Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
go back to main search page
Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization


GViewer not supported for chinchilla.
show annotations for term's descendants           Sort by:
 
RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO RGD PMID:14614102 RGD:1299544 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:5051946|PMID:21729784) MGI PMID:21729784 MGI:5051946 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flot1 flotillin 1 involved_in ISO (PMID:25204797) UniProt PMID:25204797 NCBI chrNW_004955583:717,246...729,924
Ensembl chrNW_004955583:713,560...729,924
JBrowse link
G Rftn1 raftlin, lipid raft linker 1 acts_upstream_of_or_within ISO (PMID:21266579) MGI PMID:21266579 NCBI chrNW_004955430:8,605,057...8,801,187
Ensembl chrNW_004955430:8,603,401...8,779,896
JBrowse link
G Rftn2 raftlin family member 2 acts_upstream_of_or_within ISO (MGI:4947923|PMID:21266579) MGI PMID:21266579 MGI:4947923 NCBI chrNW_004955403:2,982,753...3,030,594
Ensembl chrNW_004955403:2,983,270...3,030,643
JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chrNW_004955508:3,337,036...3,440,313
Ensembl chrNW_004955508:3,337,432...3,440,257
JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) MGI PMID:12843282 MGI:2683131 NCBI chrNW_004955451:14,784,915...14,804,191
Ensembl chrNW_004955451:14,784,915...14,806,773
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) MGI PMID:12843282 MGI:2683131 NCBI chrNW_004955445:8,971,585...9,003,647 JBrowse link
G Znf385a zinc finger protein 385A acts_upstream_of_or_within ISO (MGI:3610775|PMID:16286649) MGI PMID:16286649 MGI:3610775 NCBI chrNW_004955458:1,610,245...1,631,639
Ensembl chrNW_004955458:1,610,245...1,631,639
JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:24356509) UniProt PMID:24356509 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (MGI:6099018|PMID:25801897) BHF-UCL PMID:25801897 MGI:6099018 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:27559612) UniProt PMID:27559612 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO (PMID:23177736) UniProt PMID:23177736 NCBI chrNW_004955478:11,104,445...11,128,980
Ensembl chrNW_004955478:11,105,920...11,128,222
JBrowse link
G Alyref Aly/REF export factor involved_in ISO (PMID:17190602), (PMID:25662211) UniProt PMID:17190602 PMID:25662211 NCBI chrNW_004955506:1,278,230...1,282,064
Ensembl chrNW_004955506:1,278,471...1,281,772
JBrowse link
G Chtop chromatin target of PRMT1 involved_in ISO (PMID:23299939) UniProt PMID:23299939 NCBI chrNW_004955545:282,342...292,428
Ensembl chrNW_004955545:282,342...292,785
JBrowse link
G Ddx25 DEAD-box helicase 25 involved_in ISO (MGI:3696333|PMID:16968703) UniProt PMID:16968703 MGI:3696333 NCBI chrNW_004955412:26,952,655...26,973,758
Ensembl chrNW_004955412:26,952,239...26,972,100
JBrowse link
G Ddx39a DExD-box helicase 39A involved_in ISO (PMID:15047853) UniProt PMID:15047853 NCBI chrNW_004955415:33,021,976...33,030,479
Ensembl chrNW_004955415:33,019,997...33,030,177
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:17190602)
(PMID:15047853)
UniProt PMID:15047853 PMID:17190602 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384
JBrowse link
G Fyttd1 forty-two-three domain containing 1 involved_in ISO (PMID:19836239) UniProt PMID:19836239 NCBI chrNW_004955420:12,095,055...12,123,900 JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) BHF-UCL PMID:12554669 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:10567417)
PMID:9578590
UniProt PMID:9578590 PMID:10567417 RGD:9685424 RGD:9685477 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:17190602), (PMID:26382858) UniProt PMID:17190602 PMID:26382858 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878
JBrowse link
G Nup107 nucleoporin 107 involved_in ISO (PMID:11684705) UniProt PMID:11684705 NCBI chrNW_004955458:15,148,773...15,201,717
Ensembl chrNW_004955458:15,149,054...15,201,635
JBrowse link
G Nup133 nucleoporin 133 involved_in ISO (PMID:11684705) UniProt PMID:11684705 NCBI chrNW_004955492:8,583,902...8,641,891
