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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
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Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization


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RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IMP RGD PMID:14614102 RGD:1299544 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Prpf6 pre-mRNA processing factor 6 acts_upstream_of_or_within ISO (PMID:20797886) RGD PMID:20797886 NCBI chr 3:177,098,137...177,162,937
Ensembl chr 3:177,098,073...177,162,916
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:5051946|PMID:21729784) RGD PMID:21729784 MGI:5051946 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flot1 flotillin 1 involved_in ISO (PMID:25204797) RGD PMID:25204797 NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
JBrowse link
G Rftn1 raftlin lipid raft linker 1 acts_upstream_of_or_within ISO (PMID:21266579) RGD PMID:21266579 NCBI chr 9:12,740,885...12,942,358
Ensembl chr 9:12,740,885...12,942,358
JBrowse link
G Rftn2 raftlin family member 2 acts_upstream_of_or_within ISO (MGI:4947923|PMID:21266579) RGD PMID:21266579 MGI:4947923 NCBI chr 9:61,754,859...61,810,992
Ensembl chr 9:61,756,428...61,810,417
JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:103,673,578...103,770,886
Ensembl chr 8:103,673,411...103,770,947
JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2683131|PMID:12843282)
Ensembl
RGD
PMID:12843282 GO_REF:0000107 MGI:2683131 NCBI chr10:86,724,534...86,744,485
Ensembl chr10:86,724,427...86,745,927
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) RGD PMID:12843282 MGI:2683131 NCBI chr 3:163,703,204...163,748,996
Ensembl chr 3:163,703,204...163,748,996
JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (MGI:3610775|PMID:16286649) RGD PMID:16286649 MGI:3610775 NCBI chr 7:144,939,616...144,966,364
Ensembl chr 7:144,939,619...144,966,370
JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISS
ISO
GO_REF:0000024
(PMID:24356509)
UniProt
RGD
PMID:24356509 GO_REF:0000024 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:6099018|PMID:25801897) RGD PMID:25801897 MGI:6099018 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27559612)
UniProt
RGD
PMID:27559612 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07065139.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:111,570,784...111,572,949 JBrowse link
G AABR07065139.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:111,534,548...111,542,338 JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO
ISS
IBA
(PMID:23177736)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:23177736, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:46,906,314...46,927,759
Ensembl chr10:46,906,115...46,930,579
JBrowse link
G Alyref Aly/REF export factor involved_in ISO
IBA
(PMID:17190602), (PMID:25662211)
PMID:21873635
RGD PMID:17190602 PMID:25662211, PMID:21873635 RGD:13792537 NCBI chr10:109,768,593...109,774,639
Ensembl chr10:109,770,876...109,774,639
JBrowse link
G Chtop chromatin target of PRMT1 involved_in ISO
IBA
(PMID:23299939)
PMID:21873635
RGD PMID:23299939, PMID:21873635 RGD:13792537 NCBI chr 2:189,887,850...189,900,079
Ensembl chr 2:189,887,857...189,899,325
JBrowse link
G Chtopl1 chromatin target of PRMT1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,118,314...163,119,533
Ensembl chr 4:163,118,452...163,119,391
JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:48,196,789...48,213,506
Ensembl chr  X:48,196,916...48,213,505
JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3696333|PMID:16968703)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16968703 GO_REF:0000024 GO_REF:0000107 MGI:3696333 NCBI chr 8:36,744,686...36,760,720
Ensembl chr 8:36,744,667...36,760,742
JBrowse link
G Ddx39a DExD-box helicase 39A involved_in IBA
ISO
PMID:21873635
UniProtKB:Q07478 (PMID:15047853)
RGD PMID:15047853, PMID:21873635 RGD:13792537 NCBI chr19:24,846,530...24,854,886
Ensembl chr19:24,846,938...24,854,953
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IBA
ISO
PMID:21873635
UniProtKB:Q07478 (PMID:15047853), (PMID:17190602)
