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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA localization
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Accession:GO:0006403 term browser browse the term
Definition:A process in which RNA is transported to, or maintained in, a specific location.
Synonyms:exact_synonym: RNA localisation;   establishment and maintenance of RNA localization



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RNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 ISO RGD PMID:14614102 RGD:1299544 NCBI chr17:8,479,806...8,538,336
Ensembl chr17:8,468,240...8,519,552
JBrowse link
G PRPF6 pre-mRNA processing factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20797886) MGI
Ensembl
PMID:20797886 GO_REF:0000107 Ensembl chr20:61,899,076...61,948,088 JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:5051946|PMID:21729784) MGI PMID:21729784 MGI:5051946 NCBI chr14:80,859,491...80,903,651 JBrowse link
dsRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLOT1 flotillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,472,839...30,487,809
Ensembl chr 6:31,342,033...31,357,559
JBrowse link
G RFTN1 raftlin, lipid raft linker 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21266579) MGI
Ensembl
PMID:21266579 GO_REF:0000107 NCBI chr 3:16,241,255...16,441,402
Ensembl chr 3:16,578,092...16,778,464
JBrowse link
G RFTN2 raftlin family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4947923|PMID:21266579) MGI
Ensembl
PMID:21266579 GO_REF:0000107 MGI:4947923 NCBI chr2B:84,826,173...84,927,820
Ensembl chr2B:202,719,578...202,819,996
JBrowse link
establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041
JBrowse link
G ATR ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,482,606...139,612,274
Ensembl chr 3:147,075,185...147,196,261
JBrowse link
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASC3 CASC3 exon junction complex subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2683131|PMID:12843282) MGI
Ensembl
PMID:12843282 GO_REF:0000107 MGI:2683131 NCBI chr17:17,116,864...17,148,752
Ensembl chr17:17,339,060...17,370,076
JBrowse link
G FUBP3 far upstream element binding protein 3 ISO RGD PMID:23121659 RGD:12792285 NCBI chr 9:101,703,130...101,762,607
Ensembl chr 9:130,353,079...130,411,601
JBrowse link
G KIF5C kinesin family member 5C ISO RGD PMID:23121659 RGD:12792285 NCBI chr2B:10,836,356...10,987,683
Ensembl chr2B:153,235,329...153,387,221
JBrowse link
G STAU1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) MGI PMID:12843282 MGI:2683131 NCBI chr20:45,452,639...45,526,512
Ensembl chr20:46,517,772...46,578,024
JBrowse link
G ZNF385A zinc finger protein 385A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610775|PMID:16286649) MGI
Ensembl
PMID:16286649 GO_REF:0000107 MGI:3610775 NCBI chr12:34,353,975...34,376,172
Ensembl chr12:35,080,820...35,102,248
JBrowse link
miRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856
JBrowse link
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:27559612) UniProt PMID:27559612 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313
JBrowse link
mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,725,632...32,753,021
Ensembl chr17:38,003,362...38,030,715
JBrowse link
G ALYREF Aly/REF export factor involved_in ISO (PMID:17190602), (PMID:25662211) UniProt PMID:17190602 PMID:25662211 NCBI chr17:76,293,410...76,297,171 JBrowse link
G CHTOP chromatin target of PRMT1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:128,989,920...129,002,242
Ensembl chr 1:132,617,934...132,630,654
JBrowse link
G DDX25 DEAD-box helicase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,718,758...120,738,527
Ensembl chr11:124,632,841...124,667,585
JBrowse link
G DDX39A DExD-box helicase 39A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,972,137...13,982,680
Ensembl chr19:14,816,362...14,826,873
JBrowse link
G DDX39B DExD-box helicase 39B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,191,333...31,203,246
Ensembl chr 6:32,081,210...32,092,569
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478
JBrowse link
G FYTTD1 forty-two-three domain containing 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 3:195,166,837...195,201,886
Ensembl chr 3:205,049,785...205,084,249
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G LOC100978865 nuclear RNA export factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294
JBrowse link