Ensembl chrNW_004955492:8,583,869...8,643,433
JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within ISO (MGI:3839697|PMID:19070573) MGI PMID:19070573 MGI:3839697 NCBI chrNW_004955426:21,997,208...22,057,205
Ensembl chrNW_004955426:21,997,208...22,057,205
JBrowse link
G Nup160 nucleoporin 160 involved_in ISO (PMID:11684705)
(MGI:3690169|PMID:11684705)
UniProt PMID:11684705 MGI:3690169 NCBI chrNW_004955422:561,339...598,598
Ensembl chrNW_004955422:561,339...599,575
JBrowse link
G Nup214 nucleoporin 214 involved_in
acts_upstream_of_or_within
ISO (PMID:10557333)
(MGI:83941|PMID:8896451)
UniProt
MGI
PMID:8896451 PMID:10557333 MGI:83941 NCBI chrNW_004955513:955,639...1,038,912 JBrowse link
G Nxf1 nuclear RNA export factor 1 involved_in ISO (PMID:19165146), (PMID:28984244) UniProt PMID:19165146 PMID:28984244 NCBI chrNW_004955599:439,773...450,834
Ensembl chrNW_004955599:439,775...454,300
JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) UniProt PMID:19586903 MGI:6158828 NCBI chrNW_004955532:3,080,207...3,082,312 JBrowse link
G Sarnp SAP domain containing ribonucleoprotein involved_in ISO (PMID:20844015) UniProt PMID:20844015 NCBI chrNW_004955458:3,396,443...3,451,193 JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:28984244) UniProt PMID:28984244 NCBI chrNW_004955437:6,306,151...6,314,332
Ensembl chrNW_004955437:6,306,151...6,314,332
JBrowse link
G Thoc1 THO complex 1 involved_in ISO (PMID:22144908)
(PMID:17190602)
UniProt PMID:17190602 PMID:22144908 NCBI chrNW_004955402:9,675,211...9,708,045
Ensembl chrNW_004955402:9,675,204...9,708,045
JBrowse link
G Thoc2 THO complex 2 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004955473:11,029,860...11,143,493
Ensembl chrNW_004955473:11,029,714...11,144,880
JBrowse link
G Thoc3 THO complex 3 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004955408:28,467,540...28,480,613
Ensembl chrNW_004955408:28,467,540...28,480,613
JBrowse link
G Thoc5 THO complex 5 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004955455:3,761,933...3,795,517
Ensembl chrNW_004955455:3,761,874...3,795,517
JBrowse link
G Thoc6 THO complex 6 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004955442:14,314,100...14,317,726
Ensembl chrNW_004955442:14,314,100...14,317,724
JBrowse link
G Thoc7 THO complex 7 involved_in ISO (PMID:17190602) UniProt PMID:17190602 NCBI chrNW_004955517:2,037,406...2,046,694
Ensembl chrNW_004955517:2,027,281...2,046,694
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISO (PMID:28984244) UniProt PMID:28984244 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913
JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein involved_in ISO (PMID:17897941) UniProt PMID:17897941 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
mRNA localization resulting in posttranscriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor acts_upstream_of_or_within ISO (MGI:4943819|PMID:20541607) MGI PMID:20541607 MGI:4943819 NCBI chrNW_004955425:5,992,538...6,077,769
Ensembl chrNW_004955425:5,992,538...6,077,770
JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (MGI:5823498|PMID:28063167) MGI PMID:28063167 MGI:5823498 NCBI chrNW_004955422:1,266,686...1,354,323
Ensembl chrNW_004955422:1,279,158...1,353,894
JBrowse link
G Znf385a zinc finger protein 385A acts_upstream_of_or_within ISO (MGI:3610775|PMID:16286649) MGI PMID:16286649 MGI:3610775 NCBI chrNW_004955458:1,610,245...1,631,639
Ensembl chrNW_004955458:1,610,245...1,631,639
JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeleton associated protein involved_in ISO PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chrNW_004955454:1,379,998...1,383,414
Ensembl chrNW_004955454:1,379,998...1,383,414
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:12629046 RGD:9685156 NCBI chrNW_004955416:13,963,300...14,038,691
Ensembl chrNW_004955416:13,981,657...14,039,705
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO (MGI:3798322|PMID:18539120) UniProt PMID:18539120 MGI:3798322 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:11886857 RGD:625404 NCBI chrNW_004955403:19,540,814...19,548,417