RGD PMID:15047853 PMID:17190602, PMID:21873635 RGD:13792537 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G Fyttd1 forty-two-three domain containing 1 involved_in IEA
ISS
IBA
ISO
GO_REF:0000002
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(PMID:19836239)
InterPro
UniProt
Ensembl
RGD
PMID:19836239, PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr11:71,113,931...71,136,694
Ensembl chr11:71,116,579...71,136,673
JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,498,098...8,530,218
Ensembl chr 3:8,498,122...8,526,771
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) RGD PMID:12554669 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA
IEA
ISO
PMID:9578590
GO_REF:0000002
(PMID:10567417)
InterPro
RGD
PMID:10567417, PMID:9578590, PMID:10567417 GO_REF:0000002, RGD:9685477, RGD:9685424 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G LOC679894 similar to THO complex subunit 2 (Tho2) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:6,561,962...6,601,906
Ensembl chr14:6,581,983...6,587,141
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,879,304...12,917,069
Ensembl chr20:12,879,278...12,917,039
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IBA
ISS
(PMID:17190602), (PMID:26382858)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:17190602 PMID:26382858, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Nup107 nucleoporin 107 involved_in IBA
ISS
IEA
ISO
PMID:21873635
PMID:11684705
GO_REF:0000104
(PMID:11684705)
UniProt
RGD
PMID:11684705, PMID:21873635, PMID:11684705 GO_REF:0000104, RGD:13792537, RGD:8553287 NCBI chr 7:60,781,724...60,825,225
Ensembl chr 7:60,781,729...60,825,242
JBrowse link
G Nup133 nucleoporin 133 involved_in ISO (PMID:11684705) RGD PMID:11684705 NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
JBrowse link
G Nup155 nucleoporin 155 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3840086 (MGI:3839697|PMID:19070573)
Ensembl
RGD
PMID:19070573 GO_REF:0000107 MGI:3839697 NCBI chr 2:57,206,665...57,258,242
Ensembl chr 2:57,206,613...57,258,295
JBrowse link
G Nup160 nucleoporin 160 involved_in ISO (PMID:11684705)
(MGI:3690169|PMID:11684705)
RGD PMID:11684705 MGI:3690169 NCBI chr 3:79,496,239...79,562,163
Ensembl chr 3:79,498,179...79,551,128
JBrowse link
G Nup214 nucleoporin 214 involved_in
acts_upstream_of_or_within
ISO (PMID:10557333)
MGI:2441651 (MGI:83941|PMID:8896451)
RGD PMID:8896451 PMID:10557333 MGI:83941 NCBI chr 3:9,227,869...9,236,878
NCBI chr 3:10,993,584...11,070,638
Ensembl chr 3:9,227,823...9,236,736
Ensembl chr 3:9,227,823...9,236,736
JBrowse link
G Nup85 nucleoporin 85 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,118,999...104,137,258
Ensembl chr10:104,118,945...104,137,319
JBrowse link
G Nup88 nucleoporin 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:57,581,828...57,606,171
Ensembl chr10:57,581,828...57,606,171
JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in ISO
ISS
(PMID:19165146), (PMID:28984244)
GO_REF:0000024
RGD
UniProt
PMID:19165146 PMID:28984244 GO_REF:0000024 NCBI chr 1:224,957,535...224,970,728
Ensembl chr 1:224,957,517...224,970,727
JBrowse link
G Nxf3 nuclear RNA export factor 3 involved_in ISO (PMID:11545741) RGD PMID:11545741 NCBI chr  X:106,562,957...106,587,487
Ensembl chr  X:106,563,984...106,576,314
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in ISO (PMID:11566096) RGD PMID:11566096 NCBI chr  X:106,049,075...106,066,334
Ensembl chr  X:106,049,075...106,066,227
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:123,992,167...124,020,596
Ensembl chr 7:123,992,167...124,020,574
JBrowse link
G Rae1 ribonucleic acid export 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:171,012,984...171,030,392
Ensembl chr 3:171,015,617...171,030,384
JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) RGD PMID:19586903 MGI:6158828 NCBI chr 8:115,618,242...115,623,068
Ensembl chr 8:115,618,555...115,621,394
JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in ISS
ISO
GO_REF:0000024
(PMID:20844015)
UniProt
RGD
PMID:20844015 GO_REF:0000024 NCBI chr 7:3,246,220...3,300,467
Ensembl chr 7:3,246,220...3,300,455
JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:32,067,444...32,087,600
Ensembl chr 4:32,067,444...32,087,600
JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:28984244) RGD PMID:28984244 NCBI chr20:6,288,285...6,298,218
Ensembl chr20:6,288,267...6,298,213
JBrowse link
G Thoc1 THO complex 1 involved_in ISO (PMID:17190602), (PMID:22144908) RGD PMID:17190602 PMID:22144908 NCBI chr18:1,142,540...1,177,084
Ensembl chr18:1,142,782...1,176,974
JBrowse link
G Thoc2 THO complex 2 involved_in IBA
ISO
PMID:21873635
(PMID:17190602)
RGD PMID:17190602, PMID:21873635 RGD:13792537 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Thoc3 THO complex 3 involved_in ISO
IBA
(PMID:17190602)
PMID:21873635
RGD PMID:17190602, PMID:21873635 RGD:13792537 NCBI chr17:10,676,943...10,686,134
Ensembl chr17:10,676,943...10,686,134
JBrowse link
G Thoc5 THO complex 5 involved_in ISO
IBA
(PMID:17190602)
PMID:21873635
RGD PMID:17190602, PMID:21873635 RGD:13792537 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
G Thoc6 THO complex 6 involved_in ISO (PMID:17190602) RGD PMID:17190602 NCBI chr10:12,989,135...12,994,495
Ensembl chr10:12,989,135...12,994,495
JBrowse link
G Thoc7 THO complex 7 involved_in IBA
ISO
PMID:21873635
(PMID:17190602)
RGD PMID:17190602, PMID:21873635 RGD:13792537 NCBI chr15:12,569,235...12,584,101
Ensembl chr15:12,569,235...12,584,094
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28984244)
UniProt
RGD
PMID:28984244 GO_REF:0000024 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr2d RNA polymerase II subunit D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:17897941)
GO_REF:0000024
RGD
UniProt
PMID:17897941 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
mRNA localization resulting in posttranscriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104663 (MGI:4943819|PMID:20541607)
Ensembl
RGD
PMID:20541607 GO_REF:0000107 MGI:4943819 NCBI chr 1:250,426,027...250,514,245
Ensembl chr 1:250,426,158...250,514,866
JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:3051635|MGI:5570192 (MGI:5823498|PMID:28063167) RGD PMID:28063167 MGI:5823498 NCBI chr 3:80,424,320...80,526,583
Ensembl chr 3:80,468,154...80,526,593
JBrowse link
G Zfp385a zinc finger protein 385A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3510440 (MGI:3610775|PMID:16286649)
RGD PMID:16286649, PMID:21873635 MGI:3610775, RGD:13792537 NCBI chr 7:144,939,616...144,966,364
Ensembl chr 7:144,939,619...144,966,370
JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07041481.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr  X:131,381,134...131,382,011 JBrowse link
G Arc activity-regulated cytoskeleton-associated protein involved_in IDA PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:86,724,534...86,744,485
Ensembl chr10:86,724,427...86,745,927
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 IMP RGD PMID:12629046 RGD:9685156 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Eif5a eukaryotic translation initiation factor 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:56,527,075...56,531,615
Ensembl chr10:56,527,085...56,531,483
JBrowse link
G Eif5a2 eukaryotic translation initiation factor 5A2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:115,336,646...115,354,203
Ensembl chr 2:115,337,439...115,354,203
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3798322|PMID:18539120)
UniProt
RGD
PMID:18539120 GO_REF:0000024 MGI:3798322 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IMP RGD PMID:11886857 RGD:625404 NCBI chr 3:62,481,222...62,491,356
Ensembl chr 3:62,481,323...62,487,227
JBrowse link
G Htt huntingtin IMP RGD PMID:22355657 RGD:6902916 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:82,466,071...82,621,105
Ensembl chr11:82,466,071...82,621,079
JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:78,744,683...78,879,457
Ensembl chr 4:78,746,547...78,879,294
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Kif5c kinesin family member 5C involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4413400|PMID:19608740)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19608740 GO_REF:0000024 GO_REF:0000107 MGI:4413400 NCBI chr 3:35,014,157...35,257,417
