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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA catabolic process
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Accession:GO:0006402 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
Synonyms:exact_synonym: mRNA breakdown;   mRNA catabolism;   mRNA degradation
 related_synonym: mRNA decay


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mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:18771919) UniProtKB PMID:18771919 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:18771919) UniProtKB PMID:18771919 NCBI chrNW_004955452:13,882,416...13,922,590
Ensembl chrNW_004955452:13,882,416...13,922,590
JBrowse link
G Dcp2 decapping mRNA 2 ISO (PMID:21070968), (PMID:28002401)
(MGI:MGI:4849882|PMID:21070968)
UniProt
UniProtKB
PMID:21070968, PMID:28002401 MGI:MGI:4849882 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dxo decapping exoribonuclease ISO (MGI:MGI:5488528|PMID:23523372)
(MGI:MGI:6368104|PMID:28283058)
(PMID:29601584)
UniProtKB
UniProt
PMID:23523372, PMID:28283058, PMID:29601584 MGI:MGI:5488528, MGI:MGI:6368104 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (MGI:MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:MGI:5439239 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955617:42,829...47,999 JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955428:1,931,684...1,944,445
Ensembl chrNW_004955428:1,930,937...1,946,246
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:5927282|PMID:28965759) UniProtKB PMID:28965759 MGI:MGI:5927282 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730
JBrowse link
G Mettl16 methyltransferase like 16 ISO (MGI:MGI:6114846|PMID:29262316) UniProtKB PMID:29262316 MGI:MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
G Mettl3 methyltransferase like 3 ISO (MGI:MGI:5927282|PMID:28965759), (MGI:MGI:6094929|PMID:28792938), (MGI:MGI:6095345|PMID:28637692) UniProtKB PMID:28637692, PMID:28792938, PMID:28965759 MGI:MGI:5927282, MGI:MGI:6094929, MGI:MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 ISO (MGI:MGI:4431145|PMID:20133598) UniProtKB PMID:20133598 MGI:MGI:4431145 NCBI chrNW_004955574:333,007...333,529
Ensembl chrNW_004955574:333,116...333,529
JBrowse link
G Nudt12 nudix hydrolase 12 ISO (MGI:MGI:6368680|PMID:31101919) UniProt PMID:31101919 MGI:MGI:6368680 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:21070968), (PMID:21337011)
(MGI:MGI:4849882|PMID:21070968)
UniProtKB PMID:21070968, PMID:21337011 MGI:MGI:4849882 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:12721301), (PMID:16055741) UniProtKB PMID:12721301, PMID:16055741 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Rida reactive intermediate imine deaminase A homolog ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004955417:13,810,596...13,822,982
Ensembl chrNW_004955417:13,810,596...13,822,982
JBrowse link
G Slfn14 schlafen family member 14 ISO (PMID:25996083)
(MGI:MGI:5705207|PMID:25996083)
UniProtKB PMID:25996083 MGI:MGI:5705207 NCBI chrNW_004955481:10,037,941...10,046,549
Ensembl chrNW_004955481:10,037,941...10,046,549
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(MGI:MGI:6316439|PMID:29855337), (MGI:MGI:6316688|PMID:30065315), (MGI:MGI:6317061|PMID:30150673)
UniProt PMID:27558897, PMID:29855337, PMID:30065315, PMID:30150673, PMID:30559377, PMID:30930054 MGI:MGI:6316439, MGI:MGI:6316688, MGI:MGI:6317061 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D ISO (MGI:MGI:5567042|PMID:24415781) MGI PMID:24415781 MGI:MGI:5567042 NCBI chrNW_004955439:11,761,099...11,787,508
Ensembl chrNW_004955439:11,768,812...11,785,230
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (PMID:10330172), (PMID:10751406), (PMID:11782475), (PMID:20221403) UniProtKB PMID:10330172, PMID:10751406, PMID:11782475, PMID:20221403 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (MGI:MGI:5320815|PMID:22367205) UniProtKB PMID:22367205 MGI:MGI:5320815 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:MGI:49288|PMID:1370712) MGI PMID:1370712 MGI:MGI:49288 NCBI chrNW_004955540:1,805,648...1,890,409
Ensembl chrNW_004955540:1,805,666...1,890,409
JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (PMID:21336257) UniProtKB PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:26489465) UniProt PMID:26489465 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO (PMID:28297718) CACAO PMID:28297718 NCBI chrNW_004955418:30,795...33,394
Ensembl chrNW_004955418:30,893...32,936
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (PMID:16126846)
(PMID:28275056)
UniProtKB
CACAO
PMID:16126846, PMID:28275056 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206
JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 ISO (MGI:MGI:6105829|PMID:27616329)
(PMID:29180010)
UniProt PMID:27616329, PMID:29180010 MGI:MGI:6105829 NCBI chrNW_004955486:9,736,801...9,744,659
Ensembl chrNW_004955486:9,737,365...9,744,111
JBrowse link
G Qki QKI, KH domain containing RNA binding ISO (MGI:MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:MGI:5316962 NCBI chrNW_004955439:17,925,205...18,079,727 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24375645) UniProtKB PMID:24375645 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671) UniProtKB PMID:26000482, PMID:26255671 MGI:MGI:5706859, MGI:MGI:5751631 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:28335005) CACAO PMID:28335005 NCBI chrNW_004955486:2,656,121...2,674,808