G NCBP3 nuclear cap binding subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:3,852,643...3,896,031
Ensembl chr17:3,856,338...3,888,382
JBrowse link
G NUP107 nucleoporin 107 involved_in IEA UniProt
Ensembl
GO_REF:0000104 GO_REF:0000107 NCBI chr12:66,198,838...66,254,505
Ensembl chr12:68,981,409...69,035,642
JBrowse link
G NUP133 nucleoporin 133 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:204,985,690...205,053,072
Ensembl chr 1:210,017,649...210,084,746
JBrowse link
G NUP155 nucleoporin 155 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3839697|PMID:19070573) MGI
Ensembl
PMID:19070573 GO_REF:0000107 MGI:3839697 NCBI chr 5:73,000,597...73,080,417
Ensembl chr 5:78,285,001...78,360,601
JBrowse link
G NUP160 nucleoporin 160 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,732,678...47,805,906
Ensembl chr11:48,281,972...48,352,998
JBrowse link
G NUP214 nucleoporin 214 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:83941|PMID:8896451) MGI
Ensembl
PMID:8896451 GO_REF:0000107 MGI:83941 NCBI chr 9:102,246,575...102,355,291
Ensembl chr 9:130,893,110...131,001,305
JBrowse link
G NXF1 nuclear RNA export factor 1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943
JBrowse link
G NXF3 nuclear RNA export factor 3 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr  X:92,300,328...92,317,613
Ensembl chr  X:102,679,383...102,696,618
JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,292,400...23,296,427
Ensembl chr20:23,647,127...23,647,549
JBrowse link
G RAE1 ribonucleic acid export 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:53,691,491...53,719,456
Ensembl chr20:54,972,913...54,997,273
JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (MGI:6158828|PMID:19586903) UniProt PMID:19586903 MGI:6158828 NCBI chr 3:51,321,963...51,325,092 JBrowse link
G SARNP SAP domain containing ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,093,916...33,159,303
Ensembl chr12:33,818,823...33,879,358
JBrowse link
G SEM1 SEM1, 26S proteasome complex subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:88,647,366...88,668,476 JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,157,321...36,165,896
Ensembl chr 6:37,352,484...37,362,195
JBrowse link
G THOC1 THO complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,052,858...14,102,559
Ensembl chr18:17,692,797...17,742,570
JBrowse link
G THOC2 THO complex 2 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897
JBrowse link
G THOC3 THO complex 3 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 5:171,310,321...171,319,192
Ensembl chr 5:178,205,744...178,214,684
JBrowse link
G THOC5 THO complex subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,553,665...10,599,948
Ensembl chr22:28,357,644...28,404,346
JBrowse link
G THOC6 THO complex subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,965,875...1,969,595
Ensembl chr16:3,138,229...3,141,876
JBrowse link
G THOC7 THO complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:63,736,797...63,766,566
Ensembl chr 3:65,117,215...65,146,879
JBrowse link
G YTHDC1 YTH domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:55,701,639...55,738,377
Ensembl chr 4:62,095,948...62,132,609
JBrowse link
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1CF APOBEC1 complementation factor acts_upstream_of_or_within ISO (MGI:4943819|PMID:20541607) MGI PMID:20541607 MGI:4943819 NCBI chr10:47,451,293...47,538,062
Ensembl chr10:49,588,168...49,675,543
JBrowse link
G CKAP5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (MGI:5823498|PMID:28063167) MGI PMID:28063167 MGI:5823498 NCBI chr11:46,694,967...46,797,500
Ensembl chr11:47,252,752...47,329,274
JBrowse link
G ZNF385A zinc finger protein 385A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3610775|PMID:16286649) MGI
Ensembl
PMID:16286649 GO_REF:0000107 MGI:3610775 NCBI chr12:34,353,975...34,376,172
Ensembl chr12:35,080,820...35,102,248
JBrowse link
mRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARC activity regulated cytoskeleton associated protein involved_in ISO PMID:29328916 UniProt PMID:29328916 RGD:13514080 NCBI chr 8:139,320,366...139,323,802
Ensembl chr 8:142,367,995...142,369,185
JBrowse link
G BCLAF1 BCL2 associated transcription factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:134,023,195...134,054,507
Ensembl chr 6:138,115,451...138,137,108
JBrowse link
G CASC3 CASC3 exon junction complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr17:17,116,864...17,148,752
Ensembl chr17:17,339,060...17,370,076