Ensembl chr 3:35,014,538...35,257,407
JBrowse link
G LOC100363294 stem-loop binding protein-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:27,550,426...27,557,699
Ensembl chr18:27,554,062...27,557,699
JBrowse link
G LOC500265 nucleoporin 50-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:128,264,112...128,267,776
Ensembl chr 4:128,264,118...128,266,082
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:7,984,043...8,066,874
Ensembl chr 6:7,984,019...8,066,868
JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:127,480,465...127,487,617
Ensembl chr 5:127,480,485...127,487,603
JBrowse link
G Mapt microtubule-associated protein tau IMP RGD PMID:25847153 RGD:11061097 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:126,976,636...127,022,941
Ensembl chr 5:126,976,456...127,022,939
JBrowse link
G Nup153 nucleoporin 153 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:18,358,712...18,411,368
Ensembl chr17:18,358,712...18,411,368
JBrowse link
G Nup210 nucleoporin 210 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:122,643,952...122,741,322
Ensembl chr 4:122,644,135...122,741,110
JBrowse link
G Nup35 nucleoporin 35 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:67,866,784...67,896,828
Ensembl chr 3:67,870,111...67,896,153
JBrowse link
G Nup50 nucleoporin 50 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:125,833,557...125,850,830
Ensembl chr 7:125,833,557...125,850,827
JBrowse link
G Nup54 nucleoporin 54 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,123,434...17,141,832
Ensembl chr14:17,123,360...17,141,767
JBrowse link
G Nup58 nucleoporin 58 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:40,496,754...40,545,933
Ensembl chr15:40,513,342...40,545,824
JBrowse link
G Nup62 nucleoporin 62 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:100,811,140...100,827,119
Ensembl chr 1:100,811,755...100,827,111
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:167,213,866...167,308,851
Ensembl chr 1:167,213,866...167,308,851
JBrowse link
G Nutf2 nuclear transport factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:37,830,917...37,852,192
Ensembl chr19:37,830,917...37,852,189
JBrowse link
G Nxt2 nuclear transport factor 2-like export factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:113,509,841...113,517,112
Ensembl chr  X:113,510,621...113,517,102
JBrowse link
G Pom121 POM121 transmembrane nucleoporin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:24,316,575...24,341,943
Ensembl chr12:24,324,590...24,341,938
JBrowse link
G Qk quaking involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:50,983,647...51,050,692
Ensembl chr 1:50,828,134...51,052,340
JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,755,261...198,758,028
Ensembl chr 2:198,755,262...198,758,028
JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:145,686,186...145,699,577
Ensembl chr 4:145,686,193...145,699,577
JBrowse link
G Senp2 SUMO specific peptidase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:82,627,973...82,664,702
Ensembl chr11:82,630,436...82,664,630
JBrowse link
G Slbp stem-loop binding protein involved_in ISO
IBA
(PMID:19155325)
PMID:21873635
RGD PMID:19155325, PMID:21873635 RGD:13792537 NCBI chr14:82,356,916...82,366,368
Ensembl chr14:82,356,916...82,366,368
JBrowse link
G Xpo1 exportin 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:108,007,421...108,049,088
Ensembl chr14:108,007,724...108,049,660
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS
(PMID:17369404)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17369404 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 5:2,853,455...2,882,731
Ensembl chr 5:2,853,459...2,882,668
JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nup153 nucleoporin 153 involved_in ISO
IEA
ISS
(PMID:22253824)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22253824 GO_REF:0000024 GO_REF:0000107 NCBI chr17:18,358,712...18,411,368
Ensembl chr17:18,358,712...18,411,368
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:21613532), (PMID:22253824)
GO_REF:0000024
RGD
UniProt