Ensembl chrNW_004955486:2,656,121...2,674,807
JBrowse link
G Trim71 tripartite motif containing 71 ISO (PMID:23125361) CACAO PMID:23125361 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:26255671)
(PMID:24726324)
UniProtKB
UniProt
PMID:24726324, PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (MGI:MGI:3842851|PMID:19322177), (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5706909|PMID:23185455), (MGI:MGI:5707103|PMID:26134560), (MGI:MGI:5751631|PMID:26255671)
(PMID:19909337)
UniProtKB PMID:19322177, PMID:19909337, PMID:23185455, PMID:26000482, PMID:26134560, PMID:26255671 MGI:MGI:3842851, MGI:MGI:5706859, MGI:MGI:5706909, MGI:MGI:5707103, MGI:MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D ISO (MGI:MGI:5707103|PMID:26134560) UniProtKB PMID:26134560 MGI:MGI:5707103 NCBI chrNW_004955439:11,761,099...11,787,508
Ensembl chrNW_004955439:11,768,812...11,785,230
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:5784976|PMID:22701344), (MGI:MGI:5788345|PMID:27193233)
(MGI:MGI:5795824|PMID:17288565)
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
(PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
UniProtKB PMID:9703499, PMID:11719186, PMID:14679154, PMID:15187101, PMID:15634918, PMID:15687258, PMID:15766526, PMID:17288565, PMID:20221403, PMID:22701344, PMID:27193233 MGI:MGI:5784976, MGI:MGI:5788345, MGI:MGI:5795824 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO (PMID:12198173), (PMID:25014217), (PMID:25106868)
(PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:26542173)
(MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5784967|PMID:24733888), (MGI:MGI:5784976|PMID:22701344)
(MGI:MGI:5779430|PMID:27102483), (MGI:MGI:5784968|PMID:24700863)
UniProtKB PMID:12198173, PMID:15467755, PMID:15538381, PMID:15687258, PMID:18326031, PMID:19179481, PMID:20622884, PMID:22701344, PMID:24700863, PMID:24733888, PMID:25014217, PMID:25106868, PMID:26542173, PMID:27102483 MGI:MGI:4818820, MGI:MGI:5779430, MGI:MGI:5784967, MGI:MGI:5784968, MGI:MGI:5784976 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5784976|PMID:22701344)
(PMID:25106868)
UniProtKB PMID:20622884, PMID:22701344, PMID:25106868 MGI:MGI:4818820, MGI:MGI:5784976 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 ISO (PMID:22547059) HGNC PMID:22547059 NCBI chrNW_004955406:4,589,849...4,606,380
Ensembl chrNW_004955406:4,589,849...4,606,380
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO (MGI:MGI:6105829|PMID:27616329)
(PMID:14517288), (PMID:26489465), (PMID:29180010)
(PMID:19029303)
UniProt
UniProtKB
PMID:14517288, PMID:19029303, PMID:26489465, PMID:27616329, PMID:29180010 MGI:MGI:6105829 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO (PMID:12034726) UniProt PMID:12034726 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO (MGI:MGI:5306322|PMID:12456657) UniProtKB PMID:12456657 MGI:MGI:5306322 NCBI chrNW_004955408:32,718,736...32,719,409 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C ISO (PMID:16010978) UniProtKB PMID:16010978 NCBI chrNW_004955550:1,949,975...2,002,297 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) UniProtKB PMID:14517288, PMID:15014438, PMID:20932473 NCBI chrNW_004955406:42,231,858...42,276,477
Ensembl chrNW_004955406:42,231,858...42,276,477
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492
JBrowse link
G Rbm10 RNA binding motif protein 10 ISO (MGI:MGI:4367529|PMID:19508861) MGI PMID:19508861 MGI:MGI:4367529 NCBI chrNW_004955516:904,852...934,313
Ensembl chrNW_004955516:904,062...934,313
JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:17050675) UniProtKB PMID:17050675 NCBI chrNW_004955445:2,036,314...2,050,882
Ensembl chrNW_004955445:2,036,124...2,052,139
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:17481916) BHF-UCL PMID:17481916 NCBI chrNW_004955486:2,656,121...2,674,808
Ensembl chrNW_004955486:2,656,121...2,674,807
JBrowse link
G Tirap TIR domain containing adaptor protein ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004955412:27,303,548...27,315,031
Ensembl chrNW_004955412:27,312,489...27,315,031
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (PMID:15014438) UniProtKB PMID:15014438 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:19029303) UniProtKB PMID:19029303 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (PMID:19029303) UniProtKB PMID:19029303 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO (PMID:19029303) UniProtKB PMID:19029303 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein ISO (PMID:19029303) UniProtKB PMID:19029303 NCBI chrNW_004955411:13,068,078...13,096,936
Ensembl chrNW_004955411:13,066,789...13,096,938
JBrowse link
G Ybx1 Y-box binding protein 1 ISO (PMID:19029303) UniProtKB PMID:19029303 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Noct nocturnin ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955497:7,500,478...7,646,541
Ensembl chrNW_004955497:7,500,748...7,647,255
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor ISO (PMID:20584987), (PMID:20852261) UniProtKB PMID:20584987, PMID:20852261 NCBI chrNW_004955511:4,090,841...4,119,077
Ensembl chrNW_004955511:4,092,257...4,119,077
