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ONTOLOGY REPORT - ANNOTATIONS


Term:tRNA metabolic process
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Accession:GO:0006399 term browser browse the term
Definition:The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
Synonyms:exact_synonym: tRNA metabolism


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tRNA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtd1 D-aminoacyl-tRNA deacylase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:138,770,573...138,931,544
Ensembl chr 3:138,770,574...138,931,549
JBrowse link
G Dtd2 D-aminoacyl-tRNA deacylase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:72,781,229...72,786,835
Ensembl chr 6:72,780,543...72,786,830
JBrowse link
alanyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 IDA
IBA
ISO
PMID:21873635
MGI:MGI:3618596 (MGI:MGI:3640843|PMID:16906134), (MGI:MGI:5905209|PMID:27622773)
(PMID:27622773), (PMID:28493438)
RGD PMID:16906134, PMID:27622773, PMID:28493438, PMID:2040280, PMID:21873635 MGI:MGI:3640843, MGI:MGI:5905209, RGD:2302982, RGD:13792537 NCBI chr19:43,193,264...43,215,281
Ensembl chr19:43,193,257...43,215,281
JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,869,301...17,881,762
Ensembl chr 9:17,869,124...17,880,706
JBrowse link
G Aarsd1 alanyl-tRNA synthetase domain containing 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:89,317,974...89,331,078
Ensembl chr10:89,317,975...89,331,078
JBrowse link
aminoacyl-tRNA metabolism involved in translational fidelity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:43,193,264...43,215,281
Ensembl chr19:43,193,257...43,215,281
JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:17,869,301...17,881,762
Ensembl chr 9:17,869,124...17,880,706
JBrowse link
G Aarsd1 alanyl-tRNA synthetase domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:89,317,974...89,331,078
Ensembl chr10:89,317,975...89,331,078
JBrowse link
G Dtd1 D-aminoacyl-tRNA deacylase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:138,770,573...138,931,544
Ensembl chr 3:138,770,574...138,931,549
JBrowse link
G Dtd2 D-aminoacyl-tRNA deacylase 2 ISO (PMID:29410408)
(MGI:MGI:6148359|PMID:29410408)
RGD PMID:29410408 MGI:MGI:6148359 NCBI chr 6:72,781,229...72,786,835
Ensembl chr 6:72,780,543...72,786,830
JBrowse link
G Iars1 isoleucyl-tRNA synthetase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:15,356,016...15,402,680
Ensembl chr17:15,355,529...15,402,649
JBrowse link
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:103,229,868...103,265,019
Ensembl chr13:103,231,387...103,264,906
JBrowse link
G Lars1 leucyl-tRNA synthetase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:36,524,013...36,579,471
Ensembl chr18:36,524,007...36,579,403
JBrowse link
G Lars2 leucyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:132,441,277...132,537,176
Ensembl chr 8:132,441,285...132,536,369
JBrowse link
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:14,541,646...14,562,733
Ensembl chr17:14,541,949...14,557,792
JBrowse link
G Prorsd1 prolyl-tRNA synthetase associated domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:113,938,061...113,940,330
Ensembl chr14:113,938,061...113,940,330
JBrowse link
G Tars2 threonyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:197,861,071...197,881,347
Ensembl chr 2:197,861,115...197,878,142
JBrowse link
G Vars1 valyl-tRNA synthetase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:4,993,539...5,008,259
Ensembl chr20:4,993,560...5,008,262
JBrowse link
G Vars2 valyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:3,588,462...3,599,514
Ensembl chr20:3,588,497...3,599,514
JBrowse link
arginyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,355,943...117,358,819
Ensembl chr 8:117,355,943...117,358,818
JBrowse link
G Rars1 arginyl-tRNA synthetase 1 IDA
IBA
ISO
PMID:21873635
(PMID:25288775)
(MGI:MGI:3055639|PMID:12060739)
RGD PMID:12060739, PMID:25288775, PMID:7082655, PMID:21873635 MGI:MGI:3055639, RGD:2303394, RGD:13792537 NCBI chr10:20,633,630...20,658,074
Ensembl chr10:20,633,632...20,658,100
JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:50,075,510...50,127,625
Ensembl chr 5:50,075,527...50,127,424
JBrowse link
asparaginyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nars1 asparaginyl-tRNA synthetase 1 ISO (PMID:9421509) RGD PMID:9421509 NCBI chr18:59,986,350...60,002,644
Ensembl chr18:59,986,360...60,002,569
JBrowse link