PMID:21613532 PMID:22253824 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcid2 PCI domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:81,757,582...81,783,047
Ensembl chr16:81,756,971...81,783,047
JBrowse link
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO
IBA
(PMID:20699273)
PMID:21873635
RGD PMID:20699273, PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07065139.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:111,570,784...111,572,949 JBrowse link
G AABR07065139.2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:111,534,548...111,542,338 JBrowse link
G Ddx19a DEAD-box helicase 19A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,251,510...43,271,865
Ensembl chr19:43,217,161...43,275,287
JBrowse link
G Ddx19b DEAD-box helicase 19B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,217,199...43,246,196
Ensembl chr19:43,217,161...43,275,287
JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,744,686...36,760,720
Ensembl chr 8:36,744,667...36,760,742
JBrowse link
G Eny2 ENY2, transcription and export complex 2 subunit involved_in ISO
IBA
(PMID:23591820)
PMID:21873635
RGD PMID:23591820, PMID:21873635 RGD:13792537 NCBI chr 7:83,348,656...83,358,430
Ensembl chr 7:83,348,694...83,357,492
JBrowse link
G Gle1 GLE1 RNA export mediator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,498,098...8,530,218
Ensembl chr 3:8,498,122...8,526,771
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) RGD PMID:12554669 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,849,508...24,891,339
Ensembl chr18:24,849,545...24,880,317
JBrowse link
G LOC500827 similar to hypothetical protein FLJ35821 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:40,316,165...40,350,482
Ensembl chr 7:40,316,639...40,350,474
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23591820) RGD PMID:23591820 NCBI chr20:12,879,304...12,917,069
Ensembl chr20:12,879,278...12,917,039
JBrowse link
G Nup133 nucleoporin 133 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
JBrowse link
G Nup93 nucleoporin 93 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:11,159,769...11,263,980
Ensembl chr19:11,159,774...11,263,980
JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
PR:Q9QZV9|UniProtKB:Q6P250 (MGI:3575625|PMID:15820316)
GO_REF:0000107
RGD
Ensembl
PMID:15820316, PMID:21873635 GO_REF:0000107 MGI:3575625, RGD:13792537 NCBI chr 1:224,957,535...224,970,728
Ensembl chr 1:224,957,517...224,970,727
JBrowse link
G Nxf2 nuclear RNA export factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:105,772,718...105,793,324
Ensembl chr  X:105,772,722...105,793,306
JBrowse link
G Nxf3 nuclear RNA export factor 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:Q77YF8 (MGI:3575625|PMID:15820316)
RGD PMID:15820316, PMID:21873635 MGI:3575625, RGD:13792537 NCBI chr  X:106,562,957...106,587,487
Ensembl chr  X:106,563,984...106,576,314
JBrowse link
G Nxf5 nuclear RNA export factor 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:106,229,474...106,253,226
Ensembl chr  X:106,230,013...106,236,115
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
PR:Q9QZV9|UniProtKB:Q6P250 (MGI:3575625|PMID:15820316)
RGD PMID:15820316, PMID:21873635 MGI:3575625, RGD:13792537 NCBI chr  X:106,049,075...106,066,334
Ensembl chr  X:106,049,075...106,066,227
JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 involved_in ISO (PMID:19364924) RGD PMID:19364924 NCBI chr15:33,555,640...33,560,251
Ensembl chr15:33,555,640...33,560,242
JBrowse link
G Pcid2 PCI domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:81,757,582...81,783,047
Ensembl chr16:81,756,971...81,783,047
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in ISO
IBA
(PMID:22928037)
PMID:21873635
(MGI:5520029|PMID:22928037)
RGD PMID:22928037, PMID:21873635 MGI:5520029, RGD:13792537 NCBI chr 7:123,992,167...124,020,596
Ensembl chr 7:123,992,167...124,020,574
JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:3,246,220...3,300,467
Ensembl chr 7:3,246,220...3,300,455
JBrowse link
G Thoc2 THO complex 2 involved_in ISO (PMID:22928037) RGD PMID:22928037 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A involved_in ISO
IBA
(PMID:22928037)
PMID:21873635
RGD PMID:22928037, PMID:21873635 RGD:13792537 NCBI chr13:50,196,042...50,234,862
