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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
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Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization


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RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 ISO RGD PMID:14614102 RGD:1299544 NCBI chr 9:25,199,287...25,240,693
Ensembl chr 9:25,198,805...25,240,578
JBrowse link
G PRPF6 pre-mRNA processing factor 6 acts_upstream_of_or_within ISO (PMID:20797886) MGI PMID:20797886 NCBI chr24:47,439,210...47,483,531
Ensembl chr24:47,433,130...47,483,522
JBrowse link
G YY1 YY1 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5051946|PMID:21729784) Ensembl
MGI
PMID:21729784 GO_REF:0000107 MGI:5051946 NCBI chr 8:68,539,511...68,572,796
Ensembl chr 8:68,539,353...68,568,058
JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLOT1 flotillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:517,941...528,677
Ensembl chr12:516,032...528,637
JBrowse link
G RFTN1 raftlin, lipid raft linker 1 acts_upstream_of_or_within ISO (PMID:21266579) MGI PMID:21266579 NCBI chr23:26,272,103...26,472,610
Ensembl chr23:26,282,392...26,472,536
JBrowse link
G RFTN2 raftlin family member 2 acts_upstream_of_or_within ISO (MGI:4947923|PMID:21266579) MGI PMID:21266579 MGI:4947923 NCBI chr37:7,074,597...7,169,512
Ensembl chr37:7,074,586...7,152,714
JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G ATR ATR serine/threonine kinase involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chr23:38,131,956...38,223,888
Ensembl chr23:38,132,788...38,224,016
JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASC3 CASC3 exon junction complex subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2683131|PMID:12843282) Ensembl
MGI
PMID:12843282 GO_REF:0000107 MGI:2683131 NCBI chr 9:22,403,139...22,427,475
Ensembl chr 9:22,405,336...22,427,426
JBrowse link
G STAU1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) MGI PMID:12843282 MGI:2683131 NCBI chr24:35,816,224...35,868,791
Ensembl chr24:35,817,664...35,860,021
JBrowse link
G ZNF385A zinc finger protein 385A acts_upstream_of_or_within ISO (MGI:3610775|PMID:16286649) MGI PMID:16286649 MGI:3610775 NCBI chr27:928,250...948,275
Ensembl chr27:928,349...947,186
JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:24356509) UniProt PMID:24356509 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in ISO (MGI:6099018|PMID:25801897) BHF-UCL PMID:25801897 MGI:6099018 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636
JBrowse link
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:27559612) UniProt PMID:27559612 NCBI chr15:646,301...666,347
Ensembl chr15:646,584...666,329
JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH5 alkB homolog 5, RNA demethylase involved_in ISO (PMID:23177736) UniProt PMID:23177736 NCBI chr 5:41,339,292...41,365,641
Ensembl chr 5:41,343,241...41,364,547
JBrowse link
G ALYREF Aly/REF export factor involved_in ISO (PMID:17190602), (PMID:25662211) UniProt PMID:17190602 PMID:25662211 NCBI chr 9:398,207...402,787
Ensembl chr 9:399,072...402,721
JBrowse link
G CHTOP chromatin target of PRMT1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:43,418,902...43,428,012
Ensembl chr 7:43,419,707...43,427,856
JBrowse link
G DDX25 DEAD-box helicase 25 involved_in ISO (MGI:3696333|PMID:16968703) UniProt PMID:16968703 MGI:3696333 NCBI chr 5:8,566,748...8,585,965
Ensembl chr 5:8,566,754...8,586,020
JBrowse link
G DDX39A DExD-box helicase 39A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,196,350...48,204,667
Ensembl chr20:48,196,330...48,204,664
JBrowse link
G DDX39B DExD-box helicase 39B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:1,032,377...1,044,465
Ensembl chr12:1,032,368...1,044,492
JBrowse link
G FYTTD1 forty-two-three domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:28,920,361...28,947,111
Ensembl chr33:28,920,361...28,945,707
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (PMID:12554669) BHF-UCL PMID:12554669 NCBI chr28:7,057,379...7,063,326
Ensembl chr28:7,057,283...7,063,330
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:10567417
PMID:9578590
(PMID:10567417)
UniProt PMID:9578590 PMID:10567417 RGD:9685424 RGD:9685477 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,938,250...54,974,536
