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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA catabolic process
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Accession:GO:0006401 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Synonyms:exact_synonym: RNA breakdown;   RNA catabolism;   RNA degradation


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RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:53,982,914...54,011,076
Ensembl chr13:72,760,610...72,787,325 		JBrowse link
G DIS3L DIS3 like exosome 3'-5' exoribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:45,246,867...45,287,521
Ensembl chr15:63,523,512...63,563,813 		JBrowse link
G EXOSC1 exosome component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:94,058,794...94,068,776
Ensembl chr10:97,552,874...97,562,233 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:101,815,368...101,826,464
Ensembl chr 9:130,464,487...130,475,719 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 Ensembl chr 8:143,837,256...143,839,292 JBrowse link
G EXOSC5 exosome component 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21670248) Ensembl
MGI
UniProt		 PMID:21670248 GO_REF:0000107 GO_REF:0000117 NCBI chr19:38,379,884...38,391,309
Ensembl chr19:46,886,326...46,897,703 		JBrowse link
G EXOSC6 exosome component 6 involved_in ISO (PMID:17174896), (PMID:20531386) ComplexPortal PMID:17174896 PMID:20531386 NCBI chr16:54,763,706...54,766,443 JBrowse link
G EXOSC7 exosome component 7 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA Ensembl
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G ISG20 interferon stimulated exonuclease gene 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:67,328,334...67,345,085
Ensembl chr15:86,536,647...86,553,751 		JBrowse link
G MTREX Mtr4 exosome RNA helicase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:58,604,582...58,722,532
Ensembl chr 5:60,227,431...60,345,303 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624 		JBrowse link
G OAS2 2'-5'-oligoadenylate synthetase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15865429) Ensembl
MGI		 PMID:15865429 GO_REF:0000107
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G RNASEH2A ribonuclease H2 subunit A involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:12,363,721...12,375,316
Ensembl chr19:13,112,242...13,119,514 		JBrowse link
G RNASEH2B ribonuclease H2 subunit B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:32,047,830...32,108,573
Ensembl chr13:50,795,701...50,852,909 		JBrowse link
G RNASEH2C ribonuclease H2 subunit C involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:61,076,731...61,079,994
Ensembl chr11:64,411,804...64,413,819 		JBrowse link
G RNASET2 ribonuclease T2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:164,895,396...164,923,008
Ensembl chr 6:169,872,780...169,899,599 		JBrowse link
G SIDT2 SID1 transmembrane family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:112,012,734...112,031,403
Ensembl chr11:115,946,725...115,963,408 		JBrowse link
G SKIC2 SKI2 subunit of superkiller complex involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:31,619,746...31,630,463
Ensembl chr 6:32,506,468...32,516,989 		JBrowse link
G SKIC3 SKI3 subunit of superkiller complex involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:19,794,151...19,892,000
Ensembl chr 5:19,939,324...20,036,558 		JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:88,794,186...89,038,808
Ensembl chr10:92,320,240...92,506,089 		JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:136,035,464...136,038,524
Ensembl chr 5:142,151,441...142,154,262 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894 		JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846)
(PMID:28275056)		 UniProt
CACAO		 PMID:16126846 PMID:28275056 NCBI chr19:5,433,989...5,445,721 JBrowse link
G MOV10 Mov10 RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,327,051...115,353,483
Ensembl chr 1:124,999,353...125,025,820 		JBrowse link
G PLEKHN1 pleckstrin homology domain containing N1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 1:865,290...873,575 JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chr 6:17,140,450...17,153,035 JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,775,084...9,786,710
Ensembl chr 1:10,996,006...11,008,732 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:32,745,217...32,824,985
Ensembl chr 3:33,050,997...33,123,910 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:36,743,341...36,753,261
Ensembl chr 1:38,093,917...38,103,556 		JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chr 6:147,266,039...147,304,289
Ensembl chr 6:151,974,485...151,999,898 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr2A:43,311,744...43,315,928 JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGEL2 angel homolog 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:188,554,632...188,578,497
Ensembl chr 1:193,412,133...193,435,331 		JBrowse link
G BOLL boule homolog, RNA binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:84,976,389...85,036,125
Ensembl chr2B:202,869,379...202,928,563 		JBrowse link
G DAZL deleted in azoospermia like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:16,514,327...16,625,601
Ensembl chr 3:16,851,158...16,862,963 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,259,829...7,306,808
Ensembl chr19:8,114,849...8,147,137 		JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,288,364...49,444,457
Ensembl chr 1:50,853,276...50,951,058 		JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (MGI:5306322|PMID:12456657) UniProt PMID:12456657 MGI:5306322 NCBI chr 5:133,132,030...133,140,771
Ensembl chr 5:139,277,004...139,277,939 		JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) UniProt PMID:16010978 NCBI chr14:2,022,280...2,083,215 JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:182,286,854...182,336,306
Ensembl chr 1:186,608,158...186,613,911 		JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:38,036,565...38,041,014
Ensembl chr 3:38,319,024...38,323,572 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chr19:319,953...334,945 JBrowse link
G RBM10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19508861) Ensembl
MGI		 PMID:19508861 GO_REF:0000107 NCBI chr  X:39,582,480...39,623,749
Ensembl chr  X:47,440,815...47,481,204 		JBrowse link
G RBM38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chr20:53,731,641...53,749,688 JBrowse link
G RBM47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,744,484...34,951,402
Ensembl chr 4:40,597,366...40,640,599 		JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,775,084...9,786,710
Ensembl chr 1:10,996,006...11,008,732 		JBrowse link
G TIRAP TIR domain containing adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:121,100,558...121,112,844
Ensembl chr11:125,018,064...125,022,309 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSDE1 cold shock domain containing E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,796,518...87,837,602
Ensembl chr 1:122,849,903...122,890,959 		JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:8,479,806...8,538,336
Ensembl chr17:8,468,240...8,519,552 		JBrowse link
G IGF2BP2 insulin like growth factor 2 mRNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:182,667,557...182,848,528
Ensembl chr 3:191,142,063...191,320,221 		JBrowse link
G IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:23,994,839...24,148,709
Ensembl chr 7:23,602,905...23,755,473 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G PAIP1 poly(A) binding protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:66,815,814...66,848,051
Ensembl chr 5:71,867,224...71,913,384 		JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:83,491,803...83,527,256 JBrowse link
G YBX1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18625844) Ensembl
MGI		 PMID:18625844 GO_REF:0000107 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G DCP1A decapping mRNA 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:2,057,985...2,118,615
Ensembl chr12:2,007,406...2,065,141 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr11:121,119,720...121,159,513
Ensembl chr11:125,028,616...125,068,807 		JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:37,465,986...37,479,186
Ensembl chr 8:34,642,938...34,656,142 		JBrowse link
G NOCT nocturnin acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chr 4:131,378,656...131,409,711
Ensembl chr 4:142,691,169...142,719,514 		JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chr13:9,420,405...9,579,859
Ensembl chr13:27,798,607...27,921,266 		JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:54,861,349...54,893,279