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 ISO (PMID:20065043) UniProtKB PMID:20065043 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (PMID:20065043), (PMID:21336257) UniProtKB PMID:20065043, PMID:21336257 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 ISO (PMID:20065043) UniProtKB PMID:20065043 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Exosc3 exosome component 3 ISO (PMID:11782436) UniProtKB PMID:11782436 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395
JBrowse link
G Exosc5 exosome component 5 ISO (PMID:11782436) UniProtKB PMID:11782436 NCBI chrNW_004955555:328,130...334,106
Ensembl chrNW_004955555:326,698...334,106
JBrowse link
G Exosc9 exosome component 9 ISO (PMID:11782436) UniProtKB PMID:11782436 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO (PMID:16086026) UniProtKB PMID:16086026 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Dcp2 decapping mRNA 2 ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Eri1 exoribonuclease 1 NOT ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955463:5,074,921...5,104,341
Ensembl chrNW_004955463:5,075,105...5,102,892
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955463:13,775,639...13,788,784
Ensembl chrNW_004955463:13,773,869...13,788,784
JBrowse link
G Mtpap mitochondrial poly(A) polymerase ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955429:21,768,011...21,792,481
Ensembl chrNW_004955429:21,767,547...21,794,885
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955599:596,565...606,498 JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066
JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:16086026) UniProtKB PMID:16086026 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (PMID:18172165) UniProtKB PMID:18172165 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 ISO (PMID:21245038), (PMID:21666256) UniProtKB PMID:21245038, PMID:21666256 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:20691904)
(MGI:MGI:4881376|PMID:20691904)
UniProtKB PMID:20691904 MGI:MGI:4881376 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Supv3l1 Suv3 like RNA helicase ISO (PMID:19864255) UniProtKB PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647
JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like ISO (MGI:MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:MGI:3828348 NCBI chrNW_004955433:2,206,462...2,290,773
Ensembl chrNW_004955433:2,213,444...2,316,049
JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO (PMID:28002401), (PMID:30197295) UniProt PMID:28002401, PMID:30197295 NCBI chrNW_004955433:11,424,069...11,834,955
Ensembl chrNW_004955433:11,424,176...11,813,771
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 ISO (PMID:27157137) ParkinsonsUK-UCL PMID:27157137 NCBI chrNW_004955453:3,201,593...3,301,541
Ensembl chrNW_004955453:3,203,358...3,301,547
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004955452:3,318,536...3,354,725
Ensembl chrNW_004955452:3,315,133...3,355,508
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5927282|PMID:28965759) UniProtKB PMID:24394384, PMID:28965759 MGI:MGI:5559905, MGI:MGI:5927282 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730
JBrowse link
G Mettl16 methyltransferase like 16 ISO (MGI:MGI:6114846|PMID:29262316) UniProtKB PMID:29262316 MGI:MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
G Mettl3 methyltransferase like 3 ISO (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5621227|PMID:25569111), (MGI:MGI:5621254|PMID:25456834), (MGI:MGI:5927282|PMID:28965759), (MGI:MGI:6094929|PMID:28792938), (MGI:MGI:6095345|PMID:28637692) UniProtKB PMID:24394384, PMID:25456834, PMID:25569111, PMID:28637692, PMID:28792938, PMID:28965759 MGI:MGI:5559905, MGI:MGI:5621227, MGI:MGI:5621254, MGI:MGI:5927282, MGI:MGI:6094929, MGI:MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715
JBrowse link
G Pum1 pumilio RNA binding family member 1 ISO (MGI:MGI:5640888|PMID:25768905) UniProtKB PMID:25768905 MGI:MGI:5640888 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) UniProtKB PMID:29104163 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rida reactive intermediate imine deaminase A homolog ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004955417:13,810,596...13,822,982
Ensembl chrNW_004955417:13,810,596...13,822,982
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 ISO (MGI:MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:MGI:6271078 NCBI chrNW_004955402:9,752,101...9,864,317
Ensembl chrNW_004955402:9,750,730...9,864,317
JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 ISO (MGI:MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:MGI:6271078 NCBI chrNW_004955487:5,856,190...5,972,408
Ensembl chrNW_004955487:5,859,204...5,972,401
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 ISO (PMID:28106072)
(MGI:MGI:6316439|PMID:29855337), (MGI:MGI:6316688|PMID:30065315), (MGI:MGI:6317061|PMID:30150673)
(PMID:27558897), (PMID:30559377), (PMID:30930054)
UniProtKB
UniProt
PMID:27558897, PMID:28106072, PMID:29855337, PMID:30065315, PMID:30150673, PMID:30559377, PMID:30930054 MGI:MGI:6316439, MGI:MGI:6316688, MGI:MGI:6317061 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein 3 ISO (PMID:28106072) UniProtKB PMID:28106072 NCBI chrNW_004955444:15,758,596...15,789,979
Ensembl chrNW_004955444:15,758,596...15,789,979
JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO (MGI:MGI:3057047|PMID:15480992) MGI PMID:15480992 MGI:MGI:3057047 NCBI chrNW_004955413:6,471,933...6,480,475
Ensembl chrNW_004955413:6,471,953...6,480,469
JBrowse link
