link
G Chtop chromatin target of PRMT1 involved_in ISO
IBA
(PMID:23299939)
PMID:21873635
RGD PMID:23299939 PMID:21873635 RGD:13792537 NCBI chr 2:175,981,266...175,992,854
Ensembl chr 2:175,981,271...175,992,748
JBrowse link
G Chtopl1 chromatin target of PRMT1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,804,334...162,805,482
Ensembl chr 4:162,804,336...162,805,581
JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:44,820,693...44,837,935
Ensembl chr  X:44,820,820...44,837,934
JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3696333|PMID:16968703)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16968703 GO_REF:0000024 GO_REF:0000107 MGI:3696333 NCBI chr 8:33,894,224...33,910,377
Ensembl chr 8:33,894,232...33,921,764
JBrowse link
G Ddx39a DExD-box helicase 39A involved_in IBA
ISO
PMID:21873635
UniProtKB:Q07478 (PMID:15047853)
RGD PMID:15047853 PMID:21873635 RGD:13792537 NCBI chr19:24,418,743...24,427,422
Ensembl chr19:24,418,114...24,426,954
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IBA
ISO
PMID:21873635
UniProtKB:Q07478 (PMID:15047853), (PMID:17190602)
RGD PMID:15047853 PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
JBrowse link
G ENSRNOG00000069815 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:30,933,948...30,935,941 JBrowse link
G Fyttd1 forty-two-three domain containing 1 involved_in ISO
IEA
ISS
IBA
(PMID:19836239)
GO_REF:0000002
GO_REF:0000024
PMID:21873635
GO_REF:0000107
RGD
InterPro
UniProt
Ensembl
PMID:19836239 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr11:67,877,967...67,907,565
Ensembl chr11:67,877,967...67,907,511
JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,209,312...13,237,018
Ensembl chr 3:13,209,322...13,237,379
JBrowse link
G Gle1-ps1 GLE1 RNA export mediator, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,124,892...107,127,024
Ensembl chr 6:107,124,892...107,127,024
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) RGD PMID:12554669 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA
IEA
ISO
PMID:9578590
GO_REF:0000107
GO_REF:0000002
(PMID:10567417)
Ensembl
InterPro
RGD
PMID:10567417 PMID:9578590 PMID:10567417 GO_REF:0000002 GO_REF:0000107, RGD:9685477, RGD:9685424 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G LOC108350566 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:118,679,416...118,680,923
Ensembl chr 3:118,679,472...118,680,908
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000002
(PMID:17190602), (PMID:21326824), (PMID:26382858)
PMID:21873635
UniProt
InterPro
RGD
PMID:17190602 PMID:21326824 PMID:26382858 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:21326824) RGD PMID:21326824 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Ncbp3 nuclear cap binding subunit 3 involved_in ISO (PMID:26382858) RGD PMID:26382858 NCBI chr10:57,665,716...57,695,432
Ensembl chr10:57,665,716...57,695,432
JBrowse link
G Nup107 nucleoporin 107 involved_in IBA
ISS
IEA
ISO
PMID:21873635
PMID:11684705
GO_REF:0000104
(PMID:11684705)
UniProt
RGD
PMID:11684705 PMID:21873635 PMID:11684705 GO_REF:0000104, RGD:13792537, RGD:8553287 NCBI chr 7:53,353,740...53,398,345
Ensembl chr 7:53,353,743...53,398,370
JBrowse link
G Nup133 nucleoporin 133 involved_in ISO (PMID:11684705) RGD PMID:11684705 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239
JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within ISO MGI:3840086 (MGI:3839697|PMID:19070573) RGD PMID:19070573 MGI:3839697 NCBI chr 2:57,201,310...57,252,918
Ensembl chr 2:57,201,272...57,254,148
JBrowse link
G Nup160 nucleoporin 160 involved_in ISO (PMID:11684705)
(MGI:3690169|PMID:11684705)
RGD PMID:11684705 MGI:3690169 NCBI chr 3:76,665,786...76,729,296
Ensembl chr 3:76,665,786...76,724,565
JBrowse link
G Nup214 nucleoporin 214 involved_in
acts_upstream_of_or_within
ISO (PMID:10557333)
MGI:2441651 (MGI:83941|PMID:8896451)
RGD PMID:8896451 PMID:10557333 MGI:83941 NCBI chr 3:15,255,111...15,340,568
Ensembl chr 3:15,255,119...15,340,568
JBrowse link
G Nup85 nucleoporin 85 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:100,806,482...100,825,029
Ensembl chr10:100,806,437...100,825,043
JBrowse link
G Nup88 nucleoporin 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,667,903...55,692,249