JBrowse link
G CPEB1 cytoplasmic polyadenylation element binding protein 1 ISO RGD PMID:12629046 RGD:9685156 NCBI chr15:62,949,264...63,053,994
Ensembl chr15:80,443,096...80,526,948
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478
JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:3798322|PMID:18539120) UniProt PMID:18539120 MGI:3798322 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321
JBrowse link
G GLE1 GLE1 RNA export mediator involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:99,627,336...99,664,537
Ensembl chr 9:128,294,607...128,331,301
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:11886857 RGD:625404 NCBI chr2B:64,491,827...64,503,095
Ensembl chr2B:182,196,645...182,207,937
JBrowse link
G HTT huntingtin ISO RGD PMID:22355657 RGD:6902916 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:8,479,806...8,538,336
Ensembl chr17:8,468,240...8,519,552
JBrowse link
G IGF2BP2 insulin like growth factor 2 mRNA binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:182,667,557...182,848,528
Ensembl chr 3:191,142,063...191,320,221
JBrowse link
G IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:23,994,839...24,148,709
Ensembl chr 7:23,602,905...23,755,473
JBrowse link
G KIF5C kinesin family member 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:10,836,356...10,987,683
Ensembl chr2B:153,235,329...153,387,221
JBrowse link
G LOC100978865 nuclear RNA export factor 2 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G MAPT microtubule associated protein tau ISO RGD PMID:25847153 RGD:11061097 NCBI chr17:11,373,220...11,506,669
Ensembl chr17:11,458,159...11,523,129
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624
JBrowse link
G NDC1 NDC1 transmembrane nucleoporin involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:53,041,298...53,113,181
Ensembl chr 1:54,637,637...54,708,078
JBrowse link
G NUP107 nucleoporin 107 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:66,198,838...66,254,505
Ensembl chr12:68,981,409...69,035,642
JBrowse link
G NUP35 nucleoporin 35 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr2B:70,395,325...70,433,142
Ensembl chr2B:188,195,380...188,239,978
JBrowse link
G NUP50 nucleoporin 50 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:26,049,671...26,073,847
Ensembl chr22:44,232,743...44,254,913
JBrowse link
G NUP58 nucleoporin 58 involved_in IEA UniProt GO_REF:0000043 NCBI chr13:6,593,682...6,634,397
Ensembl chr13:24,948,081...24,992,854
JBrowse link
G NUP85 nucleoporin 85 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:69,152,452...69,182,688
Ensembl chr17:74,708,654...74,735,628
JBrowse link
G NUP88 nucleoporin 88 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:5,434,448...5,468,004
Ensembl chr17:5,426,379...5,460,375
JBrowse link
G NUP93 nucleoporin 93 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:37,007,481...37,122,785
Ensembl chr16:56,140,546...56,255,561
JBrowse link
G NUP98 nucleoporin 98 and 96 precursor involved_in IEA UniProt GO_REF:0000043 NCBI chr11:3,553,379...3,669,367
Ensembl chr11:3,661,568...3,767,443
JBrowse link
G NUTF2 nuclear transport factor 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr16:48,188,533...48,214,205
Ensembl chr16:67,575,842...67,601,053
JBrowse link
G NXF1 nuclear RNA export factor 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943
JBrowse link
G NXF3 nuclear RNA export factor 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:92,300,328...92,317,613
Ensembl chr  X:102,679,383...102,696,618
JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr20:23,292,400...23,296,427
Ensembl chr20:23,647,127...23,647,549
JBrowse link
G NXT2 nuclear transport factor 2 like export factor 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr  X:98,642,894...98,651,778
Ensembl chr  X:109,113,261...109,122,181
JBrowse link
G PEG10 paternally expressed 10 involved_in ISO (MGI:6828898|PMID:34413232) UniProt PMID:34413232 MGI:6828898 NCBI chr 7:86,606,249...86,619,580 JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:121,830,424...121,836,378
Ensembl chr 1:113,834,110...113,839,429
JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:10,237,101...10,257,694
Ensembl chr 3:10,588,644...10,608,754
JBrowse link
G SLBP stem-loop binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,830,247...1,849,890
Ensembl chr 4:1,744,616...1,763,796
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805
JBrowse link