G Axin2 axin 2 ISO (PMID:17072303) BHF-UCL PMID:17072303 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Cirbp cold inducible RNA binding protein ISO (PMID:11574538) UniProtKB PMID:11574538 NCBI chrNW_004955495:6,634,389...6,640,800
Ensembl chrNW_004955495:6,634,394...6,640,800
JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO (MGI:MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:MGI:5439239 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G E2f1 E2F transcription factor 1 ISO (PMID:15766563) BHF-UCL PMID:15766563 NCBI chrNW_004955422:27,638,625...27,643,261
Ensembl chrNW_004955422:27,633,827...27,642,241
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:24335285), (PMID:32354837) UniProt PMID:24335285, PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO (PMID:19029303)
(PMID:21613615), (PMID:31358969)
(MGI:MGI:3037407|PMID:14976220), (MGI:MGI:5287957|PMID:21613615), (MGI:MGI:5559905|PMID:24394384)
(MGI:MGI:5922838|PMID:27609837)
UniProtKB
MGI
CACAO
PMID:14976220, PMID:19029303, PMID:21613615, PMID:24394384, PMID:27609837, PMID:31358969 MGI:MGI:3037407, MGI:MGI:5287957, MGI:MGI:5559905, MGI:MGI:5922838 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283
JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO (PMID:12358785) BHF-UCL PMID:12358785 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:15192077 RGD:1357938 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (PMID:17174306) UniProtKB PMID:17174306 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:25940091), (PMID:28673543) UniProt PMID:25940091, PMID:28673543 NCBI chrNW_004955408:9,002,443...9,080,938
Ensembl chrNW_004955408:9,002,458...9,080,938
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (MGI:MGI:2158083|PMID:11741878) MGI PMID:11741878 MGI:MGI:2158083 NCBI chrNW_004955406:42,231,858...42,276,477
Ensembl chrNW_004955406:42,231,858...42,276,477
JBrowse link
G Meioc meiosis specific with coiled-coil domain ISO (MGI:MGI:5770021|PMID:26742488) UniProtKB PMID:26742488 MGI:MGI:5770021 NCBI chrNW_004955451:17,534,644...17,547,095
Ensembl chrNW_004955451:17,534,659...17,545,584
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:21073857 RGD:10040969 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Noct nocturnin ISO (MGI:MGI:5308514|PMID:22073225) UniProtKB PMID:22073225 MGI:MGI:5308514 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:16855020 RGD:10045995 NCBI chrNW_004955439:17,925,205...18,079,727 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) UniProtKB PMID:29104163 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:MGI:5644240|PMID:25397698) MGI PMID:25397698 MGI:MGI:5644240 NCBI chrNW_004955471:12,096,400...12,167,536 JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO (MGI:MGI:85148|PMID:9009318) MGI PMID:9009318 MGI:MGI:85148 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608
JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO (PMID:27378374) MGI PMID:27378374 NCBI chrNW_004955481:10,242,839...10,274,961
Ensembl chrNW_004955481:10,252,393...10,274,860
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C ISO (PMID:28931820)
(MGI:MGI:5926094|PMID:28931820)
UniProtKB PMID:28931820 MGI:MGI:5926094 NCBI chrNW_004955435:20,790,410...20,811,730
Ensembl chrNW_004955435:20,792,773...20,811,723
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO (PMID:18794151) UniProtKB PMID:18794151 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886
JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:12881220 RGD:1580563 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Ybx1 Y-box binding protein 1 ISO (PMID:31358969) UniProt PMID:31358969 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
G Ybx2 Y-box binding protein 2 ISO (MGI:MGI:3696301|PMID:17035640) MGI PMID:17035640 MGI:MGI:3696301 NCBI chrNW_004955467:9,624,506...9,629,904
Ensembl chrNW_004955467:9,624,019...9,629,904
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 ISO (PMID:28525753) UniProt PMID:28525753 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Pkp1 plakophilin 1 ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955406:37,420,019...37,465,588
Ensembl chrNW_004955406:37,419,856...37,465,655
JBrowse link
G Pkp3 plakophilin 3 ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955476:11,611,240...11,619,210
Ensembl chrNW_004955476:11,611,240...11,619,780
JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx34 DExH-box helicase 34 ISO (PMID:23828042) UniProtKB PMID:23828042 NCBI chrNW_004955574:1,248,058...1,267,399
Ensembl chrNW_004955574:1,248,021...1,267,399
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex ISO (PMID:23828042) UniProtKB PMID:23828042 NCBI chrNW_004955487:8,894,403...9,073,535
Ensembl chrNW_004955487:8,894,187...9,073,663
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO (PMID:18447585) UniProtKB PMID:18447585 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Secisbp2 SECIS binding protein 2 ISO (MGI:MGI:5582859|PMID:24274065) MGI PMID:24274065 MGI:MGI:5582859 NCBI chrNW_004955515:2,697,370...2,729,425
Ensembl chrNW_004955515:2,698,075...2,730,074
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