Ensembl chr11:58,311,235...58,342,561 		JBrowse link
G PATL2 PAT1 homolog 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:23,622,330...23,667,962
Ensembl chr15:41,790,682...41,801,825 		JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:2,057,985...2,118,615
Ensembl chr12:2,007,406...2,065,141 		JBrowse link
G EDC3 enhancer of mRNA decapping 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:53,577,101...53,642,504
Ensembl chr15:73,196,823...73,262,214 		JBrowse link
G EDC4 enhancer of mRNA decapping 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:48,214,694...48,226,165
Ensembl chr16:67,601,515...67,613,012 		JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEN1 flap structure-specific endonuclease 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr11:57,092,270...57,096,828
Ensembl chr11:60,455,474...60,456,616 		JBrowse link
G RNASEH1 ribonuclease H1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:3,550,303...3,578,161
Ensembl chr2A:3,482,772...3,496,978 		JBrowse link
G RNASEH2A ribonuclease H2 subunit A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:12,363,721...12,375,316
Ensembl chr19:13,112,242...13,119,514 		JBrowse link
G SLC25A16 solute carrier family 25 member 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,898,024...64,956,541
Ensembl chr10:67,506,006...67,549,308
Ensembl chr10:67,506,006...67,549,308 		JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G ERI1 exoribonuclease 1 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr 8:10,175,556...10,249,904 JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:143,837,256...143,839,292 JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:37,465,986...37,479,186
Ensembl chr 8:34,642,938...34,656,142 		JBrowse link
G MTPAP mitochondrial poly(A) polymerase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,463,414...30,500,245
Ensembl chr10:30,818,599...30,854,542 		JBrowse link
G TENT2 terminal nucleotidyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:35,622,645...35,696,451
Ensembl chr 5:35,893,841...35,966,932 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr16:30,415,668...30,494,758
Ensembl chr16:49,299,498...49,373,665 		JBrowse link
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr11:57,932,582...57,949,473
Ensembl chr11:61,287,375...61,303,784 		JBrowse link
G TUT4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr 1:51,684,408...51,815,059
Ensembl chr 1:53,292,477...53,422,893 		JBrowse link
G TUT7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr 9:57,433,583...57,498,675
Ensembl chr 9:85,486,521...85,554,745 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,337,337...139,481,479
Ensembl chr 3:146,930,988...147,073,827 		JBrowse link
lncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR82 WD repeat domain 82 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,196,740...52,220,982
Ensembl chr 3:53,426,112...53,450,170 		JBrowse link
G ZC3H4 zinc finger CCCH-type containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,054,086...44,103,981
Ensembl chr19:52,582,170...52,627,715 		JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:119,187,659...119,558,347
Ensembl chr2B:238,030,931...238,347,570 		JBrowse link
G LIN28A lin-28 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:25,674,751...25,693,684
Ensembl chr 1:26,739,268...26,758,028 		JBrowse link
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:102,755,256...102,897,739
Ensembl chr 6:106,640,448...106,772,374 		JBrowse link
G PARN poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:13,363,879...13,556,054
Ensembl chr16:14,787,881...14,977,786 		JBrowse link
G SND1 staphylococcal nuclease and tudor domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:119,647,536...120,084,110
Ensembl chr 7:132,302,235...132,738,223 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chr16:30,415,668...30,494,758
Ensembl chr16:49,299,498...49,373,665 		JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chr 1:51,684,408...51,815,059
Ensembl chr 1:53,292,477...53,422,893 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:36,743,341...36,753,261
Ensembl chr 1:38,093,917...38,103,556 		JBrowse link
miRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) BHF-UCL PMID:15260970 NCBI chr 1:35,148,984...35,196,252
Ensembl chr 1:36,324,733...36,360,832 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 NOT|involved_in ISO
IEA		 (PMID:15260970) BHF-UCL
GOC		 PMID:15260970 GO_REF:0000108 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chr 5:175,695,802...175,780,534
Ensembl chr 5:183,007,081...183,089,997 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chr 5:150,262,907...150,280,215
Ensembl chr 5:156,256,448...156,274,293 		JBrowse link
G LOC100977537 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) BHF-UCL PMID:15260970 NCBI chr 1:35,072,045...35,122,418
Ensembl chr 1:36,249,038...36,299,259 		JBrowse link
G MOV10 Mov10 RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,327,051...115,353,483
Ensembl chr 1:124,999,353...125,025,820 		JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDE12 phosphodiesterase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:57,489,602...57,502,240
Ensembl chr 3:58,696,083...58,699,719 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRPPRC leucine rich pentatricopeptide repeat containing involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22045337)
(PMID:21880015)		 Ensembl
MGI		 PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr2A:43,975,949...44,083,846
Ensembl chr2A:44,914,578...45,021,434 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO3 argonaute RISC catalytic component 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G CNOT10 CCR4-NOT transcription complex subunit 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:32,613,213...32,702,062
Ensembl chr 3:32,920,235...33,008,961 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G CNOT9 CCR4-NOT transcription complex subunit 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr2B:105,826,633...105,854,415
Ensembl chr2B:224,422,467...224,450,133 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:119,187,659...119,558,347
Ensembl chr2B:238,030,931...238,347,570 		JBrowse link
G DXO decapping exoribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566 		JBrowse link
G EXOSC3 exosome component 3 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078 		JBrowse link
G EXOSC5 exosome component 5 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chr19:38,379,884...38,391,309
Ensembl chr19:46,886,326...46,897,703 		JBrowse link
G EXOSC9 exosome component 9 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A involved_in ISO (PMID:10205060) UniProt PMID:10205060 NCBI chr 6:31,476,710...31,491,411 JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B involved_in ISO (PMID:10205060) UniProt PMID:10205060 NCBI chr 6:31,488,882...31,491,412 JBrowse link
G KHSRP KH-type splicing regulatory protein acts_upstream_of_or_within ISO (PMID:22844247) MGI PMID:22844247 NCBI chr19:5,433,989...5,445,721 JBrowse link
G LOC100977537 argonaute RISC component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,072,045...35,122,418
Ensembl chr 1:36,249,038...36,299,259 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12515382) MGI
Ensembl		 PMID:12515382 GO_REF:0000107 NCBI chr 6:31,458,514...31,468,126
Ensembl chr 6:32,344,669...32,354,631 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chr 7:33,094,545...33,104,489 JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12515382) MGI
Ensembl		 PMID:12515382 GO_REF:0000107 NCBI chr 4:138,514,194...138,528,575
Ensembl chr 4:150,171,648...150,185,947 		JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,879,137...110,905,131
Ensembl chr 4:121,431,026...121,458,392 		JBrowse link
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chr17:2,407,331...2,500,418
Ensembl chr17:2,292,498...2,376,277 		JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:28637692 PMID:28792938 PMID:28965759 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr14:2,315,868...2,329,460
Ensembl chr14:20,392,665...20,405,906 		JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:42,922,655...42,924,679
Ensembl chr19:51,459,529...51,459,945 		JBrowse link
G NUDT12 nudix hydrolase 12 involved_in ISO (MGI:6368680|PMID:31101919) UniProt PMID:31101919 MGI:6368680 NCBI chr 5:98,903,740...98,917,763
Ensembl chr 5:104,601,373...104,617,925 		JBrowse link
G NUDT16 nudix hydrolase 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:128,466,119...128,473,186
Ensembl chr 3:135,788,354...135,790,038 		JBrowse link
G PARN poly(A)-specific ribonuclease involved_in IEA InterPro GO_REF:0000002 NCBI chr16:13,363,879...13,556,054