Ensembl chr13:50,196,042...50,234,862
JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS
(PMID:17369404)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17369404 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS
(PMID:17369404)
GO_REF:0000024
RGD
UniProt
PMID:17369404 GO_REF:0000024 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:19864460) RGD PMID:19864460 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21613532)
UniProt
RGD
PMID:21613532 GO_REF:0000024 NCBI chr 5:147,927,145...147,953,093
Ensembl chr 5:147,927,152...147,953,093
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) RGD PMID:30842217 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 7:60,106,532...60,122,779
Ensembl chr 7:60,109,974...60,122,805
JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 2:187,669,051...187,693,610
Ensembl chr 2:187,668,796...187,693,610
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr14:107,767,392...107,780,270
Ensembl chr14:107,767,392...107,780,270
JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 2:84,667,578...84,678,730
Ensembl chr 2:84,667,633...84,678,790
JBrowse link
G Cct6a chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr12:30,491,584...30,501,813
Ensembl chr12:30,491,416...30,501,860
JBrowse link
G Cct7 chaperonin containing TCP1 subunit 7 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:117,235,023...117,252,265
Ensembl chr 4:117,235,023...117,252,265
JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr11:27,130,172...27,141,881
Ensembl chr11:27,130,172...27,141,881
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr16:24,582,000...24,612,773
Ensembl chr16:24,578,678...24,612,732
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 3:103,747,654...103,748,739
Ensembl chr 3:103,747,654...103,748,739
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:133,037,515...133,127,183
NCBI chr 4:133,131,711...133,133,170
Ensembl chr 4:133,037,014...133,131,953
JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 1:48,025,664...48,033,343
Ensembl chr 1:48,025,663...48,033,396
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:14681208), (PMID:15613540) RGD PMID:14681208 PMID:15613540 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B IMP RGD PMID:21471000 RGD:9999187 NCBI chr10:34,955,713...34,961,662
Ensembl chr10:34,955,716...34,961,608
Ensembl chr10:34,955,716...34,961,608
JBrowse link
G Htt huntingtin IMP RGD PMID:20185826 RGD:10403027 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17234882)
UniProt
Ensembl
RGD
PMID:17234882 GO_REF:0000024 GO_REF:0000107 NCBI chr18:24,849,508...24,891,339
Ensembl chr18:24,849,545...24,880,317
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:28418038) RGD PMID:28418038 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:19141475) RGD PMID:19141475 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5508611|PMID:17234882) RGD PMID:17234882 MGI:5508611 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Thoc5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) RGD PMID:22253824 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:2446384|PMID:12496368)
UniProt
RGD
PMID:12496368 GO_REF:0000024 MGI:2446384 NCBI chr 5:147,927,145...147,953,093
Ensembl chr 5:147,927,152...147,953,093
JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor involved_in ISO (PMID:28418038) RGD PMID:28418038 NCBI chr10:109,768,593...109,774,639
Ensembl chr10:109,770,876...109,774,639
JBrowse link
G Nup153 nucleoporin 153 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:18,358,712...18,411,368
Ensembl chr17:18,358,712...18,411,368
JBrowse link
G Nup155 nucleoporin 155 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,206,665...57,258,242
Ensembl chr 2:57,206,613...57,258,295
JBrowse link
G Nup188 nucleoporin 188 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,852,271...8,908,608
Ensembl chr 3:8,873,933...8,908,438
JBrowse link
G Nup214 nucleoporin 214 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:9,227,869...9,236,878
NCBI chr 3:10,993,584...11,070,638
Ensembl chr 3:9,227,823...9,236,736
Ensembl chr 3:9,227,823...9,236,736