G Tob1 transducer of ERBB2, 1 ISO (PMID:18377426) UniProtKB PMID:18377426 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La ISO (PMID:9154801) CAFA PMID:9154801 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease ISO (MGI:MGI:5488528|PMID:23523372) UniProtKB PMID:23523372 MGI:MGI:5488528 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Exosc9 exosome component 9 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:16934922) UniProtKB PMID:16934922 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 ISO (PMID:20699273) UniProtKB PMID:20699273 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 ISO (PMID:18771919) UniProtKB PMID:18771919 NCBI chrNW_004955452:13,935,028...13,967,281
Ensembl chrNW_004955452:13,934,346...13,968,624
JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (PMID:23788676) UniProtKB PMID:23788676 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358
JBrowse link
G Dhx34 DExH-box helicase 34 ISO (PMID:23828042) UniProtKB PMID:23828042 NCBI chrNW_004955574:1,248,058...1,267,399
Ensembl chrNW_004955574:1,248,021...1,267,399
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Exosc9 exosome component 9 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex ISO (PMID:23828042) UniProtKB PMID:23828042 NCBI chrNW_004955487:8,894,403...9,073,535
Ensembl chrNW_004955487:8,894,187...9,073,663
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (PMID:25026078)
(MGI:MGI:4819285|PMID:20639877)
UniProtKB
BHF-UCL
PMID:20639877, PMID:25026078 MGI:MGI:4819285 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO (PMID:20123736) UniProtKB PMID:20123736 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:23828042) UniProtKB PMID:23828042 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (PMID:17545563) UniProtKB PMID:17545563 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6l CCR4-NOT transcription complex subunit 6 like ISO (MGI:MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:MGI:3828348 NCBI chrNW_004955433:2,206,462...2,290,773
Ensembl chrNW_004955433:2,213,444...2,316,049
JBrowse link
G Pde12 phosphodiesterase 12 ISO (PMID:21245038) UniProtKB PMID:21245038 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671) UniProtKB PMID:26000482, PMID:26255671 MGI:MGI:5706859, MGI:MGI:5751631 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (PMID:23644599)
(MGI:MGI:3589099|PMID:15814898)
UniProtKB
MGI
PMID:15814898, PMID:23644599 MGI:MGI:3589099 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO (MGI:MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:MGI:3589099 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (MGI:MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:MGI:3589099 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein ISO (PMID:11279239) UniProtKB PMID:11279239 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:26255671) UniProtKB PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (MGI:MGI:5751631|PMID:26255671) UniProtKB PMID:26255671 MGI:MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 ISO (PMID:23756462) UniProtKB PMID:23756462 NCBI chrNW_004955453:3,558,744...3,851,222
Ensembl chrNW_004955453:3,559,067...3,830,064
JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 ISO (PMID:15314026) UniProtKB PMID:15314026 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Csde1 cold shock domain containing E1 ISO (PMID:15314026) UniProtKB PMID:15314026 NCBI chrNW_004955435:18,009,228...18,050,329
Ensembl chrNW_004955435:18,008,352...18,050,329
JBrowse link
G Gtpbp2 GTP binding protein 2 ISO (MGI:MGI:5574482|PMID:25061210) MGI PMID:25061210 MGI:MGI:5574482 NCBI chrNW_004955437:9,414,128...9,425,671
Ensembl chrNW_004955437:9,412,934...9,424,365
JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctif cap binding complex dependent translation initiation factor ISO (PMID:19648179) UniProtKB PMID:19648179 NCBI chrNW_004955402:33,706,824...33,986,476
Ensembl chrNW_004955402:33,706,788...33,987,583
JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E ISO (PMID:17468741) UniProtKB PMID:17468741 NCBI chrNW_004955417:30,823,555...30,858,975
Ensembl chrNW_004955417:30,822,027...30,858,975
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO (PMID:16209946) UniProtKB PMID:16209946 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873
JBrowse link
G Magoh mago homolog, exon junction complex subunit ISO (PMID:16209946)
(PMID:23917022)
UniProtKB
HGNC
PMID:16209946, PMID:23917022 NCBI chrNW_004955464:5,919,289...5,929,152 JBrowse link
G Magohb mago homolog B, exon junction complex subunit ISO (PMID:23917022) HGNC PMID:23917022 NCBI chrNW_004955413:7,195,078...7,201,659
Ensembl chrNW_004955413:7,194,798...7,201,969
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO (PMID:18369367)
(PMID:11551508), (PMID:17873884)
UniProtKB PMID:11551508, PMID:17873884, PMID:18369367 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO (PMID:11551508)
(PMID:17873884), (PMID:18369367)
UniProtKB PMID:11551508, PMID:17873884, PMID:18369367 NCBI chrNW_004955420:12,979,368...12,992,500
Ensembl chrNW_004955420:12,979,368...12,992,500
JBrowse link
G Pnrc2 proline rich nuclear receptor coactivator 2 ISO (PMID:19150429) UniProtKB PMID:19150429 NCBI chrNW_004955452:3,826,337...3,829,896 JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor ISO (PMID:19410547) UniProtKB PMID:19410547 NCBI chrNW_004955458:3,499,217...3,515,108
Ensembl chrNW_004955458:3,498,822...3,514,839
JBrowse link
G Rbm8a RNA binding motif protein 8A ISO (PMID:16209946) UniProtKB PMID:16209946 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO (PMID:16209946)
(PMID:11546874)
UniProtKB PMID:11546874, PMID:16209946 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358
JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase ISO (PMID:11544179) UniProtKB PMID:11544179 NCBI chrNW_004955442:2,553,135...2,651,772
Ensembl chrNW_004955442:2,553,143...2,651,772
JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor ISO (PMID:18974281), (PMID:19060897), (PMID:20930030) UniProtKB PMID:18974281, PMID:19060897, PMID:20930030 NCBI chrNW_004955481:940,041...1,177,998
Ensembl chrNW_004955481:940,041...1,177,998
JBrowse link
G Smg8 SMG8 nonsense mediated mRNA decay factor ISO (PMID:19417104) UniProtKB PMID:19417104 NCBI chrNW_004955451:3,803,325...3,809,055 JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor ISO (PMID:19417104) UniProtKB PMID:19417104 NCBI chrNW_004955555:1,463,031...1,481,411
Ensembl chrNW_004955555:1,459,451...1,481,411
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:18369367)
(PMID:17468741)
UniProtKB PMID:17468741, PMID:18369367 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay ISO (PMID:18369367) UniProtKB PMID:18369367 NCBI chrNW_004955421:27,867,663...27,962,809
Ensembl chrNW_004955421:27,861,958...27,952,835
JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay NOT ISO (PMID:16601204) UniProtKB PMID:16601204 NCBI chrNW_004955404:25,556...36,730 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay ISO (PMID:16601204)
(PMID:18369367)
UniProtKB PMID:16601204, PMID:18369367 NCBI chrNW_004955534:176,553...193,033
Ensembl chrNW_004955534:176,522...193,319
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 ISO (PMID:20595389) UniProtKB PMID:20595389 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Mlh1 mutL homolog 1 ISO (MGI:MGI:1934053|PMID:11337385) MGI PMID:11337385 MGI:MGI:1934053 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Parn poly(A)-specific ribonuclease ISO (MGI:MGI:3785219|PMID:18337750) MGI PMID:18337750 MGI:MGI:3785219 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 ISO (MGI:MGI:5825409|PMID:27515512)
(PMID:27515512)
UniProtKB PMID:27515512 MGI:MGI:5825409 NCBI chrNW_004955439:21,039,638...21,058,558
Ensembl chrNW_004955439:21,035,825...21,058,549
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:3589099|PMID:15814898)
(PMID:23644599)
MGI
BHF-UCL
PMID:15814898, PMID:23644599 MGI:MGI:3589099 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut4 terminal uridylyl transferase 4 ISO (MGI:MGI:6162305|PMID:28792939) UniProtKB PMID:28792939 MGI:MGI:6162305 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066
JBrowse link
G Tut7 terminal uridylyl transferase 7 ISO (MGI:MGI:6162305|PMID:28792939) UniProtKB PMID:28792939 MGI:MGI:6162305 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436
JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl4 ELAV like RNA binding protein 4 ISO (PMID:18218628) UniProt PMID:18218628 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Larp4b La ribonucleoprotein 4B ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chrNW_004955492:113,900...197,753
Ensembl chrNW_004955492:138,374...193,145
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24356969) UniProtKB PMID:24356969 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein ISO (PMID:16364915) UniProtKB PMID:16364915 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex subunit 1 ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (PMID:23386060), (PMID:25038453) BHF-UCL PMID:23386060, PMID:25038453 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Gtpbp1 GTP binding protein 1 ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chrNW_004955413:24,823,113...24,849,522
Ensembl chrNW_004955413:24,823,113...24,852,691
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004955452:3,318,536...3,354,725
Ensembl chrNW_004955452:3,315,133...3,355,508
JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (PMID:16126846) UniProtKB PMID:16126846 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:16410805) RGD
UniProtKB
PMID:737213, PMID:16410805 RGD:11554176 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Prr5l proline rich 5 like ISO (PMID:21964062) UniProtKB PMID:21964062 NCBI chrNW_004955422:9,972,588...10,069,411
Ensembl chrNW_004955422:9,972,588...10,048,669
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:6154479|PMID:25026077)
(MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671)
UniProtKB PMID:25026077, PMID:26000482, PMID:26255671 MGI:MGI:5706859, MGI:MGI:5751631, MGI:MGI:6154479 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase ISO (PMID:25225333), (PMID:26255671)
(PMID:24726324)
CAFA
UniProt
PMID:24726324, PMID:25225333, PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A ISO (PMID:19909337)
(MGI:MGI:3842851|PMID:19322177), (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5706909|PMID:23185455), (MGI:MGI:5751631|PMID:26255671)
UniProtKB PMID:19322177, PMID:19909337, PMID:23185455, PMID:26000482, PMID:26255671 MGI:MGI:3842851, MGI:MGI:5706859, MGI:MGI:5706909, MGI:MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO (PMID:21876179)
PMID:17185417
UniProtKB
UniProt
PMID:17185417, PMID:21876179 RGD:8553432 NCBI chrNW_004955494:3,925,478...3,985,469
Ensembl chrNW_004955494:3,926,413...3,983,736
JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:5795825|PMID:15634918) UniProtKB PMID:15634918 MGI:MGI:5795825 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 ISO (MGI:MGI:5486537|PMID:19716330) UniProtKB PMID:19716330 MGI:MGI:5486537 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 ISO (PMID:21278420) UniProtKB PMID:21278420 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:5486537|PMID:19716330)