negative regulation of establishment of RNA localization to telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 involved_in ISO (PMID:26586433) BHF-UCL PMID:26586433 NCBI chr 8:69,545,115...69,583,997 JBrowse link
negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUP153 nucleoporin 153 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,468,826...17,561,064
Ensembl chr 6:17,826,769...17,917,992
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478
JBrowse link
G GLE1 GLE1 RNA export mediator involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:99,627,336...99,664,537
Ensembl chr 9:128,294,607...128,331,301
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
G LOC100978865 nuclear RNA export factor 2 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G MCM3AP minichromosome maintenance complex component 3 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:32,577,539...32,629,060
Ensembl chr21:45,828,554...45,878,100
JBrowse link
G NXF1 nuclear RNA export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575625|PMID:15820316) MGI
Ensembl
PMID:15820316 GO_REF:0000107 MGI:3575625 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943
JBrowse link
G NXF3 nuclear RNA export factor 3 acts_upstream_of_or_within ISO (MGI:3575625|PMID:15820316) MGI PMID:15820316 MGI:3575625 NCBI chr  X:92,300,328...92,317,613
Ensembl chr  X:102,679,383...102,696,618
JBrowse link
G PCID2 PCI domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:94,319,699...94,350,763
Ensembl chr13:113,388,251...113,419,251
JBrowse link
G POLDIP3 DNA polymerase delta interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:23,478,786...23,510,074
Ensembl chr22:41,631,447...41,662,899
JBrowse link
G THOC2 THO complex 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897
JBrowse link
G ZC3H11A zinc finger CCCH-type containing 11A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:179,399,533...179,458,811
Ensembl chr 1:183,710,919...183,746,214
JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 involved_in ISO PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871
JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805
JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPSF6 cleavage and polyadenylation specific factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:66,750,301...66,785,104
Ensembl chr12:69,535,302...69,550,789
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833
JBrowse link
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,297,843...31,345,148
Ensembl chr 1:32,312,598...32,342,582
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:70,895,376...70,949,969
Ensembl chr14:90,247,035...90,300,705
JBrowse link
positive regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCT2 chaperonin containing TCP1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:67,113,221...67,128,159
Ensembl chr12:69,883,710...69,898,671
JBrowse link
G CCT3 chaperonin containing TCP1 subunit 3 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 1:131,652,058...131,679,802
Ensembl chr 1:135,481,427...135,508,983
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:61,950,477...61,970,783
Ensembl chr2A:63,084,090...63,105,216
JBrowse link
G CCT5 chaperonin containing TCP1 subunit 5 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 5:10,565,911...10,580,808
Ensembl chr 5:10,424,157...10,440,613
JBrowse link
G CCT6A chaperonin containing TCP1 subunit 6A involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 7:56,664,757...56,677,000
Ensembl chr 7:57,087,072...57,098,613
JBrowse link
G CCT7 chaperonin containing TCP1 subunit 7 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr2A:73,287,026...73,305,792
Ensembl chr2A:74,775,781...74,794,515
JBrowse link
G CCT8 chaperonin containing TCP1 subunit 8 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr21:15,489,698...15,507,292
Ensembl chr21:28,878,113...28,895,912
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475
JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 4:155,383,245...155,425,479
Ensembl chr 4:167,157,770...167,214,065
JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 5:173,308,560...173,313,046
Ensembl chr 5:180,566,008...180,570,502
JBrowse link
G NOP10 NOP10 ribonucleoprotein involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr15:12,850,708...12,852,171
Ensembl chr15:31,684,833...31,686,305
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 3:125,120,524...125,200,859
Ensembl chr 3:132,486,229...132,528,918