JBrowse link
G Nup62 nucleoporin 62 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:100,811,140...100,827,119
Ensembl chr 1:100,811,755...100,827,111
JBrowse link
G Nup62cl nucleoporin 62 C-terminal like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:111,333,274...111,390,023
Ensembl chr  X:111,334,252...111,365,849
JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) RGD PMID:11579093 MGI:2154056 NCBI chr 1:224,957,535...224,970,728
Ensembl chr 1:224,957,517...224,970,727
JBrowse link
G Nxf7 nuclear RNA export factor 7 acts_upstream_of_or_within ISO (MGI:3587445|PMID:16027110) RGD PMID:16027110 MGI:3587445 NCBI chr  X:106,049,075...106,066,334
Ensembl chr  X:106,049,075...106,066,227
JBrowse link
G Nxt1 nuclear transport factor 2-like export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) RGD PMID:11579093 MGI:2154056 NCBI chr 3:142,993,658...142,996,580
Ensembl chr 3:142,993,658...142,996,578
JBrowse link
G Pom121 POM121 transmembrane nucleoporin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,316,575...24,341,943
Ensembl chr12:24,324,590...24,341,938
JBrowse link
G Pom121l12 POM121 transmembrane nucleoporin-like 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:97,686,088...97,687,756
Ensembl chr14:97,686,121...97,686,936
JBrowse link
G Pom121l2 POM121 transmembrane nucleoporin-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,588,022...44,595,347
Ensembl chr17:44,588,045...44,595,323
JBrowse link
G Rae1 ribonucleic acid export 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:171,012,984...171,030,392
Ensembl chr 3:171,015,617...171,030,384
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISS
ISO
GO_REF:0000024
(PMID:11952838)
UniProt
RGD
PMID:11952838 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
G Xpo5 exportin 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) RGD PMID:20691904 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS
(PMID:9864356)
GO_REF:0000024
RGD
UniProt
PMID:9864356 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IBA
ISO
PMID:21873635
(MGI:4831049|PMID:20833368)
RGD PMID:20833368, PMID:21873635 MGI:4831049, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IMP
ISO
(PMID:17004321) RGD PMID:17004321, PMID:14523087 RGD:9685480 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Nxf7 nuclear RNA export factor 7 involved_in ISO (PMID:11566096) RGD PMID:11566096 NCBI chr  X:106,049,075...106,066,334
Ensembl chr  X:106,049,075...106,066,227
JBrowse link
G Sidt1 SID1 transmembrane family, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:61,320,480...61,416,560
Ensembl chr11:61,321,459...61,417,842
JBrowse link
G Sidt2 SID1 transmembrane family, member 2 involved_in IEA
ISO
ISS
IBA
GO_REF:0000107
(MGI:5908512|PMID:27046251), (MGI:5909194|PMID:28277980)
GO_REF:0000024
PMID:21873635
(PMID:28277980)
Ensembl
RGD
UniProt
PMID:27046251 PMID:28277980, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5908512 MGI:5909194, RGD:13792537 NCBI chr 8:50,230,335...50,246,979
Ensembl chr 8:50,230,339...50,246,656
JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISO
ISS
(PMID:29073095)
GO_REF:0000024
RGD
UniProt
PMID:29073095 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007744.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:26,869,828...26,870,421 JBrowse link
G AABR07025089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:28,072,014...28,166,296 JBrowse link
G AABR07041089.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:118,996,333...118,998,300 JBrowse link
G AABR07055527.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:4,951,747...4,952,584 JBrowse link
G Npm1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3822232|PMID:18809582)
RGD PMID:18809582, PMID:21873635 MGI:3822232, RGD:13792537 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO (PMID:17308101) RGD PMID:17308101 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrpl18 mitochondrial ribosomal protein L18 involved_in ISO (PMID:21685364) RGD PMID:21685364 NCBI chr 1:48,033,531...48,038,726
Ensembl chr 1:48,033,768...48,038,726