(PMID:21278420)
UniProtKB PMID:19716330, PMID:21278420 MGI:MGI:5486537 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (PMID:21336257) UniProtKB PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:14731398) UniProt PMID:14731398 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955431:23,538,224...23,540,039
Ensembl chrNW_004955431:23,538,242...23,539,051
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955574:333,007...333,529
Ensembl chrNW_004955574:333,116...333,529
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955415:32,648,455...32,651,909
Ensembl chrNW_004955415:32,649,054...32,651,936
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO (MGI:MGI:5486537|PMID:19716330) UniProtKB PMID:19716330 MGI:MGI:5486537 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B ISO (PMID:19716330) UniProtKB PMID:19716330 NCBI chrNW_004955413:25,820,428...26,060,681
Ensembl chrNW_004955413:25,886,077...26,048,546
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO (PMID:21984185) UniProtKB PMID:21984185 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
G Tob1 transducer of ERBB2, 1 ISO (PMID:21336257) UniProtKB PMID:21336257 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:5487524|PMID:21278420)
(PMID:12748283)
UniProtKB PMID:12748283, PMID:21278420 MGI:MGI:5487524 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (MGI:MGI:5320815|PMID:22367205) UniProtKB PMID:22367205 MGI:MGI:5320815 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 ISO (MGI:MGI:5486537|PMID:19716330) UniProtKB PMID:19716330 MGI:MGI:5486537 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO (PMID:18337750) MGI PMID:18337750 NCBI chrNW_004955406:39,303,221...39,307,308
Ensembl chrNW_004955406:39,303,175...39,308,778
JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 ISO (PMID:21278420)
(PMID:23644599)
UniProtKB
BHF-UCL
PMID:21278420, PMID:23644599 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:5486537|PMID:19716330)
(PMID:21278420)
UniProtKB PMID:19716330, PMID:21278420 MGI:MGI:5486537 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (PMID:21336257) UniProtKB PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO (MGI:MGI:5486537|PMID:19716330) UniProtKB PMID:19716330 MGI:MGI:5486537 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B ISO (PMID:19716330) UniProtKB PMID:19716330 NCBI chrNW_004955413:25,820,428...26,060,681
Ensembl chrNW_004955413:25,886,077...26,048,546
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO (PMID:21984185) UniProtKB PMID:21984185 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
G Tob1 transducer of ERBB2, 1 ISO (PMID:21336257) UniProtKB PMID:21336257 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:5487524|PMID:21278420)
(MGI:MGI:5795819|PMID:20595389)
(PMID:10330172)
UniProtKB PMID:10330172, PMID:20595389, PMID:21278420 MGI:MGI:5487524, MGI:MGI:5795819 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
regulation of mitochondrial mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd1 FAST kinase domains 1 ISO (PMID:28335001) UniProtKB PMID:28335001 NCBI chrNW_004955449:4,974,131...5,018,426
Ensembl chrNW_004955449:4,977,520...5,018,178
JBrowse link
G Fastkd3 FAST kinase domains 3 ISO (PMID:27789713) UniProtKB PMID:27789713 NCBI chrNW_004955504:5,401,956...5,412,216
Ensembl chrNW_004955504:5,400,544...5,411,401
JBrowse link
G Pde12 phosphodiesterase 12 ISO (PMID:21666256) UniProtKB PMID:21666256 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 ISO (PMID:28335001) UniProtKB PMID:28335001 NCBI chrNW_004955456:7,197,690...7,207,102
Ensembl chrNW_004955456:7,199,560...7,208,808
JBrowse link
regulation of mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase ISO (MGI:MGI:6111276|PMID:29279410) UniProt PMID:29279410 MGI:MGI:6111276 NCBI chrNW_004955478:11,104,445...11,128,980
Ensembl chrNW_004955478:11,105,920...11,128,222
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:19401441) UniProtKB PMID:19401441 NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743
JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit ISO (MGI:MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:MGI:3037407 NCBI chrNW_004955538:3,469,322...3,544,704
Ensembl chrNW_004955538:3,470,249...3,544,704
JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 ISO RGD PMID:18923037 RGD:13524564 NCBI chrNW_004955604:242,627...260,594
Ensembl chrNW_004955604:241,170...260,594
JBrowse link
G Calcr calcitonin receptor ISO (MGI:MGI:85609|PMID:9002981) MGI PMID:9002981 MGI:MGI:85609 NCBI chrNW_004955432:10,310,776...10,391,029
Ensembl chrNW_004955432:10,309,263...10,391,141
JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 ISO (MGI:MGI:5320273|PMID:21078874) UniProtKB PMID:21078874 MGI:MGI:5320273 NCBI chrNW_004955442:9,382,360...9,388,414
Ensembl chrNW_004955442:9,382,354...9,388,414
JBrowse link