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:161,922,132...162,035,817
Ensembl chr 1:161,922,141...162,034,700
JBrowse link
aspartyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars1 aspartyl-tRNA synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:45,074,067...45,127,815
Ensembl chr13:45,074,072...45,127,815
JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:70,952,209...70,986,393
Ensembl chr 8:70,952,203...70,986,408
JBrowse link
cysteinyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cars cysteinyl-tRNA synthetase ISO
IBA
(PMID:10908348), (PMID:11347887), (PMID:17303165)
PMID:21873635
RGD PMID:10908348, PMID:11347887, PMID:17303165, PMID:21873635 RGD:13792537 NCBI chr 1:216,759,367...216,801,652
Ensembl chr 1:216,759,366...216,801,656
JBrowse link
G Cars2 cysteinyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:83,288,613...83,325,706
Ensembl chr16:83,288,664...83,325,699
JBrowse link
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
glutaminyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lars1 leucyl-tRNA synthetase 1 ISO (PMID:26869582) RGD PMID:26869582 NCBI chr18:36,524,013...36,579,471
Ensembl chr18:36,524,007...36,579,403
JBrowse link
G LOC100911132 glutamine--tRNA ligase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Qars1 glutaminyl-tRNA synthetase 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:24656866), (PMID:26869582)
UniProt
RGD
PMID:24656866, PMID:26869582, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:117,297,670...117,305,708
Ensembl chr 8:117,297,670...117,305,702
JBrowse link
glutaminyl-tRNAGln biosynthesis via transamidation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatb glutamyl-tRNA amidotransferase subunit B ISO
IBA
(PMID:19805282)
PMID:21873635
RGD PMID:19805282, PMID:21873635 RGD:13792537 NCBI chr 2:184,600,695...184,679,980
Ensembl chr 2:184,600,721...184,679,683
JBrowse link
G Gatc glutamyl-tRNA amidotransferase subunit C ISO
IBA
IEA
(PMID:19805282)
PMID:21873635
GO_REF:0000104
RGD
UniProt
PMID:19805282, PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr12:47,031,545...47,039,556
Ensembl chr12:46,989,951...47,039,542
Ensembl chr12:46,989,951...47,039,542
JBrowse link
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 ISO
IBA
(PMID:19805282)
PMID:21873635
RGD PMID:19805282, PMID:21873635 RGD:13792537 NCBI chr20:48,855,839...48,881,112
Ensembl chr20:48,855,914...48,881,119
JBrowse link
glutamyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial ISO
IBA
(PMID:19805282)
PMID:21873635
RGD PMID:19805282, PMID:21873635 RGD:13792537 NCBI chr 1:191,997,512...192,025,350
Ensembl chr 1:191,997,512...192,025,350
JBrowse link
G Eprs glutamyl-prolyl-tRNA synthetase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:103,300,911...103,371,651
Ensembl chr13:103,300,932...103,371,577
JBrowse link
glycyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gars glycyl-tRNA synthetase ISO MGI:MGI:3760297 (MGI:MGI:3849224|PMID:19470612) RGD PMID:19470612 MGI:MGI:3849224 NCBI chr 4:85,235,122...85,276,085
Ensembl chr 4:85,235,172...85,276,044
JBrowse link
histidyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hars1 histidyl-tRNA synthetase 1 ISO
IBA
(PMID:29235198)
PMID:21873635
RGD PMID:29235198, PMID:21873635 RGD:13792537 NCBI chr18:29,611,545...29,629,087
Ensembl chr18:29,611,547...29,629,087
JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial ISO
IBA
(PMID:21464306)
PMID:21873635
RGD PMID:21464306, PMID:21873635 RGD:13792537 NCBI chr18:29,629,203...29,638,460
Ensembl chr18:29,629,184...29,638,721
JBrowse link
isoleucyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Iars1 isoleucyl-tRNA synthetase 1 ISO
IBA
(MGI:MGI:3055639|PMID:12060739)
PMID:21873635
(PMID:8052601)
RGD PMID:8052601, PMID:12060739, PMID:21873635 MGI:MGI:3055639, RGD:13792537 NCBI chr17:15,356,016...15,402,680
Ensembl chr17:15,355,529...15,402,649
JBrowse link
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:103,229,868...103,265,019
Ensembl chr13:103,231,387...103,264,906
JBrowse link
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:14,541,646...14,562,733
Ensembl chr17:14,541,949...14,557,792
JBrowse link
leucyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lars1 leucyl-tRNA synthetase 1 ISO
IBA
(MGI:MGI:3055639|PMID:12060739)
PMID:21873635
RGD PMID:12060739, PMID:21873635 MGI:MGI:3055639, RGD:13792537 NCBI chr18:36,524,013...36,579,471
Ensembl chr18:36,524,007...36,579,403