Ensembl chrNW_004955403:19,544,842...19,548,417
JBrowse link
G Htt huntingtin ISO RGD PMID:22355657 RGD:6902916 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
G Kif5c kinesin family member 5C involved_in ISO (MGI:4413400|PMID:19608740) UniProt PMID:19608740 MGI:4413400 NCBI chrNW_004955440:14,754,931...14,854,090
Ensembl chrNW_004955440:14,754,639...14,854,406
JBrowse link
G Mapt microtubule associated protein tau ISO RGD PMID:25847153 RGD:11061097 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
JBrowse link
G Slbp stem-loop binding protein involved_in ISO (PMID:19155325) UniProt PMID:19155325 NCBI chrNW_004955514:954,489...968,670
Ensembl chrNW_004955514:955,296...967,327
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chrNW_004955444:7,103,282...7,149,450
Ensembl chrNW_004955444:7,103,552...7,150,323
JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nup153 nucleoporin 153 involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chrNW_004955483:8,377,253...8,457,018
Ensembl chrNW_004955483:8,388,066...8,455,965
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO (PMID:22253824)
(PMID:21613532)
UniProt PMID:21613532 PMID:22253824 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO (PMID:20699273) UniProt PMID:20699273 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eny2 ENY2 transcription and export complex 2 subunit involved_in ISO (PMID:23591820) UniProt PMID:23591820 NCBI chrNW_004955417:16,750,563...16,760,839
Ensembl chrNW_004955417:16,750,579...16,760,839
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:12554669) BHF-UCL PMID:12554669 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23591820) UniProt PMID:23591820 NCBI chrNW_004955407:42,657,422...42,706,339
Ensembl chrNW_004955407:42,657,588...42,705,315
JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chrNW_004955599:439,773...450,834
Ensembl chrNW_004955599:439,775...454,300
JBrowse link
G Pabpn1 poly(A) binding protein nuclear 1 involved_in ISO (PMID:19364924) UniProt PMID:19364924 NCBI chrNW_004955409:37,000,423...37,004,823
Ensembl chrNW_004955409:37,000,451...37,004,682
JBrowse link
G Poldip3 DNA polymerase delta interacting protein 3 involved_in ISO (PMID:22928037)
(MGI:5520029|PMID:22928037)
UniProt PMID:22928037 MGI:5520029 NCBI chrNW_004955413:27,944,109...27,968,156
Ensembl chrNW_004955413:27,943,520...27,968,156
JBrowse link
G Thoc2 THO complex 2 involved_in ISO (PMID:22928037) UniProt PMID:22928037 NCBI chrNW_004955473:11,029,860...11,143,493
Ensembl chrNW_004955473:11,029,714...11,144,880
JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A involved_in ISO (PMID:22928037) UniProt PMID:22928037 NCBI chrNW_004955406:39,678,544...39,718,062 JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISO PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (PMID:17369404) UniProt PMID:17369404 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:19864460) UniProt PMID:19864460 NCBI chrNW_004955458:15,684,040...15,708,011
Ensembl chrNW_004955458:15,677,645...15,708,011
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:11402034) UniProt PMID:11402034 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (PMID:21613532) UniProt PMID:21613532 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) UniProt PMID:30842217 NCBI chrNW_004955438:12,726,206...12,780,364
Ensembl chrNW_004955438:12,726,357...12,780,379
JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955405:9,892,089...9,904,407
Ensembl chrNW_004955405:9,892,116...9,904,407
JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955545:2,444,988...2,460,976
Ensembl chrNW_004955545:2,444,988...2,461,113
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955424:22,088,949...22,108,514
Ensembl chrNW_004955424:22,088,949...22,108,514
JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955426:132,106...144,251
Ensembl chrNW_004955426:131,871...144,354
JBrowse link
G Cct6a chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955456:8,223,785...8,236,760
Ensembl chrNW_004955456:8,223,774...8,237,966
JBrowse link