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407
JBrowse link
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:25467444) BHF-UCL PMID:25467444 NCBI chr 3:72,692,338...72,791,784
Ensembl chr 3:74,619,864...74,718,948
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,661,409...157,672,581
Ensembl chr 6:162,673,596...162,683,985
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPO5 exportin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,114,408...43,168,113
Ensembl chr 6:44,406,765...44,458,029
JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chr 5:173,364,301...173,370,974 JBrowse link
G HTT huntingtin ISO RGD PMID:20185826 RGD:10403027 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8L A-kinase anchoring protein 8 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,912,960...14,950,479
Ensembl chr19:15,897,969...15,936,486
JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:32,750,718...32,810,360
Ensembl chr2B:128,146,087...128,192,258
JBrowse link
G NSUN2 NOP2/Sun RNA methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,921,073...6,953,622
Ensembl chr 5:6,596,414...6,629,121
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,073,288...28,113,041
Ensembl chr17:28,578,199...28,617,292
JBrowse link
G THOC2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chr  X:112,797,077...112,929,918
Ensembl chr  X:122,979,547...123,110,897
JBrowse link
G THOC5 THO complex subunit 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) MGI PMID:24315442 MGI:5529717 NCBI chr22:10,553,665...10,599,948
Ensembl chr22:28,357,644...28,404,346
JBrowse link
G TPR translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) UniProt PMID:22253824 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2446384|PMID:12496368) MGI
Ensembl
PMID:12496368 GO_REF:0000107 MGI:2446384 NCBI chr 1:31,297,843...31,345,148
Ensembl chr 1:32,312,598...32,342,582
JBrowse link
regulation of telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475
JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241
JBrowse link
G PARN poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:13,363,879...13,556,054
Ensembl chr16:14,787,881...14,977,786
JBrowse link
RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor involved_in ISO (PMID:28418038) UniProt PMID:28418038 NCBI chr17:76,293,410...76,297,171 JBrowse link
G LOC100978865 nuclear RNA export factor 2 acts_upstream_of_or_within ISO (MGI:3587445|PMID:16027110) MGI PMID:16027110 MGI:3587445 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G NXF1 nuclear RNA export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154056|PMID:11579093) MGI
Ensembl
PMID:11579093 GO_REF:0000107 MGI:2154056 NCBI chr11:58,147,548...58,161,393
Ensembl chr11:61,501,546...61,514,943
JBrowse link
G NXT1 nuclear transport factor 2 like export factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154056|PMID:11579093) MGI
Ensembl
PMID:11579093 GO_REF:0000107 MGI:2154056 NCBI chr20:23,292,400...23,296,427
Ensembl chr20:23,647,127...23,647,549
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
RNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326
JBrowse link
RNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KPNB1 karyopherin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:9,852,424...9,887,111
Ensembl chr17:10,035,732...10,068,913
JBrowse link
G SNUPN snurportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:54,508,586...54,536,301
Ensembl chr15:74,102,753...74,126,511
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
RNA localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
RNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
IEA
RGD
Ensembl
PMID:14523087 GO_REF:0000107 RGD:9685480 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G LOC100978865 nuclear RNA export factor 2 involved_in ISO (PMID:11566096) UniProt PMID:11566096 NCBI chr  X:91,029,232...91,040,710 JBrowse link
G SIDT2 SID1 transmembrane family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:112,012,734...112,031,403
Ensembl chr11:115,946,725...115,963,408
JBrowse link
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313
JBrowse link
rRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 acts_upstream_of_or_within ISO (MGI:3822232|PMID:18809582) MGI PMID:18809582 MGI:3822232 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G TSC1 TSC complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:104,007,708...104,060,938
Ensembl chr 9:132,638,003...132,675,759