JBrowse link
G Lars2 leucyl-tRNA synthetase 2, mitochondrial ISO
IBA
(PMID:10684970)
PMID:21873635
RGD PMID:10684970, PMID:21873635 RGD:13792537 NCBI chr 8:132,441,277...132,537,176
Ensembl chr 8:132,441,285...132,536,369
JBrowse link
lysyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kars lysyl-tRNA synthetase IDA
IBA
ISO
PMID:21873635
(PMID:10952987), (PMID:23159739), (PMID:9278442)
PMID:6315704
RGD PMID:9278442, PMID:10952987, PMID:23159739, PMID:7372681, PMID:21873635, PMID:6315704, PMID:7082655 RGD:2303393, RGD:13792537, RGD:12911009, RGD:2303394 NCBI chr19:44,212,205...44,231,209
Ensembl chr19:44,212,206...44,231,157
JBrowse link
methionyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911305 methionine--tRNA ligase, mitochondrial-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:61,823,441...61,826,357
Ensembl chr 9:61,823,531...61,825,291
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 ISO (MGI:MGI:3055639|PMID:12060739)
(PMID:11714285)
RGD PMID:11714285, PMID:12060739 MGI:MGI:3055639 NCBI chr 7:70,585,011...70,602,425
Ensembl chr 7:70,585,013...70,602,310
JBrowse link
G Mars2 methionyl-tRNA synthetase 2, mitochondrial ISO
IBA
(PMID:15274629)
PMID:21873635
RGD PMID:15274629, PMID:21873635 RGD:13792537 NCBI chr 9:64,434,814...64,437,730
Ensembl chr 9:64,434,904...64,436,664
Ensembl chr 9:64,434,904...64,436,664
JBrowse link
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars2 alanyl-tRNA synthetase 2, mitochondrial ISO
IEA
(PMID:21549344)
GO_REF:0000107
RGD
Ensembl
PMID:21549344 GO_REF:0000107 NCBI chr 9:17,869,301...17,881,762
Ensembl chr 9:17,869,124...17,880,706
JBrowse link
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) ISO
ISS
(PMID:23275545)
GO_REF:0000024
RGD
UniProt
PMID:23275545 GO_REF:0000024 NCBI chr13:78,857,638...78,885,464
Ensembl chr13:78,857,638...78,885,464
JBrowse link
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars2 seryl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:86,923,769...86,935,506
Ensembl chr 1:86,923,591...86,935,904
JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:29040705)
Ensembl
UniProt
RGD
PMID:29040705 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 ISO (PMID:11504732) RGD PMID:11504732 NCBI chr 4:138,855,497...138,869,217
Ensembl chr 4:138,855,641...138,869,217
JBrowse link
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21593607)
Ensembl
UniProt
RGD
PMID:21593607, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr10:51,478,378...51,501,167
Ensembl chr10:51,478,378...51,501,165
JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 IEA
ISO
ISS
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24549042, PMID:25925575, PMID:28888424, PMID:29040705 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Prorp protein only RNase P catalytic subunit ISO
ISS
(PMID:25953853)
GO_REF:0000024
RGD
UniProt
PMID:25953853 GO_REF:0000024 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO
ISS
(PMID:29040705)
GO_REF:0000024
RGD
UniProt
PMID:29040705 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 IEA
ISO
ISS
GO_REF:0000107
(PMID:25925575), (PMID:28888424)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25925575, PMID:28888424 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt5 tRNA methyltransferase 5 ISO
IBA
(PMID:26189817)
PMID:21873635
RGD PMID:26189817, PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 ISO MGI:MGI:5750452 (MGI:MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:MGI:5635958 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt10b tRNA methyltransferase 10B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,841,517...60,866,480
Ensembl chr 5:60,850,852...60,865,207
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO
IBA
ISS
(PMID:27132592)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27132592, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 ISO
IBA
SGD:S000003205 (MGI:MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635 MGI:MGI:2677576, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:201,170,363...201,256,115
Ensembl chr 2:201,172,312...201,255,703
JBrowse link
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yars2 tyrosyl-tRNA synthetase 2 ISO (PMID:20598274) RGD PMID:20598274 NCBI chr11:88,882,615...88,888,377
Ensembl chr11:88,882,616...88,888,377
JBrowse link
nuclear polyadenylation-dependent tRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
phenylalanyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial IEA
IBA
ISS
ISO
GO_REF:0000002
PMID:21873635
GO_REF:0000024
(PMID:10329163)
InterPro
UniProt
RGD
PMID:10329163, PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:13792537 NCBI chr17:29,006,981...29,438,906
Ensembl chr17:29,006,988...29,438,668
JBrowse link
G Farsa phenylalanyl-tRNA synthetase subunit alpha ISO
IBA
ISS
(PMID:20223217)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20223217, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:25,969,255...25,978,777
Ensembl chr19:25,969,255...25,978,776
JBrowse link
G Farsb phenylalanyl-tRNA synthetase subunit beta ISO
IBA
(PMID:20223217)
PMID:21873635
RGD PMID:20223217, PMID:21873635 RGD:13792537 NCBI chr 9:84,324,456...84,383,674
Ensembl chr 9:84,324,442...84,383,687
JBrowse link
prolyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062535.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:181,484,100...181,486,090 JBrowse link
G Eprs glutamyl-prolyl-tRNA synthetase ISO
IBA
(MGI:MGI:3055639|PMID:12060739)
PMID:21873635
(PMID:24100331)
RGD PMID:12060739, PMID:24100331, PMID:21873635 MGI:MGI:3055639, RGD:13792537 NCBI chr13:103,300,911...103,371,651
Ensembl chr13:103,300,932...103,371,577
JBrowse link
G Pars2 prolyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:126,254,090...126,259,204
Ensembl chr 5:126,254,142...126,259,200
JBrowse link
selenocysteinyl-tRNA(Sec) biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars1 seryl-tRNA synthetase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:211,219,743...211,235,475
Ensembl chr 2:211,219,750...211,235,467
JBrowse link
G Sars2 seryl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:86,923,769...86,935,506
Ensembl chr 1:86,923,591...86,935,904
JBrowse link
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:60,657,730...60,687,950
Ensembl chr14:60,657,686...60,687,958
JBrowse link
seryl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars1 seryl-tRNA synthetase 1 IEA
IBA
ISO
ISS
GO_REF:0000002
PMID:21873635
(PMID:24095058), (PMID:28236339)
GO_REF:0000024
InterPro
RGD
UniProt
PMID:24095058, PMID:28236339, PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:13792537 NCBI chr 2:211,219,743...211,235,475
Ensembl chr 2:211,219,750...211,235,467
JBrowse link
G Sars2 seryl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:86,923,769...86,935,506
Ensembl chr 1:86,923,591...86,935,904
JBrowse link
threonyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tars1 threonyl-tRNA synthetase 1 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:25824639)
(MGI:MGI:3055639|PMID:12060739), (MGI:MGI:6164765|PMID:29579307)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12060739, PMID:25824639, PMID:29579307, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3055639, MGI:MGI:6164765, RGD:13792537 NCBI chr 2:61,394,632...61,414,115
Ensembl chr 2:61,394,770...61,414,102
JBrowse link
G Tars2 threonyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:197,861,071...197,881,347
Ensembl chr 2:197,861,115...197,878,142
JBrowse link
G Tars3 threonyl-tRNA synthetase 3 ISO
IBA
(MGI:MGI:6164765|PMID:29579307)
PMID:21873635
RGD PMID:29579307, PMID:21873635 MGI:MGI:6164765, RGD:13792537 NCBI chr 1:126,523,169...126,559,493
Ensembl chr 1:126,523,169...126,559,489
JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Wdr4 WD repeat domain 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
JBrowse link
tRNA 3'-end processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptcd1 pentatricopeptide repeat domain 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:11,215,795...11,233,633
Ensembl chr12:11,215,886...11,233,633
JBrowse link
G Ssb small RNA binding exonuclease protection factor La ISO UniProtKB:P87058 (PMID:10983981) RGD PMID:10983981 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
tRNA 3'-terminal CCA addition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trnt1 tRNA nucleotidyl transferase 1 ISO (PMID:25193871) RGD PMID:25193871 NCBI chr 4:138,855,497...138,869,217
Ensembl chr 4:138,855,641...138,869,217
JBrowse link
tRNA 3'-trailer cleavage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:177,374,812...177,379,009
Ensembl chr 3:177,374,812...177,379,008
JBrowse link
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:69,706,522...69,723,869
Ensembl chr18:69,706,522...69,723,869
JBrowse link