G Cct7 chaperonin containing TCP1 subunit 7 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955424:12,379,222...12,402,161 JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955407:28,414,583...28,427,964
Ensembl chrNW_004955407:28,414,583...28,428,215
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955403:41,804,273...41,840,232
Ensembl chrNW_004955403:41,804,451...41,839,486
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955408:2,090,772...2,094,453
Ensembl chrNW_004955408:2,090,772...2,094,453
JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955416:272,127...273,068
Ensembl chrNW_004955416:272,127...273,068
JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955429:15,598,465...15,632,290
Ensembl chrNW_004955429:15,598,465...15,633,713
JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955421:15,358,387...15,455,534
Ensembl chrNW_004955421:15,358,221...15,457,097
JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955439:21,114,038...21,124,379 JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:14681208)
(PMID:15613540)
BHF-UCL PMID:14681208 PMID:15613540 NCBI chrNW_004955437:9,351,045...9,392,396
Ensembl chrNW_004955437:9,351,045...9,392,396
JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chrNW_004955408:2,060,288...2,064,998
Ensembl chrNW_004955408:2,060,829...2,065,416
JBrowse link
G Htt huntingtin ISO RGD PMID:20185826 RGD:10403027 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11402034) UniProt PMID:11402034 NCBI chrNW_004955495:7,839,339...7,874,432
Ensembl chrNW_004955495:7,839,339...7,874,432
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISO (PMID:17234882) UniProt PMID:17234882 NCBI chrNW_004955459:3,021,320...3,063,363
Ensembl chrNW_004955459:3,021,764...3,063,128
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:28418038) UniProt PMID:28418038 NCBI chrNW_004955504:4,339,044...4,360,176
Ensembl chrNW_004955504:4,338,855...4,361,520
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:19141475) UniProt PMID:19141475 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5508611|PMID:17234882) UniProt PMID:17234882 MGI:5508611 NCBI chrNW_004955481:4,462,270...4,497,364
Ensembl chrNW_004955481:4,462,270...4,497,364
JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004955473:11,029,860...11,143,493
Ensembl chrNW_004955473:11,029,714...11,144,880
JBrowse link
G Thoc5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chrNW_004955455:3,761,933...3,795,517
Ensembl chrNW_004955455:3,761,874...3,795,517
JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 acts_upstream_of_or_within ISO (MGI:2446384|PMID:12496368) MGI PMID:12496368 MGI:2446384 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678
JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197
JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor involved_in ISO (PMID:28418038) UniProt PMID:28418038 NCBI chrNW_004955506:1,278,230...1,282,064
Ensembl chrNW_004955506:1,278,471...1,281,772
JBrowse link
G Nxf1 nuclear RNA export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) MGI PMID:11579093 MGI:2154056 NCBI chrNW_004955599:439,773...450,834
Ensembl chrNW_004955599:439,775...454,300
JBrowse link
G Nxt1 nuclear transport factor 2 like export factor 1 acts_upstream_of_or_within ISO (MGI:2154056|PMID:11579093) MGI PMID:11579093 MGI:2154056 NCBI chrNW_004955415:30,366,993...30,369,688
Ensembl chrNW_004955415:30,366,993...30,369,688
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO (PMID:11952838) UniProt PMID:11952838 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) UniProt PMID:20691904 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein involved_in ISO (PMID:9864356) UniProt PMID:9864356 NCBI chrNW_004955406:24,742,525...24,805,989
Ensembl chrNW_004955406:24,742,525...24,805,989
JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (MGI:4831049|PMID:20833368) UniProt PMID:20833368 MGI:4831049 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:17004321) RGD
HGNC-UCL
PMID:14523087 PMID:17004321 RGD:9685480 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459
JBrowse link