Ensembl chr11:54,938,372...54,974,547
JBrowse link
G NUP107 nucleoporin 107 involved_in ISO (PMID:11684705) UniProt PMID:11684705 NCBI chr10:10,838,881...10,887,347
Ensembl chr10:10,838,944...10,887,197
JBrowse link
G NUP133 nucleoporin 133 involved_in ISO (PMID:11684705) UniProt PMID:11684705 NCBI chr 4:9,751,902...9,805,796
Ensembl chr 4:9,751,986...9,805,033
JBrowse link
G NUP155 nucleoporin 155 acts_upstream_of_or_within ISO (MGI:3839697|PMID:19070573) MGI PMID:19070573 MGI:3839697 NCBI chr 4:71,340,109...71,409,286
Ensembl chr 4:71,340,168...71,408,038
JBrowse link
G NUP160 nucleoporin 160 involved_in ISO (PMID:11684705)
(MGI:3690169|PMID:11684705)
UniProt PMID:11684705 MGI:3690169 NCBI chr18:41,859,697...41,902,677
Ensembl chr18:41,855,670...41,902,247
JBrowse link
G NUP214 nucleoporin 214 acts_upstream_of_or_within
involved_in
ISO (MGI:83941|PMID:8896451)
(PMID:10557333)
MGI
UniProt
PMID:8896451 PMID:10557333 MGI:83941 NCBI chr 9:52,840,300...52,943,785
Ensembl chr 9:52,841,096...52,947,770
JBrowse link
G NUP88 nucleoporin 88 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:31,366,213...31,389,780
Ensembl chr 5:31,366,244...31,389,780
JBrowse link
G NXF1 nuclear RNA export factor 1 involved_in ISO (PMID:19165146), (PMID:28984244) UniProt PMID:19165146 PMID:28984244 NCBI chr18:53,884,512...53,895,168
Ensembl chr18:53,884,546...53,895,162
JBrowse link
G NXF3 nuclear RNA export factor 3 involved_in ISO (PMID:11545741) UniProt PMID:11545741
G RAE1 ribonucleic acid export 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr24:42,364,559...42,385,209
Ensembl chr24:42,345,547...42,384,481
JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) UniProt PMID:19586903 MGI:6158828 NCBI chr20:38,191,079...38,194,150
Ensembl chr20:38,191,439...38,192,730
JBrowse link
G SARNP SAP domain containing ribonucleoprotein involved_in ISO (PMID:20844015) UniProt PMID:20844015 NCBI chr10:153,682...203,598
Ensembl chr10:153,766...203,509
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,677,879...5,686,220
Ensembl chr12:5,677,907...5,684,446
JBrowse link
G THOC1 THO complex 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:67,082,100...67,136,592
Ensembl chr 7:67,082,231...67,136,525
JBrowse link
G THOC2 THO complex 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:95,087,209...95,217,450
Ensembl chr  X:95,095,711...95,199,747
JBrowse link
G THOC3 THO complex 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:37,130,944...37,151,479
Ensembl chr 4:37,057,940...37,199,448
Ensembl chr 4:37,057,940...37,199,448
JBrowse link
G THOC5 THO complex 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:22,748,857...22,785,288
Ensembl chr26:22,748,895...22,784,143
JBrowse link
G THOC6 THO complex 6 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chr 6:38,161,506...38,164,287
Ensembl chr 6:38,161,474...38,164,402
JBrowse link
G THOC7 THO complex 7 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chr20:27,367,628...27,390,868
Ensembl chr20:27,382,568...27,390,235
JBrowse link
G YTHDC1 YTH domain containing 1 involved_in ISO (PMID:28984244) UniProt PMID:28984244 NCBI chr13:58,818,424...58,858,241
Ensembl chr13:58,818,796...58,857,571
JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR2D RNA polymerase II subunit D involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:22,754,118...22,774,054
Ensembl chr19:22,754,141...22,774,231
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:17897941) UniProt PMID:17897941 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
mRNA localization resulting in posttranscriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1CF APOBEC1 complementation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4943819|PMID:20541607) Ensembl
MGI
PMID:20541607 GO_REF:0000107 MGI:4943819 NCBI chr26:37,027,165...37,109,842
Ensembl chr26:37,027,275...37,102,888
JBrowse link
G CKAP5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (MGI:5823498|PMID:28063167) MGI PMID:28063167 MGI:5823498 NCBI chr18:42,673,432...42,780,320
Ensembl chr18:42,711,471...42,780,090
JBrowse link
G ZNF385A zinc finger protein 385A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610775|PMID:16286649) Ensembl
MGI