Ensembl chr16:14,787,881...14,977,786 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G RIDA reactive intermediate imine deaminase A homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:94,739,120...94,753,934
Ensembl chr 8:96,923,776...96,938,512 		JBrowse link
G SLFN14 schlafen family member 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:21,232,934...21,250,368
Ensembl chr17:21,530,009...21,539,589 		JBrowse link
G SND1 staphylococcal nuclease and tudor domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:119,647,536...120,084,110
Ensembl chr 7:132,302,235...132,738,223 		JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein F2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:28,007,592...28,041,179
Ensembl chr 1:29,038,831...29,070,533 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:36,743,341...36,753,261
Ensembl chr 1:38,093,917...38,103,556 		JBrowse link
G ZC3H12D zinc finger CCCH-type containing 12D acts_upstream_of_or_within ISO (PMID:24415781) MGI PMID:24415781 NCBI chr 6:147,266,039...147,304,289
Ensembl chr 6:151,974,485...151,999,898 		JBrowse link
G ZFP36 ZFP36 ring finger protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10751406), (PMID:11782475) MGI
Ensembl		 PMID:10751406 PMID:11782475 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within ISO PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:43,311,744...43,315,928 JBrowse link
G ZHX2 zinc fingers and homeoboxes 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1370712) Ensembl
MGI		 PMID:1370712 GO_REF:0000107 NCBI chr 8:119,473,607...119,668,790
Ensembl chr 8:122,401,567...122,404,080 		JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,725,632...32,753,021
Ensembl chr17:38,003,362...38,030,715 		JBrowse link
G CELF1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr11:47,415,600...47,515,254
Ensembl chr11:47,967,831...48,008,487 		JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (PMID:17452450) MGI PMID:17452450 NCBI chr 4:46,374,255...46,482,552
Ensembl chr 4:52,263,010...52,320,307 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:26682942 RGD:329961560 NCBI chr19:7,259,829...7,306,808
Ensembl chr19:8,114,849...8,147,137 		JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,939,300...34,343,419
Ensembl chr16:53,023,425...53,490,231 		JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in ISO (PMID:30067974) UniProt PMID:30067974 NCBI chr 3:177,948,040...178,012,705 JBrowse link
G FXR2 FMR1 autosomal homolog 2 involved_in ISO (MGI:5141571|PMID:21658585) UniProt PMID:21658585 MGI:5141571 NCBI chr17:7,622,855...7,646,340
Ensembl chr17:7,609,736...7,631,758 		JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:119,929,004...120,090,367
Ensembl chr2B:238,847,674...239,007,549 		JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 1:22,501,816...22,536,050
Ensembl chr 1:23,491,310...23,521,977 		JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 4:110,879,137...110,905,131
Ensembl chr 4:121,431,026...121,458,392 		JBrowse link
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chr17:2,407,331...2,500,418
Ensembl chr17:2,292,498...2,376,277 		JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 More... MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr14:2,315,868...2,329,460
Ensembl chr14:20,392,665...20,405,906 		JBrowse link
G NANOS1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chr10:115,603,040...115,607,245 JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chr19:42,922,655...42,924,679
Ensembl chr19:51,459,529...51,459,945 		JBrowse link
G NANOS3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chr19:13,427,661...13,443,218
Ensembl chr19:14,170,699...14,173,013 		JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:30,205,584...30,341,979
Ensembl chr 1:31,230,268...31,364,348 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chr 6:17,140,450...17,153,035 JBrowse link
G RIDA reactive intermediate imine deaminase A homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:94,739,120...94,753,934
Ensembl chr 8:96,923,776...96,938,512 		JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,192,293...14,352,357
Ensembl chr18:17,833,047...17,990,086 		JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chr2A:11,167,353...11,331,339
Ensembl chr2A:11,318,370...11,478,986 		JBrowse link
G YTHDF1 YTH N6-methyladenosine RNA binding protein F1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:59,575,703...59,596,447
Ensembl chr20:61,116,645...61,135,769 		JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein F2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:28,007,592...28,041,179
Ensembl chr 1:29,038,831...29,070,533 		JBrowse link
G YTHDF3 YTH N6-methyladenosine RNA binding protein F3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:59,701,341...59,742,865
Ensembl chr 8:61,375,832...61,413,911 		JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within ISO (PMID:15480992) MGI PMID:15480992 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203 		JBrowse link
G AXIN2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G CIRBP cold inducible RNA binding protein involved_in ISO (PMID:11574538) UniProt PMID:11574538
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:22844247) MGI PMID:22844247 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:136,035,464...136,038,524
Ensembl chr 5:142,151,441...142,154,262 		JBrowse link
G E2F1 E2F transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:29,963,083...29,973,860
Ensembl chr20:31,103,764...31,110,604 		JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,463,859...12,515,953
Ensembl chr22:30,322,502...30,378,322 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21613615)
(PMID:14976220), (PMID:21613615)		 MGI
Ensembl		 PMID:14976220 PMID:21613615 GO_REF:0000107 NCBI chr19:7,259,829...7,306,808
Ensembl chr19:8,114,849...8,147,137 		JBrowse link
G FUS FUS RNA binding protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27378374) MGI
Ensembl		 PMID:27378374 GO_REF:0000107 NCBI chr16:23,775,389...23,786,881
Ensembl chr16:31,551,135...31,562,327 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G IKBKE inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:182,070,565...182,096,797
Ensembl chr 1:186,351,807...186,377,971 		JBrowse link
G LARP1 La ribonucleoprotein 1, translational regulator involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:150,086,829...150,221,401
Ensembl chr 5:156,112,358...156,216,706 		JBrowse link
G LARP1B La ribonucleoprotein 1B involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:120,230,897...120,383,530
Ensembl chr 4:131,533,028...131,678,775 		JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11741878) Ensembl
MGI		 PMID:11741878 GO_REF:0000107 NCBI chr 1:182,286,854...182,336,306
Ensembl chr 1:186,608,158...186,613,911 		JBrowse link
G MEIOC meiosis specific with coiled-coil domain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:12,725,114...12,744,974
Ensembl chr17:12,901,882...12,920,285 		JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:29290617) ARUK-UCL PMID:29290617 NCBI chr 4:110,879,137...110,905,131
Ensembl chr 4:121,431,026...121,458,392 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:21073857 RGD:10040969 NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841 		JBrowse link
G NOCT nocturnin involved_in ISO (MGI:5308514|PMID:22073225) UniProt PMID:22073225 MGI:5308514 NCBI chr 4:131,378,656...131,409,711
Ensembl chr 4:142,691,169...142,719,514 		JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:70,895,376...70,949,969
Ensembl chr14:90,247,035...90,300,705 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:7539456|PMID:32732889)
(PMID:32732889)		 RGD
UniProt		 PMID:16855020 PMID:32732889 MGI:7539456 RGD:10045995 NCBI chr 6:161,361,413...161,523,414 JBrowse link
G RBM10 RNA binding motif protein 10 ISO RGD PMID:19508861 RGD:151667451 NCBI chr  X:39,582,480...39,623,749
Ensembl chr  X:47,440,815...47,481,204 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chr 6:17,140,450...17,153,035 JBrowse link
G RBM46 RNA binding motif protein 46 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25397698) Ensembl
MGI		 PMID:25397698 GO_REF:0000107 NCBI chr 4:147,148,767...147,196,342
Ensembl chr 4:158,966,658...159,014,240 		JBrowse link
G SLC11A1 solute carrier family 11 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9009318) Ensembl
MGI		 PMID:9009318 GO_REF:0000107 NCBI chr2B:105,640,613...105,655,524
Ensembl chr2B:224,238,284...224,252,941 		JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:21822258) MGI PMID:21822258 NCBI chr17:52,083,676...52,087,454