G Sidt2 SID1 transmembrane family member 2 involved_in ISO (PMID:28277980)
(MGI:5908512|PMID:27046251), (MGI:5909194|PMID:28277980)
UniProt PMID:27046251 PMID:28277980 MGI:5908512 MGI:5909194 NCBI chrNW_004955412:18,505,453...18,521,667
Ensembl chrNW_004955412:18,505,453...18,522,082
JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (MGI:3822232|PMID:18809582) MGI PMID:18809582 MGI:3822232 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO (PMID:17308101) UniProt PMID:17308101 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992
JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrpl18 mitochondrial ribosomal protein L18 involved_in ISO (PMID:21685364) UniProt PMID:21685364 NCBI chrNW_004955439:21,059,736...21,067,100
Ensembl chrNW_004955439:21,058,187...21,067,100
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904) UniProt PMID:20691904 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Tst thiosulfate sulfurtransferase involved_in ISO (PMID:20663881) UniProt PMID:20663881 NCBI chrNW_004955413:23,528,468...23,534,890
Ensembl chrNW_004955413:23,528,417...23,534,979
JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tst thiosulfate sulfurtransferase involved_in ISO (PMID:21685364) UniProt PMID:21685364 NCBI chrNW_004955413:23,528,468...23,534,890
Ensembl chrNW_004955413:23,528,417...23,534,979
JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cct2 chaperonin containing TCP1 subunit 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955405:9,892,089...9,904,407
Ensembl chrNW_004955405:9,892,116...9,904,407
JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955424:22,088,949...22,108,514
Ensembl chrNW_004955424:22,088,949...22,108,514
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955594:846,997...857,255
Ensembl chrNW_004955594:847,815...856,510
JBrowse link
G Tcp1 t-complex 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955439:21,114,038...21,124,379 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25467444)
(PMID:19285445)
BHF-UCL
UniProt
PMID:19285445 PMID:25467444 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004955578:1,176,713...1,186,873
Ensembl chrNW_004955578:1,176,713...1,186,873
JBrowse link
G Nop58 NOP58 ribonucleoprotein involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004955457:12,481,467...12,511,678
Ensembl chrNW_004955457:12,479,965...12,511,678
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004955559:1,390,823...1,395,550
Ensembl chrNW_004955559:1,391,314...1,396,329
JBrowse link
G Prpf31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004955604:125,489...136,209
Ensembl chrNW_004955604:124,686...136,901
JBrowse link
G Znhit6 zinc finger HIT-type containing 6 involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chrNW_004955423:8,309,533...8,359,601
Ensembl chrNW_004955423:8,309,521...8,362,951
JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phax phosphorylated adaptor for RNA export acts_upstream_of_or_within ISO (MGI:1891494|PMID:10786834) MGI PMID:10786834 MGI:1891494 NCBI chrNW_004955521:4,425,382...4,442,668
Ensembl chrNW_004955521:4,425,426...4,443,082
JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ran RAN, member RAS oncogene family involved_in ISO (PMID:8636225) UniProt PMID:8636225 NCBI chrNW_004955482:1,222,944...1,223,891 JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wrap53 WD repeat containing antisense to TP53 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:17308035) CAFA PMID:17308035 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
G Xpot exportin for tRNA involved_in ISO (PMID:9660920) UniProt PMID:9660920 NCBI chrNW_004955458:11,162,612...11,206,515
Ensembl chrNW_004955458:11,162,782...11,208,849
JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11974
    localization 4833
      macromolecule localization 2238
        RNA localization 106
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 72
          intracellular mRNA localization + 11
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 5
          telomerase RNA localization + 19
paths to the root