PMID:16286649 GO_REF:0000107 MGI:3610775 NCBI chr27:928,250...948,275
Ensembl chr27:928,349...947,186
JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARC activity regulated cytoskeleton associated protein involved_in ISO PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chr13:36,743,027...36,744,266 JBrowse link
G CASC3 CASC3 exon junction complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:22,403,139...22,427,475
Ensembl chr 9:22,405,336...22,427,426
JBrowse link
G CPEB1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:12629046 RGD:9685156 NCBI chr 3:54,405,140...54,499,614
Ensembl chr 3:54,405,717...54,500,221
JBrowse link
G EIF5A eukaryotic translation initiation factor 5A involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:32,268,103...32,272,970 JBrowse link
G FMR1 FMRP translational regulator 1 involved_in ISO (MGI:3798322|PMID:18539120) UniProt PMID:18539120 MGI:3798322 NCBI chr  X:116,249,079...116,287,008
Ensembl chr  X:116,249,142...116,321,439
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:11886857 RGD:625404 NCBI chr36:20,974,541...20,983,972
Ensembl chr36:20,974,648...20,980,137
JBrowse link
G HTT huntingtin ISO RGD PMID:22355657 RGD:6902916 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:25,199,287...25,240,693
Ensembl chr 9:25,198,805...25,240,578
JBrowse link
G IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:36,969,128...37,120,609
Ensembl chr14:36,971,420...37,120,193
JBrowse link
G KIF5C kinesin family member 5C involved_in ISO (MGI:4413400|PMID:19608740) UniProt PMID:19608740 MGI:4413400 NCBI chr19:50,535,622...50,684,485
Ensembl chr19:50,535,456...50,668,738
JBrowse link
G MAPT microtubule associated protein tau ISO RGD PMID:25847153 RGD:11061097 NCBI chr 9:9,572,174...9,674,082
Ensembl chr 9:9,570,557...9,674,349
JBrowse link
G NDC1 NDC1 transmembrane nucleoporin involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:55,161,079...55,207,969
Ensembl chr 5:55,160,743...55,455,423
JBrowse link
G NUP35 nucleoporin 35 involved_in IEA UniProt GO_REF:0000104 NCBI chr36:26,128,838...26,168,664
Ensembl chr36:26,135,065...26,168,298
JBrowse link
G NUP85 nucleoporin 85 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:5,251,387...5,298,096
Ensembl chr 9:5,251,419...5,285,338
JBrowse link
G NUP98 nucleoporin 98 and 96 precursor involved_in IEA UniProt GO_REF:0000043 NCBI chr21:26,231,585...26,348,019
Ensembl chr21:26,220,963...26,336,020
JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714
JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA UniProt GO_REF:0000043 NCBI chr17:58,722,449...58,726,017
Ensembl chr17:58,724,227...58,725,969
JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA UniProt GO_REF:0000043 NCBI chr20:8,041,485...8,075,078
Ensembl chr20:8,041,544...8,075,076
JBrowse link
G SLBP stem-loop binding protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:62,386,982...62,401,541
Ensembl chr 3:62,386,977...62,400,891
JBrowse link
G SLBP2 uncharacterized LOC474694 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:25,935,773...25,939,846
Ensembl chr11:25,935,848...25,939,743
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUP153 nucleoporin 153 involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chr35:16,517,992...16,598,472
Ensembl chr35:16,519,109...16,589,537
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:21613532)
(PMID:22253824)
UniProt PMID:21613532 PMID:22253824 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCID2 PCI domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:60,602,440...60,623,811
Ensembl chr22:60,602,888...60,623,719
JBrowse link
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC3 exosome component 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:54,072,993...54,079,024
Ensembl chr11:54,073,313...54,078,598
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in ISO (PMID:20699273) UniProt PMID:20699273 NCBI chr 2:84,942,801...84,964,129
Ensembl chr 2:84,942,777...84,964,130
JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX19A DEAD-box helicase 19A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:76,343,328...76,365,443
Ensembl chr 5:76,314,725...76,364,587
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in ISO (PMID:23591820) UniProt PMID:23591820 NCBI chr13:9,895,537...9,905,081