Ensembl chr17:56,937,295...56,944,425 		JBrowse link
G TAF15 TATA-box binding protein associated factor 15 acts_upstream_of_or_within ISO (PMID:27378374) MGI PMID:27378374 NCBI chr17:20,948,186...20,985,925 JBrowse link
G TENT5A terminal nucleotidyltransferase 5A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:79,636,412...79,643,444
Ensembl chr 6:82,901,079...82,908,072 		JBrowse link
G TENT5B terminal nucleotidyltransferase 5B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:26,266,007...26,273,904
Ensembl chr 1:27,321,321...27,329,184 		JBrowse link
G TENT5C terminal nucleotidyltransferase 5C involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:84,894,428...84,916,868
Ensembl chr 1:119,893,916...119,895,091 		JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,492,918...35,572,896
Ensembl chr 1:36,719,770...36,741,355 		JBrowse link
G TRAF2 TNF receptor associated factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,938,935...107,984,797
Ensembl chr 9:136,917,358...136,955,331 		JBrowse link
G TRAF3IP2 TRAF3 interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:109,367,333...109,414,601
Ensembl chr 6:113,444,005...113,485,533 		JBrowse link
G TRAF5 TNF receptor associated factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:186,889,615...186,938,416
Ensembl chr 1:191,754,652...191,802,075 		JBrowse link
G VEGFA vascular endothelial growth factor A ISO RGD PMID:12881220 RGD:1580563 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
G YBX1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313 		JBrowse link
G YBX2 Y-box binding protein 2 acts_upstream_of_or_within ISO (PMID:17035640) MGI PMID:17035640 NCBI chr17:7,319,186...7,325,594
Ensembl chr17:7,306,548...7,312,632 		JBrowse link
G ZAR1 zygote arrest 1 involved_in ISO (PMID:36264786) UniProt PMID:36264786 NCBI chr 4:73,655,842...73,663,037 JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:2,407,331...2,500,418
Ensembl chr17:2,292,498...2,376,277 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:6384430|PMID:31868295) UniProt PMID:31868295 MGI:6384430 NCBI chr 6:161,361,413...161,523,414 JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,463,859...12,515,953
Ensembl chr22:30,322,502...30,378,322 		JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G QKI QKI, KH domain containing RNA binding involved_in ISO (PMID:31792053) UniProt PMID:31792053 NCBI chr 6:161,361,413...161,523,414 JBrowse link
G TENT2 terminal nucleotidyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:35,622,645...35,696,451
Ensembl chr 5:35,893,841...35,966,932 		JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRPPRC leucine rich pentatricopeptide repeat containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21880015)
(PMID:22045337)		 Ensembl
MGI		 PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr2A:43,975,949...44,083,846
Ensembl chr2A:44,914,578...45,021,434 		JBrowse link
G SLIRP SRA stem-loop interacting RNA binding protein acts_upstream_of_or_within ISO (PMID:22045337) MGI PMID:22045337 NCBI chr14:58,262,126...58,271,829
Ensembl chr14:77,462,875...77,516,882 		JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FXR1 FMR1 autosomal homolog 1 involved_in ISO (PMID:25225333) UniProt PMID:25225333 NCBI chr 3:177,948,040...178,012,705 JBrowse link
G PKP1 plakophilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,881,154...176,930,814
Ensembl chr 1:181,182,829...181,232,347 		JBrowse link
G PKP3 plakophilin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:393,047...402,928
Ensembl chr11:433,326...441,325 		JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSDE1 cold shock domain containing E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,796,518...87,837,602
Ensembl chr 1:122,849,903...122,890,959 		JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:8,479,806...8,538,336
Ensembl chr17:8,468,240...8,519,552 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G PAIP1 poly(A) binding protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:66,815,814...66,848,051
Ensembl chr 5:71,867,224...71,913,384 		JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:11051545), (PMID:19029303) ComplexPortal PMID:11051545 PMID:19029303 NCBI chr 6:83,491,803...83,527,256 JBrowse link
G YBX1 Y-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313 		JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1CF APOBEC1 complementation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,451,293...47,538,062
Ensembl chr10:49,588,168...49,675,543 		JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203 		JBrowse link
G DHX34 DExH-box helicase 34 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,337,299...44,371,403
Ensembl chr19:52,996,392...53,026,046 		JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B involved_in ISO (PMID:12881431) ComplexPortal PMID:12881431 NCBI chr 5:173,364,301...173,370,974 JBrowse link
G NBAS NBAS subunit of NRZ tethering complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:15,159,193...15,552,121
Ensembl chr2A:15,293,512...15,685,820 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:18447585) UniProt PMID:18447585 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G SECISBP2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24274065) Ensembl
MGI		 PMID:24274065 GO_REF:0000107 NCBI chr 9:60,408,272...60,456,945
Ensembl chr 9:88,454,531...88,498,095 		JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:12881431) ComplexPortal PMID:12881431 NCBI chr 6:83,491,803...83,527,256 JBrowse link
G UPF3A UPF3A regulator of nonsense mediated mRNA decay involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:95,349,449...95,373,984
Ensembl chr13:114,415,784...114,438,692 		JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT4A terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 5:7,032,809...7,077,080
Ensembl chr 5:6,724,029...6,752,159 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr16:30,415,668...30,494,758
Ensembl chr16:49,299,498...49,373,665 		JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,953,343...44,957,465
Ensembl chr17:49,825,646...49,826,683 		JBrowse link
negative regulation of RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:70,895,376...70,949,969
Ensembl chr14:90,247,035...90,300,705 		JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:61,229,841...61,247,565
Ensembl chr 5:62,851,099...62,865,786 		JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSB small RNA binding exonuclease protection factor La involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:57,071,158...57,084,428
Ensembl chr2B:174,536,382...174,549,604 		JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DXO decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 8:143,837,256...143,839,292 JBrowse link
G EXOSC5 exosome component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:38,379,884...38,391,309
Ensembl chr19:46,886,326...46,897,703 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,337,337...139,481,479
Ensembl chr 3:146,930,988...147,073,827 		JBrowse link
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:101,815,368...101,826,464
Ensembl chr 9:130,464,487...130,475,719 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
nuclear RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDR82 WD repeat domain 82 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,196,740...52,220,982
Ensembl chr 3:53,426,112...53,450,170 		JBrowse link
G ZC3H4 zinc finger CCCH-type containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,054,086...44,103,981
Ensembl chr19:52,582,170...52,627,715 		JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,148,984...35,196,252
Ensembl chr 1:36,324,733...36,360,832 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:58,594,956...58,603,570
Ensembl chr17:63,689,082...63,696,142 		JBrowse link
G DHX34 DExH-box helicase 34 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,337,299...44,371,403
Ensembl chr19:52,996,392...53,026,046 		JBrowse link
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in ISO (PMID:23756462) UniProt PMID:23756462 NCBI chr2B:119,187,659...119,558,347
Ensembl chr2B:238,030,931...238,347,570 		JBrowse link
G DXO decapping exoribonuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:143,837,256...143,839,292 JBrowse link
G EXOSC9 exosome component 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:37,465,986...37,479,186
Ensembl chr 8:34,642,938...34,656,142 		JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr19:17,785,580...17,801,866
Ensembl chr19:18,757,390...18,773,812 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro GO_REF:0000002 NCBI chr19:1,330,469...1,337,610
Ensembl chr19:2,302,280...2,313,255 		JBrowse link