G Dcp2 decapping mRNA 2 ISO (PMID:28002401) UniProt PMID:28002401 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (PMID:18279852) UniProt PMID:18279852 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO RGD PMID:22736542 RGD:9586719 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Fmr1 FMRP translational regulator 1 ISO (MGI:MGI:3710908|PMID:17417632) UniProtKB PMID:17417632 MGI:MGI:3710908 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO (MGI:MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:MGI:3037407 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Khsrp KH-type splicing regulatory protein ISO (PMID:16126846) UniProtKB PMID:16126846 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Pabpc4 poly(A) binding protein cytoplasmic 4 ISO (MGI:MGI:5585232|PMID:24469397) MGI PMID:24469397 MGI:MGI:5585232 NCBI chrNW_004955452:17,083,679...17,101,436
Ensembl chrNW_004955452:17,084,805...17,101,026
JBrowse link
G Pcbp4 poly(rC) binding protein 4 ISO (PMID:20817677) MGI PMID:20817677 NCBI chrNW_004955532:3,604,720...3,615,112
Ensembl chrNW_004955532:3,603,975...3,614,290
JBrowse link
G Pcid2 PCI domain containing 2 ISO (PMID:20870947) UniProtKB PMID:20870947 NCBI chrNW_004955404:618,092...639,424
Ensembl chrNW_004955404:618,092...639,704
JBrowse link
G Pum1 pumilio RNA binding family member 1 ISO (PMID:26724866) UniProtKB PMID:26724866 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066
JBrowse link
G Pum2 pumilio RNA binding family member 2 ISO (PMID:26724866) UniProtKB PMID:26724866 NCBI chrNW_004955469:2,810,825...2,886,911
Ensembl chrNW_004955469:2,810,573...2,886,611
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (MGI:MGI:4999688|PMID:20977548) UniProtKB PMID:20977548 MGI:MGI:4999688 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:5284769|PMID:18172933) BHF-UCL PMID:18172933 MGI:MGI:5284769 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Rnasel ribonuclease L ISO (MGI:MGI:5543366|PMID:22441668) MGI PMID:22441668 MGI:MGI:5543366 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052
JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 ISO (MGI:MGI:3615741|PMID:15356574) MGI PMID:15356574 MGI:MGI:3615741 NCBI chrNW_004955599:688,414...690,644 JBrowse link
G Vim vimentin ISO (PMID:21746880) UniProtKB PMID:21746880 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 ISO (PMID:24284625), (PMID:26046440) UniProtKB PMID:24284625, PMID:26046440 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Zfp36 ZFP36 ring finger protein ISO (MGI:MGI:5795825|PMID:15634918)
(PMID:15187101), (PMID:15634918)
(MGI:MGI:3511379|PMID:15467755), (MGI:MGI:5784976|PMID:22701344), (MGI:MGI:5795824|PMID:17288565)
(PMID:11719186), (PMID:15687258), (PMID:20702587), (PMID:9703499)
UniProtKB PMID:9703499, PMID:11719186, PMID:15187101, PMID:15467755, PMID:15634918, PMID:15687258, PMID:17288565, PMID:20702587, PMID:22701344 MGI:MGI:3511379, MGI:MGI:5784976, MGI:MGI:5795824, MGI:MGI:5795825 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 ISO (MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5784967|PMID:24733888), (MGI:MGI:5784976|PMID:22701344)
(PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:20702587), (PMID:24700863), (PMID:25014217), (PMID:26542173)
(PMID:12198173), (PMID:25106868)
(MGI:MGI:5784968|PMID:24700863)
PMID:12748283
PMID:11279239
UniProtKB
MGI
UniProt
PMID:11279239, PMID:12198173, PMID:12748283, PMID:15467755, PMID:15538381, PMID:15687258, PMID:18326031, PMID:19179481, PMID:20622884, PMID:20702587, PMID:22701344, PMID:24700863, PMID:24733888, PMID:25014217, PMID:25106868, PMID:26542173 MGI:MGI:4818820, MGI:MGI:5784967, MGI:MGI:5784968, MGI:MGI:5784976, RGD:11344945, RGD:11344953 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO (MGI:MGI:3511379|PMID:15467755), (MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5784976|PMID:22701344)
(PMID:25106868)
UniProtKB PMID:15467755, PMID:20622884, PMID:22701344, PMID:25106868 MGI:MGI:3511379, MGI:MGI:4818820, MGI:MGI:5784976 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 ISO (PMID:12080348) UniProtKB PMID:12080348 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO (PMID:17101699) UniProtKB PMID:17101699 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      negative regulation of metabolic process 2525
        negative regulation of macromolecule metabolic process 2278
          negative regulation of gene expression 1664
            mRNA catabolic process 165
              mitochondrial mRNA catabolic process + 3
              negative regulation of mRNA catabolic process + 51
              nuclear-transcribed mRNA catabolic process + 77
              polyadenylation-dependent mRNA catabolic process + 1
              polyuridylation-dependent mRNA catabolic process + 2
              positive regulation of mRNA catabolic process + 49
              regulation of mRNA catabolic process + 110
Path 2
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      cellular metabolic process 7025
        cellular aromatic compound metabolic process 3735
          nucleobase-containing compound metabolic process 3563
            nucleic acid metabolic process 3276
              RNA metabolic process 2901
                RNA catabolic process 196
                  mRNA catabolic process 165
                    mitochondrial mRNA catabolic process + 3
                    negative regulation of mRNA catabolic process + 51
                    nuclear-transcribed mRNA catabolic process + 77
                    polyadenylation-dependent mRNA catabolic process + 1
                    polyuridylation-dependent mRNA catabolic process + 2
                    positive regulation of mRNA catabolic process + 49
                    regulation of mRNA catabolic process + 110
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.