Ensembl chr13:9,895,630...9,905,301
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:7,057,379...7,063,326
Ensembl chr28:7,057,283...7,063,330
JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:23,081,625...23,122,618
Ensembl chr19:23,082,096...23,122,618
JBrowse link
G MCM3AP minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23591820) UniProt PMID:23591820 NCBI chr31:39,507,714...39,559,855
Ensembl chr31:39,507,729...39,561,674
JBrowse link
G NUP133 nucleoporin 133 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:9,751,902...9,805,796
Ensembl chr 4:9,751,986...9,805,033
JBrowse link
G NXF1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chr18:53,884,512...53,895,168
Ensembl chr18:53,884,546...53,895,162
JBrowse link
G NXF3 nuclear RNA export factor 3 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625
G PABPN1 poly(A) binding protein nuclear 1 involved_in ISO (PMID:19364924) UniProt PMID:19364924 NCBI chr 8:3,580,768...3,585,546
Ensembl chr 8:3,569,399...3,586,070
JBrowse link
G PCID2 PCI domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:60,602,440...60,623,811
Ensembl chr22:60,602,888...60,623,719
JBrowse link
G POLDIP3 DNA polymerase delta interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,853,321...22,878,098
Ensembl chr10:22,853,409...22,874,764
JBrowse link
G THOC2 THO complex 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:95,087,209...95,217,450
Ensembl chr  X:95,095,711...95,199,747
JBrowse link
G ZC3H11A zinc finger CCCH-type containing 11A involved_in ISO (PMID:22928037) UniProt PMID:22928037 NCBI chr38:477,900...505,754 JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 involved_in ISO PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPSF6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:19864460) UniProt PMID:19864460 NCBI chr10:11,265,044...11,297,395
Ensembl chr10:11,262,265...11,292,832
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (PMID:21613532) UniProt PMID:21613532 NCBI chr 2:69,108,822...69,148,067
Ensembl chr 2:69,123,663...69,148,073
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) UniProt PMID:30842217 NCBI chr 8:61,285,998...61,332,518
Ensembl chr 8:61,286,950...61,332,431
JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCT2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:11,560,287...11,586,559
Ensembl chr10:11,560,396...11,578,433
JBrowse link
G CCT3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 7:41,566,274...41,583,903
Ensembl chr 7:41,566,292...41,584,863
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:61,859,148...61,874,030
Ensembl chr10:61,859,245...61,874,389
JBrowse link
G CCT5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr34:4,035,851...4,049,131
Ensembl chr34:4,035,857...4,049,244
JBrowse link
G CCT6A chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 6:546,278...556,996
Ensembl chr 6:546,307...557,001
JBrowse link
G CCT8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr31:24,061,185...24,075,002
Ensembl chr31:24,061,252...24,075,364
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G LOC100856782 T-complex protein 1 subunit eta involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr34:37,026,053...37,027,839 JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr15:59,430,809...59,470,306 JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr11:3,389,549...3,393,010
Ensembl chr11:3,389,591...3,395,313
JBrowse link
G NOP10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr30:766,801...767,615
Ensembl chr30:766,853...767,613
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr20:2,095,807...2,137,528
Ensembl chr20:2,095,786...2,137,579
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 1:107,384,328...107,400,849
Ensembl chr 1:107,384,342...107,400,505
JBrowse link
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr20:19,304,839...19,406,662
Ensembl chr20:19,304,934...19,405,950
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,029,260...49,038,023
Ensembl chr 1:49,029,282...49,038,020
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC442976 RAN, member RAS oncogene family involved_in NAS (PMID:19965479) UniProt PMID:19965479 NCBI chr30:22,170,896...22,171,572 JBrowse link