G MRTO4 MRT4 homolog, ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:18,210,403...18,218,800
Ensembl chr 1:19,257,147...19,265,038 		JBrowse link
G NBAS NBAS subunit of NRZ tethering complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:15,159,193...15,552,121
Ensembl chr2A:15,293,512...15,685,820 		JBrowse link
G NBDY negative regulator of P-body association involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,981,540...49,075,726
Ensembl chr  X:57,133,097...57,133,303 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chr19:319,953...334,945 JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,492,918...35,572,896
Ensembl chr 1:36,719,770...36,741,355 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:139,337,337...139,481,479
Ensembl chr 3:146,930,988...147,073,827 		JBrowse link
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SKIC2 SKI2 subunit of superkiller complex involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:31,619,746...31,630,463
Ensembl chr 6:32,506,468...32,516,989 		JBrowse link
G SKIC3 SKI3 subunit of superkiller complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:19,794,151...19,892,000
Ensembl chr 5:19,939,324...20,036,558 		JBrowse link
G SKIC8 SKI8 subunit of superkiller complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,204,199...57,229,052
Ensembl chr15:76,175,131...76,194,368 		JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:38,793,212...38,902,686
Ensembl chr16:57,919,283...58,027,472 		JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (PMID:17452450) MGI PMID:17452450 NCBI chr 4:46,374,255...46,482,552
Ensembl chr 4:52,263,010...52,320,307 		JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA UniProt GO_REF:0000117 NCBI chr11:121,119,720...121,159,513
Ensembl chr11:125,028,616...125,068,807 		JBrowse link
G PABPN1L PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chr16:69,579,421...69,583,803
Ensembl chr16:89,234,156...89,237,595 		JBrowse link
G PAN2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA UniProt GO_REF:0000104 NCBI chr12:32,581,728...32,598,445
Ensembl chr12:32,835,235...32,853,645 		JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA UniProt GO_REF:0000104 NCBI chr13:9,420,405...9,579,859
Ensembl chr13:27,798,607...27,921,266 		JBrowse link
G PDE12 phosphodiesterase 12 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:57,489,602...57,502,240
Ensembl chr 3:58,696,083...58,699,719 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G RC3H2 ring finger and CCCH-type domains 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:93,975,164...94,031,516
Ensembl chr 9:122,313,791...122,365,102 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814898) Ensembl
MGI		 PMID:15814898 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814898) Ensembl
MGI		 PMID:15814898 GO_REF:0000107 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814898) Ensembl
MGI		 PMID:15814898 GO_REF:0000107 NCBI chr2A:43,311,744...43,315,928 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in ISO PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:175,695,802...175,780,534
Ensembl chr 5:183,007,081...183,089,997 		JBrowse link
G CSDE1 cold shock domain containing E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,796,518...87,837,602
Ensembl chr 1:122,849,903...122,890,959 		JBrowse link
G GTPBP2 GTP binding protein 2 acts_upstream_of_or_within ISO (PMID:25061210) MGI PMID:25061210 NCBI chr 6:43,210,517...43,219,296
Ensembl chr 6:44,500,159...44,511,300 		JBrowse link
G HBS1L HBS1 like translational GTPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,732,351...132,826,210
Ensembl chr 6:136,832,884...136,922,957 		JBrowse link
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:61,229,841...61,247,565
Ensembl chr 5:62,851,099...62,865,786 		JBrowse link
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:61,229,841...61,247,565
Ensembl chr 5:62,851,099...62,865,786 		JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCLAF1 BCL2 associated transcription factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:134,023,195...134,054,507
Ensembl chr 6:138,115,451...138,137,108 		JBrowse link
G CASC3 CASC3 exon junction complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr17:17,116,864...17,148,752
Ensembl chr17:17,339,060...17,370,076 		JBrowse link
G CTIF cap binding complex dependent translation initiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:41,923,292...42,251,321
Ensembl chr18:45,358,282...45,604,625 		JBrowse link
G DCP1A decapping mRNA 1A involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA UniProt GO_REF:0000043 NCBI chr12:2,057,985...2,118,615
Ensembl chr12:2,007,406...2,065,141 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G DHX34 DExH-box helicase 34 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:44,337,299...44,371,403
Ensembl chr19:52,996,392...53,026,046 		JBrowse link
G EIF3E eukaryotic translation initiation factor 3 subunit E involved_in ISO (PMID:17468741) UniProt PMID:17468741 NCBI chr 8:104,848,222...104,895,349 JBrowse link
G ETF1 eukaryotic translation termination factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:133,886,074...133,922,682
Ensembl chr 5:140,015,518...140,051,974 		JBrowse link
G LOC100988043 eukaryotic initiation factor 4A-III involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chr17:74,221,793...74,233,738 JBrowse link
G MAGOH mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:52,499,829...52,511,710
Ensembl chr 1:54,099,198...54,111,142 		JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,632,174...10,639,758
Ensembl chr12:10,898,716...10,905,958 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G PNRC2 proline rich nuclear receptor coactivator 2 involved_in ISO (PMID:19150429) UniProt PMID:19150429 NCBI chr 1:23,155,018...23,167,105 JBrowse link
G PYM1 PYM homolog 1, exon junction complex associated factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,984,385...33,010,649
Ensembl chr12:33,705,815...33,736,389 		JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:121,830,424...121,836,378
Ensembl chr 1:113,834,110...113,839,429 		JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:11546874)
(PMID:16209946)		 UniProt PMID:11546874 PMID:16209946 NCBI chr16:1,110,249...1,124,975 JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:2,352,620...2,354,878 JBrowse link
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:19,433,999...19,475,539 JBrowse link
G SMG5 SMG5 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chr 1:131,592,368...131,634,443
Ensembl chr 1:135,422,268...135,455,734 		JBrowse link
G SMG6 SMG6 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr17:2,050,825...2,294,892
Ensembl chr17:1,937,630...2,179,535 		JBrowse link
G SMG7 SMG7 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chr 1:159,002,363...159,084,572
Ensembl chr 1:163,159,362...163,242,285 		JBrowse link
G SMG8 SMG8 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr17:53,279,808...53,285,377
Ensembl chr17:58,127,969...58,133,370 		JBrowse link
G SMG9 SMG9 nonsense mediated mRNA decay factor involved_in IEA Ensembl
TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr19:40,679,952...40,704,104
Ensembl chr19:49,285,796...49,309,980 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224 		JBrowse link
G UPF2 UPF2 regulator of nonsense mediated mRNA decay involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:11,924,483...12,047,617
Ensembl chr10:11,916,893...12,020,760 		JBrowse link
G UPF3A UPF3A regulator of nonsense mediated mRNA decay NOT|involved_in ISO
IEA		 (PMID:16601204) UniProt
InterPro		 PMID:16601204 GO_REF:0000002 NCBI chr13:95,349,449...95,373,984
Ensembl chr13:114,415,784...114,438,692 		JBrowse link
G UPF3B UPF3B regulator of nonsense mediated mRNA decay involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23821644) InterPro
MGI
TreeGrafter
Ensembl		 PMID:23821644 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:108,897,140...108,916,620
Ensembl chr  X:119,292,231...119,311,632 		JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT2 CCR4-NOT transcription complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:67,753,703...67,865,375
Ensembl chr12:70,520,722...70,633,149 		JBrowse link
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr19:51,071,167...51,089,289
Ensembl chr19:59,913,040...59,931,108 		JBrowse link
G CNOT6 CCR4-NOT transcription complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:175,695,802...175,780,534
Ensembl chr 5:183,007,081...183,089,997 		JBrowse link
G CNOT6L CCR4-NOT transcription complex subunit 6 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:46,374,255...46,482,552