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) RGD PMID:20691904 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Tst thiosulfate sulfurtransferase involved_in ISS
ISO
GO_REF:0000024
(PMID:20663881)
UniProt
RGD
PMID:20663881 GO_REF:0000024 NCBI chr 7:119,616,323...119,623,072
Ensembl chr 7:119,616,324...119,623,072
JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tst thiosulfate sulfurtransferase involved_in ISO
ISS
(PMID:21685364)
GO_REF:0000024
RGD
UniProt
PMID:21685364 GO_REF:0000024 NCBI chr 7:119,616,323...119,623,072
Ensembl chr 7:119,616,324...119,623,072
JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 7:60,106,532...60,122,779
Ensembl chr 7:60,109,974...60,122,805
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr14:107,767,392...107,780,270
Ensembl chr14:107,767,392...107,780,270
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr 1:48,025,664...48,033,343
Ensembl chr 1:48,025,663...48,033,396
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
ISS
(PMID:19285445), (PMID:25467444)
GO_REF:0000024
RGD
UniProt
PMID:19285445 PMID:25467444 GO_REF:0000024 NCBI chr10:56,169,024...56,185,800
Ensembl chr10:56,169,025...56,185,857
JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:85,103,519...85,112,619
Ensembl chr 1:85,103,519...85,112,619
JBrowse link
G Nop58 NOP58 ribonucleoprotein involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 9:66,495,881...66,520,521
Ensembl chr 9:66,495,832...66,519,788
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Prpf31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,227,710...72,235,932
Ensembl chr10:72,228,222...72,235,888
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA
ISO
PMID:21873635
(PMID:17636026)
RGD PMID:17636026, PMID:21873635 RGD:13792537 NCBI chr 2:251,453,503...251,484,760
Ensembl chr 2:251,453,644...251,484,759
JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Phax phosphorylated adaptor for RNA export involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1891494|PMID:10786834)
RGD PMID:10786834, PMID:21873635 MGI:1891494, RGD:13792537 NCBI chr18:51,662,294...51,678,981
Ensembl chr18:51,662,294...51,678,980
JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ran RAN, member RAS oncogene family involved_in ISO
ISS
(PMID:8636225)
GO_REF:0000024
RGD
UniProt
PMID:8636225 GO_REF:0000024 NCBI chr12:31,319,556...31,324,105
Ensembl chr12:31,320,624...31,323,810
JBrowse link
G Snupn snurportin 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:61,614,798...61,654,809
Ensembl chr 8:61,615,650...61,648,390
JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO (PMID:25467444) RGD PMID:25467444 NCBI chr10:56,169,024...56,185,800
Ensembl chr10:56,169,025...56,185,857
JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nol6 nucleolar protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:57,444,448...57,473,803
Ensembl chr 5:57,445,344...57,455,018
JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:17308035) RGD PMID:17308035 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
G Xpot exportin for tRNA involved_in ISO (PMID:9660920) RGD PMID:9660920 NCBI chr 7:63,688,646...63,728,988
Ensembl chr 7:63,690,053...63,728,988
JBrowse link
tRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC128303.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:93,539,271...93,651,154 JBrowse link
G Tomm20 translocase of outer mitochondrial membrane 20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,863,421...59,873,411
Ensembl chr19:59,863,421...59,873,411
JBrowse link
tRNA re-export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpot exportin for tRNA involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:63,688,646...63,728,988
Ensembl chr 7:63,690,053...63,728,988
JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:29073095)
UniProt
RGD
PMID:29073095 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    localization 6443
      macromolecule localization 3012
        RNA localization 173
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 136
          intracellular mRNA localization + 15
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 6
          telomerase RNA localization + 19
paths to the root