G RAN RAN, member RAS oncogene family involved_in NAS (PMID:19965479) UniProt PMID:19965479 NCBI chr26:1,435,077...1,436,893
Ensembl chr26:1,434,720...1,436,993
JBrowse link
G XPO5 exportin 5 involved_in ISO (PMID:14681208)
(PMID:15613540)
BHF-UCL PMID:14681208 PMID:15613540 NCBI chr12:11,983,071...12,034,441
Ensembl chr12:11,983,646...12,034,688
JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chr11:3,355,051...3,360,376
Ensembl chr11:3,355,050...3,360,258
JBrowse link
G HTT huntingtin ISO RGD PMID:20185826 RGD:10403027 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8L A-kinase anchoring protein 8 like involved_in ISO (PMID:11402034) UniProt PMID:11402034 NCBI chr20:46,773,585...46,800,544
Ensembl chr20:46,747,062...46,817,240
JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,081,625...23,122,618
Ensembl chr19:23,082,096...23,122,618
JBrowse link
G NSUN2 NOP2/Sun RNA methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:7,145,176...7,172,761
Ensembl chr34:7,144,586...7,172,335
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487
JBrowse link
G THOC2 THO complex 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5529717|PMID:24315442) Ensembl
MGI
PMID:24315442 GO_REF:0000107 MGI:5529717 NCBI chr  X:95,087,209...95,217,450
Ensembl chr  X:95,095,711...95,199,747
JBrowse link
G THOC5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chr26:22,748,857...22,785,288
Ensembl chr26:22,748,895...22,784,143
JBrowse link
G TPR translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 acts_upstream_of_or_within ISO (MGI:2446384|PMID:12496368) MGI PMID:12496368 MGI:2446384 NCBI chr 2:69,108,822...69,148,067
Ensembl chr 2:69,123,663...69,148,073
JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,256,772...35,298,974
Ensembl chr 4:35,256,970...35,299,021
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G EXOSC10 exosome component 10 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr 2:84,942,801...84,964,129
Ensembl chr 2:84,942,777...84,964,130
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr 6:28,629,137...28,783,671
Ensembl chr 6:28,629,174...28,783,901
JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:28418038) UniProt PMID:28418038 NCBI chr 9:398,207...402,787
Ensembl chr 9:399,072...402,721
JBrowse link
G NUP188 nucleoporin 188 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:54,657,520...54,712,900
Ensembl chr 9:54,657,682...54,712,827
JBrowse link
G NXF1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) MGI PMID:11579093 MGI:2154056 NCBI chr18:53,884,512...53,895,168
Ensembl chr18:53,884,546...53,895,162
JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) MGI PMID:11579093 MGI:2154056 NCBI chr24:295,064...299,316 JBrowse link
G RAE1 ribonucleic acid export 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:42,364,559...42,385,209
Ensembl chr24:42,345,547...42,384,481
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:11952838) UniProt PMID:11952838 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) UniProt PMID:20691904 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein involved_in ISO (PMID:9864356) UniProt PMID:9864356 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in ISO (MGI:4831049|PMID:20833368) UniProt PMID:20833368 MGI:4831049 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:17004321) RGD
HGNC-UCL
PMID:14523087 PMID:17004321 RGD:9685480 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G SIDT2 SID1 transmembrane family member 2 involved_in ISO (MGI:5908512|PMID:27046251), (MGI:5909194|PMID:28277980)
(PMID:28277980)
UniProt PMID:27046251 PMID:28277980 MGI:5908512 MGI:5909194 NCBI chr 5:16,397,532...16,410,827
Ensembl chr 5:16,398,815...16,411,268
JBrowse link
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chr15:646,301...666,347
Ensembl chr15:646,584...666,329
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3822232|PMID:18809582)
GO_Central
MGI
PMID:18809582 PMID:21873635 MGI:3822232 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G TSC1 TSC complex subunit 1 involved_in ISO (PMID:17308101) UniProt PMID:17308101 NCBI chr 9:51,409,307...51,459,546
Ensembl chr 9:51,425,937...51,454,677
JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRPL18 mitochondrial ribosomal protein L18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,038,814...49,043,667