Ensembl chr 4:52,263,010...52,320,307 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within
involved_in		 ISO (PMID:18625844)
(PMID:21336257)		 MGI
UniProt		 PMID:18625844 PMID:21336257 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11337385) Ensembl
MGI		 PMID:11337385 GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G PAN2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr12:32,581,728...32,598,445
Ensembl chr12:32,835,235...32,853,645 		JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr13:9,420,405...9,579,859
Ensembl chr13:27,798,607...27,921,266 		JBrowse link
G PARN poly(A)-specific ribonuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18337750) TreeGrafter
MGI		 PMID:18337750 GO_REF:0000118 NCBI chr16:13,363,879...13,556,054
Ensembl chr16:14,787,881...14,977,786 		JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:157,682,286...157,707,632
Ensembl chr 6:162,694,724...162,716,700 		JBrowse link
G SAMD4A sterile alpha motif domain containing 4A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:35,153,002...35,380,018
Ensembl chr14:53,566,636...53,654,151 		JBrowse link
G SAMD4B sterile alpha motif domain containing 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,440,769...36,483,953
Ensembl chr19:45,002,848...45,031,649 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814898) Ensembl
MGI		 PMID:15814898 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chr16:30,415,668...30,494,758
Ensembl chr16:49,299,498...49,373,665 		JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3L2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr2B:119,187,659...119,558,347
Ensembl chr2B:238,030,931...238,347,570 		JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr 1:51,684,408...51,815,059
Ensembl chr 1:53,292,477...53,422,893 		JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chr 9:57,433,583...57,498,675
Ensembl chr 9:85,486,521...85,554,745 		JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,288,364...49,444,457
Ensembl chr 1:50,853,276...50,951,058 		JBrowse link
G LARP4B La ribonucleoprotein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:842,621...966,106
Ensembl chr10:894,957...971,154 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:5903342|PMID:28188285) UniProt PMID:28188285 MGI:5903342 NCBI chr 6:161,361,413...161,523,414 JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24356969) UniProt PMID:24356969 NCBI chr 6:17,140,450...17,153,035 JBrowse link
G TENT4A terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 5:7,032,809...7,077,080
Ensembl chr 5:6,724,029...6,752,159 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr16:30,415,668...30,494,758
Ensembl chr16:49,299,498...49,373,665 		JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:102,755,256...102,897,739
Ensembl chr 6:106,640,448...106,772,374 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:36,743,341...36,753,261
Ensembl chr 1:38,093,917...38,103,556 		JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:70,308,480...70,324,729
Ensembl chr10:72,981,196...72,997,070 		JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRSF1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) UniProt PMID:29967381 NCBI chr 4:53,384,303...53,404,706 JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,793,212...38,902,686
Ensembl chr16:57,919,283...58,027,472 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G CNOT8 CCR4-NOT transcription complex subunit 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:150,262,907...150,280,215
Ensembl chr 5:156,256,448...156,274,293 		JBrowse link
G GTPBP1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr22:19,621,159...19,648,848
Ensembl chr22:37,438,626...37,462,933 		JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chr 1:22,501,816...22,536,050
Ensembl chr 1:23,491,310...23,521,977 		JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chr19:5,433,989...5,445,721 JBrowse link
G MOV10 Mov10 RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,327,051...115,353,483
Ensembl chr 1:124,999,353...125,025,820 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:737213 GO_REF:0000107 RGD:11554176 NCBI chr2A:55,792,412...55,848,242
Ensembl chr2A:56,931,365...56,986,326 		JBrowse link
G PRR5L proline rich 5 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:36,269,291...36,438,954
Ensembl chr11:36,223,385...36,311,659 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G TTC5 tetratricopeptide repeat domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:1,163,280...1,180,212
Ensembl chr14:19,216,993...19,233,797 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,269,878...18,306,199
Ensembl chr19:19,292,725...19,313,224 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:36,743,341...36,753,261
Ensembl chr 1:38,093,917...38,103,556 		JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:131,002,580...131,068,513
Ensembl chr 7:143,489,750...143,555,438 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr2A:43,311,744...43,315,928 JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,793,212...38,902,686
Ensembl chr16:57,919,283...58,027,472 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:88,794,186...89,038,808
Ensembl chr10:92,320,240...92,506,089 		JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G NANOS2 nanos C2HC-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:42,922,655...42,924,679
Ensembl chr19:51,459,529...51,459,945 		JBrowse link
G NANOS3 nanos C2HC-type zinc finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,427,661...13,443,218
Ensembl chr19:14,170,699...14,173,013 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,149,646...21,240,006
Ensembl chr22:38,850,107...39,045,914 		JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chr17:72,035,737...72,185,489
Ensembl chr17:77,633,564...77,738,511 		JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,953,343...44,957,465
Ensembl chr17:49,825,646...49,826,683 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr2A:43,311,744...43,315,928 JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18337750) MGI
Ensembl		 PMID:18337750 GO_REF:0000107 NCBI chr 1:178,907,317...178,911,410
Ensembl chr 1:183,201,297...183,205,404 		JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,793,212...38,902,686
Ensembl chr16:57,919,283...58,027,472 		JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G CPEB3 cytoplasmic polyadenylation element binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:88,794,186...89,038,808
Ensembl chr10:92,320,240...92,506,089 		JBrowse link
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,463,859...12,515,953
Ensembl chr22:30,322,502...30,378,322 		JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chr 8:97,346,433...97,365,628
Ensembl chr 8:99,518,347...99,537,614 		JBrowse link
G POLR2G RNA polymerase II subunit G involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:58,116,833...58,122,031
Ensembl chr11:61,470,866...61,476,073 		JBrowse link
G TNRC6A trinucleotide repeat containing adaptor 6A involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:24,966,474...25,064,998 JBrowse link
G TNRC6B trinucleotide repeat containing adaptor 6B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:21,149,646...21,240,006
Ensembl chr22:38,850,107...39,045,914 		JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:72,035,737...72,185,489
Ensembl chr17:77,633,564...77,738,511 		JBrowse link
G TOB1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,953,343...44,957,465
Ensembl chr17:49,825,646...49,826,683 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
pre-mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:111,613,940...111,623,539
Ensembl chr11:115,547,973...115,557,883 		JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAPRIN1 cell cycle associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:34,023,981...34,079,335
Ensembl chr11:33,902,072...33,957,134 		JBrowse link
regulation of mitochondrial mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FASTK Fas activated serine/threonine kinase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 7:142,663,470...142,667,730
Ensembl chr 7:154,816,011...154,820,266 		JBrowse link
G FASTKD1 FAST kinase domains 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:56,798,465...56,843,962
Ensembl chr2B:174,267,757...174,312,363 		JBrowse link
G FASTKD2 FAST kinase domains 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr2B:93,999,837...94,030,683
Ensembl chr2B:212,129,283...212,154,329 		JBrowse link
G FASTKD3 FAST kinase domains 3 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:8,185,897...8,195,780