Ensembl chr10:55,667,906...55,692,257
JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000002
(PMID:19165146), (PMID:25628361), (PMID:28984244)
UniProt
InterPro
RGD
PMID:19165146 PMID:25628361 PMID:28984244 GO_REF:0000002 GO_REF:0000024 NCBI chr 1:205,655,442...205,668,637
Ensembl chr 1:205,655,375...205,668,636
JBrowse link
G Nxf3 nuclear RNA export factor 3 involved_in ISO (PMID:11545741) RGD PMID:11545741 NCBI chr  X:99,025,901...99,050,409
Ensembl chr  X:99,025,901...99,039,261
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in ISO (PMID:11566096) RGD PMID:11566096 NCBI chr  X:98,535,374...98,552,562
Ensembl chr  X:98,535,375...98,552,526
JBrowse link
G Nxt1 nuclear transport factor 2-like export factor 1 involved_in ISO (PMID:25628361) RGD PMID:25628361 NCBI chr 3:136,108,975...136,111,897
Ensembl chr 3:136,108,862...136,111,907
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:114,274,845...114,303,278
Ensembl chr 7:114,275,085...114,303,271
JBrowse link
G Rae1 ribonucleic acid export 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:161,779,096...161,794,048
Ensembl chr 3:161,779,088...161,794,038
JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) RGD PMID:19586903 MGI:6158828 NCBI chr 8:107,543,542...107,548,195
Ensembl chr 8:107,525,898...107,551,696
JBrowse link
G RGD1565693 similar to GLE1-like, RNA export mediator isoform 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,202,205...107,204,543
Ensembl chr 6:107,202,400...107,204,535
JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in ISS
ISO
GO_REF:0000024
(PMID:20844015)
UniProt
RGD
PMID:20844015 GO_REF:0000024 NCBI chr 7:1,251,096...1,305,335
Ensembl chr 7:1,251,098...1,305,332
JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:34,671,848...34,692,005
Ensembl chr 4:34,671,848...34,692,005
JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:28984244) RGD PMID:28984244 NCBI chr20:7,091,928...7,101,860
Ensembl chr20:7,091,910...7,101,078
JBrowse link
G Thoc1 THO complex 1 involved_in ISO (PMID:17190602), (PMID:22144908) RGD PMID:17190602 PMID:22144908 NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
JBrowse link
G Thoc2 THO complex 2 involved_in IBA
ISO
PMID:21873635
(PMID:17190602)
RGD PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513
JBrowse link
G Thoc2l THO complex subunit 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:5,197,093...5,234,960
Ensembl chr14:5,197,003...5,235,453
JBrowse link
G Thoc3 THO complex 3 involved_in ISO
IBA
(PMID:17190602)
PMID:21873635
RGD PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr17:10,143,184...10,152,375
Ensembl chr17:10,143,139...10,152,370
JBrowse link
G Thoc5 THO complex 5 involved_in ISO
IBA
(PMID:17190602)
PMID:21873635
RGD PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718
JBrowse link
G Thoc6 THO complex 6 involved_in ISO
IBA
(PMID:17190602)
PMID:21873635
RGD PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr10:12,700,051...12,705,411
Ensembl chr10:12,700,051...12,706,925
JBrowse link
G Thoc7 THO complex 7 involved_in IBA
ISO
PMID:21873635
(PMID:17190602)
RGD PMID:17190602 PMID:21873635 RGD:13792537 NCBI chr15:11,262,362...11,277,200
Ensembl chr15:11,262,613...11,277,193
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28984244)
UniProt
RGD
PMID:28984244 GO_REF:0000024 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr2d RNA polymerase II subunit D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:17897941)
GO_REF:0000024
RGD
UniProt
PMID:17897941 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104663 (MGI:4943819|PMID:20541607)
Ensembl
RGD
PMID:20541607 GO_REF:0000107 MGI:4943819 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354
JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:3051635|MGI:5570192 (MGI:5823498|PMID:28063167) RGD PMID:28063167 MGI:5823498 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264
JBrowse link
G Zfp385a zinc finger protein 385A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3510440 (MGI:3610775|PMID:16286649)
RGD PMID:16286649 PMID:21873635 MGI:3610775, RGD:13792537 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548
JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006740.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr 1:230,295,276...230,295,656 JBrowse link
G AABR07018058.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr15:31,592,001...31,592,384 JBrowse link
G Arc activity-regulated cytoskeleton-associated protein involved_in IDA PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378
JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 IMP RGD PMID:12629046 RGD:9685156 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3798322|PMID:18539120)
UniProt
RGD
PMID:18539120 GO_REF:0000024 MGI:3798322 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IMP RGD PMID:11886857 RGD:625404 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306
JBrowse link
G Htt huntingtin IMP RGD PMID:22355657 RGD:6902916 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129
JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:78,874,402...78,974,392
Ensembl chr11:78,874,414...78,974,377
JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:78,060,494...78,195,007
Ensembl chr 4:78,060,494...78,194,865
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,862,555...1,872,301
Ensembl chr 9:1,862,899...1,872,451
JBrowse link
G Kif5c kinesin family member 5C involved_in ISS
ISO
GO_REF:0000024
(MGI:4413400|PMID:19608740)
UniProt
RGD
PMID:19608740 GO_REF:0000024 MGI:4413400 NCBI chr 3:34,032,082...34,185,597
Ensembl chr 3:34,032,105...34,182,413
JBrowse link
G LOC100363294 stem-loop binding protein-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:9,859,867...9,942,294
Ensembl chr 6:9,859,867...9,942,293
JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
JBrowse link
G Mapt microtubule-associated protein tau IMP RGD PMID:25847153 RGD:11061097 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291
JBrowse link
G Nup153 nucleoporin 153 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876
JBrowse link
G Nup210 nucleoporin 210 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:123,511,559...123,609,874
Ensembl chr 4:123,511,559...123,609,874
JBrowse link
G Nup35 nucleoporin 35 involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 3:65,555,203...65,594,488
Ensembl chr 3:65,558,968...65,585,130
JBrowse link
G Nup50 nucleoporin 50 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:116,047,960...116,065,231
Ensembl chr 7:116,048,021...116,066,905
JBrowse link
G Nup50-ps1 nucleoporin 50, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:128,787,567...128,789,296
Ensembl chr 4:128,787,100...128,789,312
JBrowse link
G Nup54 nucleoporin 54 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:15,617,630...15,636,029
Ensembl chr14:15,617,679...15,636,028
JBrowse link
G Nup58 nucleoporin 58 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:34,358,170...34,407,160
Ensembl chr15:34,358,277...34,407,060
JBrowse link
G Nup62 nucleoporin 62 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,298,995...95,314,902
Ensembl chr 1:95,295,526...95,315,174
JBrowse link
G Nup85 nucleoporin 85 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:100,806,482...100,825,029
Ensembl chr10:100,806,437...100,825,043
JBrowse link
G Nup88 nucleoporin 88 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,667,903...55,692,249
Ensembl chr10:55,667,906...55,692,257
JBrowse link
G Nup93 nucleoporin 93 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415
JBrowse link
G Nutf2 nuclear transport factor 2 involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr19:33,752,319...33,773,595
Ensembl chr19:33,752,291...33,773,591
JBrowse link
G Nxt2 nuclear transport factor 2-like export factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:105,855,616...105,862,902
Ensembl chr  X:105,855,608...105,862,899
JBrowse link
G Peg10 paternally expressed 10 involved_in ISO (MGI:6828898|PMID:34413232) RGD PMID:34413232 MGI:6828898 NCBI chr 4:32,842,394...32,855,641
Ensembl chr 4:32,848,493...32,852,621
JBrowse link
G Pom121 POM121 transmembrane nucleoporin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:21,273,713...21,294,299
Ensembl chr12:21,276,913...21,294,294
JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:50,387,698...50,501,568
Ensembl chr 1:50,387,698...50,498,831
JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:146,877,739...146,891,130