Ensembl chr 1:49,038,871...49,043,501
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) UniProt PMID:20691904 NCBI chr10:56,478,771...56,520,992
Ensembl chr10:56,478,680...56,520,967
JBrowse link
G TST thiosulfate sulfurtransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:27,474,101...27,486,603
Ensembl chr10:27,473,764...27,486,575
JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TST thiosulfate sulfurtransferase involved_in ISO (PMID:21685364) UniProt PMID:21685364 NCBI chr10:27,474,101...27,486,603
Ensembl chr10:27,473,764...27,486,575
JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCT2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr10:11,560,287...11,586,559
Ensembl chr10:11,560,396...11,578,433
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:61,859,148...61,874,030
Ensembl chr10:61,859,245...61,874,389
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,838,787...122,850,870
Ensembl chr  X:122,838,645...122,850,884
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,029,260...49,038,023
Ensembl chr 1:49,029,282...49,038,020
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:19285445)
(PMID:25467444)
UniProt
BHF-UCL
PMID:19285445 PMID:25467444 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBL fibrillarin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,632,899...113,643,805
Ensembl chr 1:113,632,929...113,643,748
JBrowse link
G NOP58 NOP58 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:11,255,562...11,287,325
Ensembl chr37:11,255,589...11,287,279
JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chr 1:107,045,466...107,051,281
Ensembl chr 1:107,045,697...107,051,236
JBrowse link
G PRPF31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chr 1:103,073,359...103,090,652
Ensembl chr 1:103,073,380...103,090,652
JBrowse link
G ZNHIT3 zinc finger HIT-type containing 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:36,378,226...36,383,906
Ensembl chr 9:36,378,211...36,383,966
JBrowse link
G ZNHIT6 zinc finger HIT-type containing 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:62,335,344...62,393,418
Ensembl chr 6:62,335,275...62,418,564
JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC611908 phosphorylated adapter RNA export protein-like acts_upstream_of_or_within ISO (MGI:1891494|PMID:10786834) MGI PMID:10786834 MGI:1891494 NCBI chr 4:49,155,408...49,157,318 JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC442976 RAN, member RAS oncogene family involved_in ISS UniProt GO_REF:0000024 NCBI chr30:22,170,896...22,171,572 JBrowse link
G RAN RAN, member RAS oncogene family involved_in ISS UniProt GO_REF:0000024 NCBI chr26:1,435,077...1,436,893
Ensembl chr26:1,434,720...1,436,993
JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WRAP53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOL6 nucleolar protein 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:50,533,150...50,544,770
Ensembl chr11:50,533,453...50,545,094
JBrowse link
G SSB small RNA binding exonuclease protection factor La involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:14,465,088...14,476,786
Ensembl chr36:14,465,129...14,476,609
JBrowse link
G XPOT exportin for tRNA involved_in ISO (PMID:9660920) UniProt PMID:9660920 NCBI chr10:7,121,275...7,163,692
Ensembl chr10:7,121,684...7,213,139
JBrowse link
tRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOMM20 translocase of outer mitochondrial membrane 20 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:4,785,589...4,802,170
Ensembl chr 4:4,785,584...4,801,006
JBrowse link
tRNA re-export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPOT exportin for tRNA involved_in IEA UniProt GO_REF:0000104 NCBI chr10:7,121,275...7,163,692
Ensembl chr10:7,121,684...7,213,139
JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chr15:646,301...666,347
Ensembl chr15:646,584...666,329
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13872
    localization 5406
      macromolecule localization 2528
        RNA localization 129
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 94
          intracellular mRNA localization + 13
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 6
          telomerase RNA localization + 19
paths to the root