Ensembl chr 5:8,003,812...8,017,309 		JBrowse link
G PDE12 phosphodiesterase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:57,489,602...57,502,240
Ensembl chr 3:58,696,083...58,699,719 		JBrowse link
G TBRG4 transforming growth factor beta regulator 4 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:45,813,586...45,825,311
Ensembl chr 7:45,879,666...45,891,351 		JBrowse link
regulation of mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 ISO RGD PMID:26846850 RGD:11526737 NCBI chr 1:35,148,984...35,196,252
Ensembl chr 1:36,324,733...36,360,832 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 ISO RGD PMID:26846850 RGD:11526737 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G ALKBH5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,725,632...32,753,021
Ensembl chr17:38,003,362...38,030,715 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:1,329,745...1,332,315
Ensembl chr14:19,381,911...19,384,542 		JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit acts_upstream_of_or_within ISO (PMID:14976220) MGI PMID:14976220 NCBI chr14:85,851,908...85,950,489
Ensembl chr14:105,635,757...105,714,465 		JBrowse link
G CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 ISO RGD PMID:18923037 RGD:13524564 NCBI chr19:50,849,785...50,880,904
Ensembl chr19:59,701,451...59,724,809 		JBrowse link
G CALCR calcitonin receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9002981) Ensembl
MGI		 PMID:9002981 GO_REF:0000107 NCBI chr 7:85,382,167...85,532,562
Ensembl chr 7:98,975,906...99,047,162 		JBrowse link
G CARHSP1 calcium regulated heat stable protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:7,788,614...7,802,850
Ensembl chr16:9,024,014...9,039,900 		JBrowse link
G CSDC2 cold shock domain containing C2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:22,455,605...22,471,836
Ensembl chr22:40,542,255...40,558,513 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 ISO RGD PMID:22736542 RGD:9586719 NCBI chr 1:49,288,364...49,444,457
Ensembl chr 1:50,853,276...50,951,058 		JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321 		JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:177,948,040...178,012,705 JBrowse link
G FXR2 FMR1 autosomal homolog 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:7,622,855...7,646,340
Ensembl chr17:7,609,736...7,631,758 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14976220) Ensembl
MGI		 PMID:14976220 GO_REF:0000107 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894 		JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chr19:5,433,989...5,445,721 JBrowse link
G PABPC4 poly(A) binding protein cytoplasmic 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24469397) Ensembl
MGI		 PMID:24469397 GO_REF:0000107 NCBI chr 1:38,846,296...38,862,371
Ensembl chr 1:40,172,657...40,188,308 		JBrowse link
G PCBP4 poly(rC) binding protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20817677) MGI
Ensembl		 PMID:20817677 GO_REF:0000107 NCBI chr 3:51,898,857...51,908,932
Ensembl chr 3:53,127,448...53,137,293 		JBrowse link
G PCID2 PCI domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,319,699...94,350,763
Ensembl chr13:113,388,251...113,419,251 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,030,885...3,062,642
Ensembl chr19:3,982,555...4,015,167 		JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:30,205,584...30,341,979
Ensembl chr 1:31,230,268...31,364,348 		JBrowse link
G PUM2 pumilio RNA binding family member 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:20,235,169...20,337,667
Ensembl chr2A:20,350,690...20,435,174 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (MGI:4999688|PMID:20977548) UniProt PMID:20977548 MGI:4999688 NCBI chr 6:17,140,450...17,153,035 JBrowse link
G RBM33 RNA binding motif protein 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:147,244,030...147,380,702
Ensembl chr 7:158,958,099...159,089,137 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G RNASEL ribonuclease L involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22441668) Ensembl
MGI		 PMID:22441668 GO_REF:0000107 NCBI chr 1:158,092,346...158,108,026
Ensembl chr 1:161,741,645...161,760,045 		JBrowse link
G SAMD4A sterile alpha motif domain containing 4A involved_in IEA InterPro GO_REF:0000002 NCBI chr14:35,153,002...35,380,018
Ensembl chr14:53,566,636...53,654,151 		JBrowse link
G SAMD4B sterile alpha motif domain containing 4B involved_in IEA InterPro GO_REF:0000002 NCBI chr19:36,440,769...36,483,953
Ensembl chr19:45,002,848...45,031,649 		JBrowse link
G SCGB1A1 secretoglobin family 1A member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15356574) Ensembl
MGI		 PMID:15356574 GO_REF:0000107 NCBI chr11:57,774,560...57,780,334
Ensembl chr11:61,133,649...61,137,873 		JBrowse link
G SENP1 SUMO specific peptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,624,200...40,689,837
Ensembl chr12:41,507,348...41,558,969 		JBrowse link
G VIM vimentin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642 		JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 4:55,701,639...55,738,377
Ensembl chr 4:62,095,948...62,132,609 		JBrowse link
G YTHDF1 YTH N6-methyladenosine RNA binding protein F1 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr20:59,575,703...59,596,447
Ensembl chr20:61,116,645...61,135,769 		JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein F2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:28,007,592...28,041,179
Ensembl chr 1:29,038,831...29,070,533 		JBrowse link
G YTHDF3 YTH N6-methyladenosine RNA binding protein F3 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:59,701,341...59,742,865
Ensembl chr 8:61,375,832...61,413,911 		JBrowse link
G ZC3H14 zinc finger CCCH-type containing 14 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr14:69,183,212...69,243,438
Ensembl chr14:88,540,482...88,590,757 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15467755) Ensembl
MGI		 PMID:15467755 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15467755) MGI
UniProt
Ensembl		 PMID:15467755 GO_REF:0000107 GO_REF:0000117 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805 		JBrowse link
G ZFP36L2 ZFP36 ring finger protein like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15467755) UniProt
MGI
Ensembl		 PMID:15467755 GO_REF:0000107 GO_REF:0000117 NCBI chr2A:43,311,744...43,315,928 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656 		JBrowse link
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:8,479,806...8,538,336
Ensembl chr17:8,468,240...8,519,552 		JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASC3 CASC3 exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,116,864...17,148,752
Ensembl chr17:17,339,060...17,370,076 		JBrowse link
G LOC100988043 eukaryotic initiation factor 4A-III involved_in ISO (PMID:19478851) ComplexPortal PMID:19478851 NCBI chr17:74,221,793...74,233,738 JBrowse link
G MAGOH mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:52,499,829...52,511,710
Ensembl chr 1:54,099,198...54,111,142 		JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:121,830,424...121,836,378
Ensembl chr 1:113,834,110...113,839,429 		JBrowse link
regulation of RNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NLRP5 NLR family pyrin domain containing 5 acts_upstream_of_or_within ISO (PMID:11062459) MGI PMID:11062459 NCBI chr19:53,021,034...53,083,590
Ensembl chr19:61,818,345...61,879,538 		JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX49 DEAD-box helicase 49 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,357,682...18,366,614
Ensembl chr19:19,364,949...19,373,869 		JBrowse link
RNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DXO decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566 		JBrowse link
G LIN28B lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:102,755,256...102,897,739
Ensembl chr 6:106,640,448...106,772,374 		JBrowse link
G TNFRSF1B TNF receptor superfamily member 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11588035) Ensembl
MGI		 PMID:11588035 GO_REF:0000107 NCBI chr 1:10,915,743...10,957,765
Ensembl chr 1:12,130,663...12,172,646 		JBrowse link
G ZC3H18 zinc finger CCCH-type containing 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,282,652...69,345,077
Ensembl chr16:88,944,517...89,005,199 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11588035) Ensembl
MGI		 PMID:11588035 GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
RNA fragment catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBR1 debranching RNA lariats 1 involved_in ISO (PMID:37656279) UniProt PMID:37656279 NCBI chr 3:135,188,636...135,202,934
Ensembl chr 3:142,639,712...142,653,016 		JBrowse link
RNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (MGI:5816163|PMID:27510903) BHF-UCL PMID:27510903 MGI:5816163 NCBI chr 4:155,383,245...155,425,479
Ensembl chr 4:167,157,770...167,214,065 		JBrowse link
G PHAX phosphorylated adaptor for RNA export involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:122,005,976...122,032,326
Ensembl chr 5:127,776,529...127,803,619 		JBrowse link
G ZCCHC17 zinc finger CCHC-type containing 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:30,576,876...30,645,156
Ensembl chr 1:31,597,212...31,665,373 		JBrowse link
RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:61,229,841...61,247,565
Ensembl chr 5:62,851,099...62,865,786 		JBrowse link
rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:53,982,914...54,011,076
Ensembl chr13:72,760,610...72,787,325 		JBrowse link
G DIS3L DIS3 like exosome 3'-5' exoribonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:45,246,867...45,287,521
Ensembl chr15:63,523,512...63,563,813 		JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,397,697...14,420,618
Ensembl chr16:23,940,716...23,963,894 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 8:143,837,256...143,839,292 JBrowse link
G EXOSC5 exosome component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:38,379,884...38,391,309
Ensembl chr19:46,886,326...46,897,703 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
G SLFN11 schlafen family member 11 involved_in ISO PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr17:21,412,361...21,436,650
Ensembl chr17:21,715,569...21,727,019 		JBrowse link
G SLFN12 schlafen family member 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,359,252...21,384,308
Ensembl chr17:21,652,566...21,676,326 		JBrowse link
G SLFN13 schlafen family member 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,343,027...21,354,521
Ensembl chr17:21,641,078...21,646,159 		JBrowse link
G SLFN14 schlafen family member 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:21,232,934...21,250,368
Ensembl chr17:21,530,009...21,539,589 		JBrowse link
G TRIR telomerase RNA component interacting RNase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,293,236...12,297,338
Ensembl chr19:13,038,837...13,046,866 		JBrowse link
G XRN1 5'-3' exoribonuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,337,337...139,481,479
Ensembl chr 3:146,930,988...147,073,827 		JBrowse link
siRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) BHF-UCL PMID:15260970 NCBI chr 1:35,148,984...35,196,252
Ensembl chr 1:36,324,733...36,360,832 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) BHF-UCL PMID:15260970 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G LOC100977537 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) BHF-UCL PMID:15260970 NCBI chr 1:35,072,045...35,122,418
Ensembl chr 1:36,249,038...36,299,259 		JBrowse link
sno(s)RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:128,466,119...128,473,186
Ensembl chr 3:135,788,354...135,790,038 		JBrowse link
snRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBM7 RNA binding motif protein 7 involved_in ISO (PMID:25852104) UniProt PMID:25852104 NCBI chr11:109,274,678...109,284,568
Ensembl chr11:113,117,771...113,131,348 		JBrowse link
target-directed miRNA degradation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOB elongin B involved_in ISO (PMID:33184237) FlyBase PMID:33184237 NCBI chr16:1,631,179...1,637,114 JBrowse link
G ELOC elongin C involved_in ISO (PMID:33184237) FlyBase PMID:33184237 NCBI chr 8:70,479,805...70,506,142
Ensembl chr 8:72,121,035...72,151,085 		JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184237) FlyBase PMID:33184237 NCBI chr10:70,308,480...70,324,729
Ensembl chr10:72,981,196...72,997,070 		JBrowse link
telomerase RNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475 		JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:155,383,245...155,425,479
Ensembl chr 4:167,157,770...167,214,065 		JBrowse link
G PARN poly(A)-specific ribonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:13,363,879...13,556,054
Ensembl chr16:14,787,881...14,977,786 		JBrowse link
TRAMP-dependent tRNA surveillance pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOSC10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:101,815,368...101,826,464
Ensembl chr 9:130,464,487...130,475,719 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:37,611,173...37,634,869
Ensembl chr 9:38,552,659...38,558,078 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:44,877,339...44,913,510
Ensembl chr 3:45,932,343...46,023,269 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:18,208,074...18,217,426
Ensembl chr13:36,638,406...36,647,273 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:114,001,770...114,017,395
Ensembl chr 4:125,138,668...125,154,288 		JBrowse link
tRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POP1 POP1 homolog, ribonuclease P/MRP subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:94,754,028...94,796,374
Ensembl chr 8:96,944,588...96,979,328 		JBrowse link
G SLFN11 schlafen family member 11 involved_in ISO PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr17:21,412,361...21,436,650
Ensembl chr17:21,715,569...21,727,019 		JBrowse link
G SLFN13 schlafen family member 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,343,027...21,354,521
Ensembl chr17:21,641,078...21,646,159 		JBrowse link
tRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANG angiogenin involved_in ISO (MGI:6713610|PMID:33986151) UniProt PMID:33986151 MGI:6713610 NCBI chr14:1,548,693...1,558,528
Ensembl chr14:19,614,950...19,615,393 		JBrowse link
tRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL1 methyltransferase 1, tRNA methylguanosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,154,374...31,158,175
Ensembl chr12:31,414,941...31,418,588 		JBrowse link
G NSUN2 NOP2/Sun RNA methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,921,073...6,953,622
Ensembl chr 5:6,596,414...6,629,121 		JBrowse link
G TRDMT1 tRNA aspartic acid methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:17,460,091...17,518,855
Ensembl chr10:17,738,374...17,791,345 		JBrowse link
tRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TRNT1 tRNA nucleotidyl transferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:3,069,858...3,095,006
Ensembl chr 3:3,173,943...3,194,672 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    metabolic process 10303
      organic substance metabolic process 9869
        macromolecule metabolic process 8341
          macromolecule catabolic process 1355
            RNA catabolic process 282
              21U-RNA catabolic process 0
              DNA replication, removal of RNA primer + 4
              RNA destabilization + 97
              RNA fragment catabolic process 1
              RNA surveillance + 15
              lncRNA catabolic process 2
              mRNA catabolic process + 234
              miRNA catabolic process + 14
              mitochondrial RNA catabolic process + 6
              negative regulation of RNA catabolic process + 86
              polyadenylation-dependent RNA catabolic process + 1
              pre-mRNA catabolic process 1
              rRNA catabolic process + 16
              regulation of RNA stability + 175
              siRNA catabolic process 0
              snRNA catabolic process + 2
              sno(s)RNA catabolic process + 2
              tRNA decay + 14
Path 2
Term Annotations click to browse term
  biological_process 16440
    metabolic process 10303
      organic substance metabolic process 9869
        organic cyclic compound metabolic process 5562
          nucleobase-containing compound metabolic process 5109
            nucleic acid metabolic process 4613
              nucleic acid catabolic process 667
                RNA catabolic process 282
                  21U-RNA catabolic process 0
                  DNA replication, removal of RNA primer + 4
                  RNA destabilization + 97
                  RNA fragment catabolic process 1
                  RNA surveillance + 15
                  lncRNA catabolic process 2
                  mRNA catabolic process + 234
                  miRNA catabolic process + 14
                  mitochondrial RNA catabolic process + 6
                  negative regulation of RNA catabolic process + 86
                  polyadenylation-dependent RNA catabolic process + 1
                  pre-mRNA catabolic process 1
                  rRNA catabolic process + 16
                  regulation of RNA stability + 175
                  siRNA catabolic process 0
                  snRNA catabolic process + 2
                  sno(s)RNA catabolic process + 2
                  tRNA decay + 14
paths to the root