Ensembl chr 4:146,875,524...146,891,173
JBrowse link
G Sec13-ps2 SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:967,396...968,674
Ensembl chr18:967,394...968,680
JBrowse link
G Senp2 SUMO specific peptidase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238
JBrowse link
G Slbp stem-loop binding protein involved_in ISO
IBA
(PMID:19155325)
PMID:21873635
RGD PMID:19155325 PMID:21873635 RGD:13792537 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477
JBrowse link
G Xpo1 exportin 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:97,233,263...97,275,536
Ensembl chr14:97,233,270...97,275,498
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748
JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340
JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nup153 nucleoporin 153 involved_in ISO
IEA
ISS
(PMID:22253824)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22253824 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:21613532), (PMID:22253824)
GO_REF:0000024
RGD
UniProt
PMID:21613532 PMID:22253824 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx19a DEAD-box helicase 19A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:38,942,497...38,962,853
Ensembl chr19:38,942,496...38,962,854
JBrowse link
G Ddx19b DEAD-box helicase 19B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:38,968,215...38,998,907
Ensembl chr19:38,968,215...38,997,259
JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:33,894,224...33,910,377
Ensembl chr 8:33,894,232...33,921,764
JBrowse link
G Eny2 ENY2, transcription and export complex 2 subunit involved_in ISO
IBA
(PMID:23591820)
PMID:21873635
RGD PMID:23591820 PMID:21873635 RGD:13792537 NCBI chr 7:75,581,215...75,605,903
Ensembl chr 7:75,581,240...75,605,897
JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,209,312...13,237,018
Ensembl chr 3:13,209,322...13,237,379
JBrowse link
G Gle1-ps1 GLE1 RNA export mediator, pseudogene 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:107,124,892...107,127,024
Ensembl chr 6:107,124,892...107,127,024
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) RGD PMID:12554669 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172
JBrowse link
G LOC500827 similar to hypothetical protein FLJ35821 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:35,406,147...35,443,324
Ensembl chr 7:35,411,555...35,443,320
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23591820) RGD PMID:23591820 NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165
JBrowse link
G Nup133 nucleoporin 133 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239
JBrowse link
G Nup93 nucleoporin 93 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026
JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
PR:Q9QZV9|UniProtKB:Q6P250 (MGI:3575625|PMID:15820316)
RGD PMID:15820316 PMID:21873635 MGI:3575625, RGD:13792537 NCBI chr 1:205,655,442...205,668,637
Ensembl chr 1:205,655,375...205,668,636
JBrowse link
G Nxf2 nuclear RNA export factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:98,135,953...98,157,117
Ensembl chr  X:98,135,950...98,157,089
JBrowse link
G Nxf3 nuclear RNA export factor 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:Q77YF8 (MGI:3575625|PMID:15820316)
RGD PMID:15820316 PMID:21873635 MGI:3575625, RGD:13792537 NCBI chr  X:99,025,901...99,050,409
Ensembl chr  X:99,025,901...99,039,261
JBrowse link
G Nxf5 nuclear RNA export factor 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:98,676,259...98,698,739
Ensembl chr  X:98,689,466...98,695,167
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
PR:Q9QZV9|UniProtKB:Q6P250 (MGI:3575625|PMID:15820316)
RGD PMID:15820316 PMID:21873635 MGI:3575625, RGD:13792537 NCBI chr  X:98,535,374...98,552,562
Ensembl chr  X:98,535,375...98,552,526
JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 involved_in ISO (PMID:19364924) RGD PMID:19364924 NCBI chr15:28,368,100...28,372,712
Ensembl chr15:28,368,100...28,372,703
JBrowse link
G Pcid2 PCI domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in ISO
IBA
(PMID:22928037)
PMID:21873635
(MGI:5520029|PMID:22928037)
RGD PMID:22928037 PMID:21873635 MGI:5520029, RGD:13792537 NCBI chr 7:114,274,845...114,303,278