JBrowse link
rRNA import into mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRPL18 mitochondrial ribosomal protein L18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,673,328...157,681,324
Ensembl chr 6:162,684,958...162,693,002
JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326
JBrowse link
G TST thiosulfate sulfurtransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,925,215...17,933,919
Ensembl chr22:35,761,073...35,768,992
JBrowse link
rRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TST thiosulfate sulfurtransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,925,215...17,933,919
Ensembl chr22:35,761,073...35,768,992
JBrowse link
scaRNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCT2 chaperonin containing TCP1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:67,113,221...67,128,159
Ensembl chr12:69,883,710...69,898,671
JBrowse link
G CCT4 chaperonin containing TCP1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:61,950,477...61,970,783
Ensembl chr2A:63,084,090...63,105,216
JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475
JBrowse link
G TCP1 t-complex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,661,409...157,672,581
Ensembl chr 6:162,673,596...162,683,985
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
snoRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBL fibrillarin involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,866,329...36,878,293
Ensembl chr19:45,413,978...45,425,930
JBrowse link
G NOP58 NOP58 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:89,520,961...89,558,794
Ensembl chr2B:207,674,654...207,707,763
JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,459,855...46,465,882
Ensembl chr19:55,381,803...55,387,664
JBrowse link
G PRPF31 pre-mRNA processing factor 31 NOT|involved_in ISO (PMID:17636026) UniProt PMID:17636026 NCBI chr19:51,048,133...51,064,394
Ensembl chr19:59,891,070...59,907,159
JBrowse link
G ZNHIT6 zinc finger HIT-type containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:118,213,412...118,269,103
Ensembl chr 1:87,068,740...87,124,138
JBrowse link
snRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624
JBrowse link
G NCBP3 nuclear cap binding subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:3,852,643...3,896,031
Ensembl chr17:3,856,338...3,888,382
JBrowse link
G PHAX phosphorylated adaptor for RNA export acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1891494|PMID:10786834) MGI
InterPro
Ensembl
PMID:10786834 GO_REF:0000002 GO_REF:0000107 MGI:1891494 NCBI chr 5:122,005,976...122,032,326
Ensembl chr 5:127,776,529...127,803,619
JBrowse link
snRNA import into nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAN RAN, member RAS oncogene family involved_in ISO (PMID:8636225) UniProt PMID:8636225 NCBI chr12:128,497,407...128,503,049
Ensembl chr12:132,694,498...132,699,668
JBrowse link
G SNUPN snurportin 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr15:54,508,586...54,536,301
Ensembl chr15:74,102,753...74,126,511
JBrowse link
telomerase RNA localization to Cajal body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
tRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSB small RNA binding exonuclease protection factor La involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:57,071,158...57,084,428
Ensembl chr2B:174,536,382...174,549,604
JBrowse link
G XPOT exportin for tRNA involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr12:24,469,893...24,516,694
Ensembl chr12:24,969,881...25,016,517
JBrowse link
tRNA re-export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPOT exportin for tRNA involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr12:24,469,893...24,516,694
Ensembl chr12:24,969,881...25,016,517
JBrowse link
tRNA transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G YBX1 Y-box binding protein 1 involved_in ISO (PMID:29073095) UniProt PMID:29073095 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15421
    localization 4854
      macromolecule localization 2649
        RNA localization 133
          RNA localization to chromatin 1
          RNA localization to nucleus + 19
          establishment of RNA localization + 99
          intracellular mRNA localization + 12
          maintenance of RNA location + 0
          mitochondrial RNA localization + 0
          pole plasm RNA localization + 0
          snoRNA localization 5
          telomerase RNA localization + 19
paths to the root