Ensembl chr 7:114,275,085...114,303,271
JBrowse link
G RGD1565693 similar to GLE1-like, RNA export mediator isoform 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:107,202,205...107,204,543
Ensembl chr 6:107,202,400...107,204,535
JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:1,251,096...1,305,335
Ensembl chr 7:1,251,098...1,305,332
JBrowse link
G Thoc2 THO complex 2 involved_in ISO (PMID:22928037) RGD PMID:22928037 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513
JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A involved_in ISO
IBA
(PMID:22928037)
PMID:21873635
RGD PMID:22928037 PMID:21873635 RGD:13792537 NCBI chr13:45,073,422...45,113,901
Ensembl chr13:45,071,718...45,114,009
JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748
JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:19864460) RGD PMID:19864460 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21613532)
UniProt
RGD
PMID:21613532 GO_REF:0000024 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) RGD PMID:30842217 NCBI chr 6:119,405,103...119,446,861
Ensembl chr 6:119,404,334...119,448,915
JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 7:52,692,725...52,705,478
Ensembl chr 7:52,692,725...52,706,944
JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 2:173,765,792...173,790,353
Ensembl chr 2:173,765,698...173,790,757
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr14:96,991,853...97,004,732
Ensembl chr14:96,991,859...97,005,267
JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 2:82,591,750...82,602,903
Ensembl chr 2:82,590,630...82,602,930
JBrowse link
G Cct6a chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr12:26,872,736...26,883,125
Ensembl chr12:26,872,574...26,883,337
JBrowse link
G Cct7 chaperonin containing TCP1 subunit 7 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:117,989,232...118,006,478
Ensembl chr 4:117,989,232...118,006,580
JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr11:26,710,370...26,722,079
Ensembl chr11:26,710,370...26,722,079
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) RGD PMID:25467444
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr16:22,837,586...22,868,293
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 1:47,829,061...47,836,809
Ensembl chr 1:47,828,652...47,836,839
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:14681208), (PMID:15613540) RGD PMID:14681208 PMID:15613540 NCBI chr 9:14,740,182...14,778,171
Ensembl chr 9:14,740,182...14,778,171
JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B IMP RGD PMID:21471000 RGD:9999187 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344
JBrowse link
G Htt huntingtin IMP RGD PMID:20185826 RGD:10403027 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17234882)
UniProt
Ensembl
RGD
PMID:17234882 GO_REF:0000024 GO_REF:0000107 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:28418038) RGD PMID:28418038 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:19141475) RGD PMID:19141475 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5508611|PMID:17234882) RGD PMID:17234882 MGI:5508611 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513
JBrowse link
G Thoc5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718
JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) RGD PMID:22253824 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:2446384|PMID:12496368)
UniProt
RGD
PMID:12496368 GO_REF:0000024 MGI:2446384 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180
JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:26950371) RGD PMID:26950371
G Exosc10 exosome component 10 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560
JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor involved_in ISO (PMID:28418038) RGD PMID:28418038 NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
JBrowse link
G Nup153 nucleoporin 153 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876
JBrowse link
G Nup155 nucleoporin 155 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,201,310...57,252,918
Ensembl chr 2:57,201,272...57,254,148
JBrowse link
G Nup188 nucleoporin 188 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,559,917...13,616,313
Ensembl chr 3:13,559,990...13,616,307
JBrowse link
G Nup214 nucleoporin 214 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:15,255,111...15,340,568
Ensembl chr 3:15,255,119...15,340,568
JBrowse link
G Nup62 nucleoporin 62 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:95,298,995...95,314,902
Ensembl chr 1:95,295,526...95,315,174
JBrowse link
G Nup62cl nucleoporin 62 C-terminal like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:103,668,458...103,724,957
Ensembl chr  X:103,668,455...103,724,081
JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) RGD PMID:11579093 MGI:2154056 NCBI chr 1:205,655,442...205,668,637
Ensembl chr 1:205,655,375...205,668,636
JBrowse link
G Nxf7 nuclear RNA export factor 7 acts_upstream_of_or_within ISO (MGI:3587445|PMID:16027110) RGD PMID:16027110 MGI:3587445 NCBI chr  X:98,535,374...98,552,562
Ensembl chr  X:98,535,375...98,552,526
JBrowse link
G Nxt1 nuclear transport factor 2-like export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) RGD PMID:11579093 MGI:2154056 NCBI chr 3:136,108,975...136,111,897
Ensembl chr 3:136,108,862...136,111,907
JBrowse link
G Pom121 POM121 transmembrane nucleoporin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:21,273,713...21,294,299
Ensembl chr12:21,276,913...21,294,294
JBrowse link
G Pom121l2 POM121 transmembrane nucleoporin-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,546,144...42,553,447
Ensembl chr17:42,546,326...42,553,423
JBrowse link
G Rae1 ribonucleic acid export 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:161,779,096...161,794,048
Ensembl chr 3:161,779,088...161,794,038
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISS
ISO
GO_REF:0000024
(PMID:11952838)
UniProt
RGD
PMID:11952838 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
G Xpo5 exportin 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,740,182...14,778,171
Ensembl chr 9:14,740,182...14,778,171
JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) RGD PMID:20691904 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kpnb1 karyopherin subunit beta 1 involved_in ISO
IEA
(PMID:9670026)
GO_REF:0000107
RGD
Ensembl
PMID:9670026 GO_REF:0000107 NCBI chr10:82,145,662...82,174,437
Ensembl chr10:82,145,420...82,174,605
JBrowse link
G Snupn snurportin 1 involved_in ISO (PMID:9670026) RGD PMID:9670026 NCBI chr 8:57,347,412...57,388,345
Ensembl chr 8:57,348,130...57,380,912
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:9864356)
GO_REF:0000024
RGD
UniProt
PMID:9864356 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:4831049|PMID:20833368)
Ensembl
RGD
PMID:20833368 PMID:21873635 GO_REF:0000107 MGI:4831049, RGD:13792537 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IMP
ISO
(PMID:17004321) RGD PMID:17004321 PMID:14523087 RGD:9685480 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in ISO (PMID:11566096) RGD PMID:11566096 NCBI chr  X:98,535,374...98,552,562
Ensembl chr  X:98,535,375...98,552,526
JBrowse link
G Sidt1 SID1 transmembrane family, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:56,362,788...56,459,939
Ensembl chr11:56,363,512...56,459,050
JBrowse link
G Sidt2 SID1 transmembrane family, member 2 involved_in ISO
ISS
IBA
(PMID:28277980)
(MGI:5908512|PMID:27046251), (MGI:5909194|PMID:28277980)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:27046251 PMID:28277980 PMID:21873635 GO_REF:0000024 MGI:5908512 MGI:5909194, RGD:13792537 NCBI chr 8:46,232,379...46,248,913
Ensembl chr 8:46,232,383...46,248,700
JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISO
ISS
(PMID:29073095)
GO_REF:0000024
RGD
UniProt
PMID:29073095 GO_REF:0000024 NCBI chr 5:132,882,137...132,899,108
Ensembl chr 5:132,882,145...132,898,862
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:27,601,232...27,601,825 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:26,091,905...26,186,434 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:111,554,752...111,557,411 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,352,572...4,353,409 JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582 PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO (PMID:17308101) RGD PMID:17308101 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrpl18 mitochondrial ribosomal protein L18 involved_in ISO (PMID:21685364) RGD PMID:21685364 NCBI chr 1:47,837,169...47,841,987
Ensembl chr 1:47,836,561...47,841,987
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) RGD PMID:20691904 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Tst thiosulfate sulfurtransferase involved_in ISS
ISO
GO_REF:0000024
(PMID:20663881)
UniProt
RGD
PMID:20663881 GO_REF:0000024 NCBI chr 7:109,948,061...109,955,378
Ensembl chr 7:109,948,062...109,957,216
JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tst thiosulfate sulfurtransferase involved_in ISO
ISS
(PMID:21685364)
GO_REF:0000024
RGD
UniProt
PMID:21685364 GO_REF:0000024 NCBI chr 7:109,948,061...109,955,378
Ensembl chr 7:109,948,062...109,957,216
JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 7:52,692,725...52,705,478
Ensembl chr 7:52,692,725...52,706,944
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr14:96,991,853...97,004,732
Ensembl chr14:96,991,859...97,005,267
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) RGD PMID:25467444
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 1:47,829,061...47,836,809
Ensembl chr 1:47,828,652...47,836,839
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
ISS
(PMID:19285445), (PMID:25467444)
GO_REF:0000024
RGD
UniProt
PMID:19285445 PMID:25467444 GO_REF:0000024 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932
JBrowse link
G Nop58 NOP58 ribonucleoprotein involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Prpf31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA
ISO
PMID:21873635
(PMID:17636026)
RGD PMID:17636026 PMID:21873635 RGD:13792537 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960
JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:26382858) RGD PMID:26382858 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Ncbp3 nuclear cap binding subunit 3 involved_in ISO (PMID:26382858) RGD PMID:26382858 NCBI chr10:57,665,716...57,695,432
Ensembl chr10:57,665,716...57,695,432
JBrowse link
G Phax phosphorylated adaptor for RNA export involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
(MGI:1891494|PMID:10786834)
InterPro
RGD
PMID:10786834 PMID:21873635 GO_REF:0000002 MGI:1891494, RGD:13792537 NCBI chr18:50,053,133...50,069,823
Ensembl chr18:50,053,023...50,069,823
JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ran RAN, member RAS oncogene family involved_in ISO
ISS
(PMID:8636225)
GO_REF:0000024
RGD
UniProt
PMID:8636225 GO_REF:0000024 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276
JBrowse link
G Snupn snurportin 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:57,347,412...57,388,345
Ensembl chr 8:57,348,130...57,380,912
JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nol6 nucleolar protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336
JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:17308035) RGD PMID:17308035 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203
JBrowse link
G Xpot exportin for tRNA involved_in ISO (PMID:9660920) RGD PMID:9660920 NCBI chr 7:57,111,536...57,151,847
Ensembl chr 7:57,111,536...57,152,099
JBrowse link
tRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tomm20 translocase of outer mitochondrial membrane 20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:54,925,197...54,935,188
Ensembl chr19:54,923,402...54,935,198
JBrowse link
G Tomm20l translocase of outer mitochondrial membrane 20 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:89,594,016...89,612,070
Ensembl chr 6:89,599,873...89,610,147
JBrowse link
tRNA re-export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpot exportin for tRNA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:57,111,536...57,151,847
Ensembl chr 7:57,111,536...57,152,099
JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:29073095)
UniProt
RGD
PMID:29073095 GO_REF:0000024 NCBI chr 5:132,882,137...132,899,108
Ensembl chr 5:132,882,145...132,898,862
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20091
    localization 5661
      macromolecule localization 3111
        RNA localization 177
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 141
          intracellular mRNA localization + 13
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 6
          telomerase RNA localization + 19
paths to the root