tRNA 5'-end processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thg1l tRNA-histidine guanylyltransferase 1-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:31,043,647...31,052,092
Ensembl chr10:31,043,688...31,052,102
JBrowse link
tRNA 5'-leader removal term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr 7:73,270,403...73,298,209
Ensembl chr 7:73,270,455...73,298,239
JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit ISO
ISS
(PMID:16723659), (PMID:30454648)
GO_REF:0000024
RGD
UniProt
PMID:16723659, PMID:30454648 GO_REF:0000024 NCBI chr 1:94,661,127...94,669,461
Ensembl chr 1:94,661,128...94,669,461
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr12:47,138,346...47,143,152
Ensembl chr12:47,138,346...47,142,852
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr12:22,259,713...22,260,754
Ensembl chr12:22,259,713...22,260,754
JBrowse link
G Prorp protein only RNase P catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr15:18,625,963...18,636,157
Ensembl chr15:18,625,964...18,632,536
JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr20:2,515,541...2,517,471
Ensembl chr20:2,515,520...2,517,498
JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 ISO
IBA
ISS
(PMID:16723659), (PMID:30454648)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16723659, PMID:30454648, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:62,283,336...62,284,716
Ensembl chr 8:62,283,336...62,284,716
JBrowse link
G Rpp25l ribonuclease P/MRP subunit p25 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:58,096,037...58,097,577
Ensembl chr 5:58,096,213...58,097,577
JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 ISO (PMID:16723659), (PMID:30454648) RGD PMID:16723659, PMID:30454648 NCBI chr 1:254,697,247...254,720,093
Ensembl chr 1:254,697,247...254,720,087
JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 ISO
IBA
(PMID:30454648)
PMID:21873635
RGD PMID:30454648, PMID:21873635 RGD:13792537 NCBI chr17:78,915,450...78,919,144
Ensembl chr17:78,915,604...78,919,143
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 ISO
IBA
ISS
(PMID:30454648)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:30454648, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
G Ssb small RNA binding exonuclease protection factor La ISO UniProtKB:P87058 (PMID:10983981) RGD PMID:10983981 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
tRNA acetylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:93,658,119...93,698,136
Ensembl chr 3:93,658,117...93,698,136
JBrowse link
tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) ISO (PMID:15779907), (PMID:17384640) RGD PMID:15779907, PMID:17384640 NCBI chr13:78,857,638...78,885,464
Ensembl chr13:78,857,638...78,885,464
JBrowse link
G Yars2 tyrosyl-tRNA synthetase 2 ISO
IBA
(PMID:15779907), (PMID:15840810), (PMID:17997975)
PMID:21873635
RGD PMID:15779907, PMID:15840810, PMID:17997975, PMID:21873635 RGD:13792537 NCBI chr11:88,882,615...88,888,377
Ensembl chr11:88,882,616...88,888,377
JBrowse link
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial ISO (PMID:19805282) RGD PMID:19805282 NCBI chr 1:191,997,512...192,025,350
Ensembl chr 1:191,997,512...192,025,350
JBrowse link
tRNA aminoacylation for protein translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gars glycyl-tRNA synthetase ISO
ISS
(PMID:28675565)
GO_REF:0000024
RGD
UniProt
PMID:28675565 GO_REF:0000024 NCBI chr 4:85,235,122...85,276,085
Ensembl chr 4:85,235,172...85,276,044
JBrowse link
G LOC317588 hypothetical protein LOC317588 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:137,934,296...137,952,151
Ensembl chr  X:137,934,484...137,952,150
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,585,011...70,602,425
Ensembl chr 7:70,585,013...70,602,310
JBrowse link
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:161,922,132...162,035,817
Ensembl chr 1:161,922,141...162,034,700
JBrowse link
G Tars1 threonyl-tRNA synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:61,394,632...61,414,115
Ensembl chr 2:61,394,770...61,414,102
JBrowse link
G Tars2 threonyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:197,861,071...197,881,347
Ensembl chr 2:197,861,115...197,878,142
JBrowse link
G Tars3 threonyl-tRNA synthetase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:126,523,169...126,559,493
Ensembl chr 1:126,523,169...126,559,489
JBrowse link
G Vars1 valyl-tRNA synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,993,539...5,008,259
Ensembl chr20:4,993,560...5,008,262
JBrowse link
G Vars2 valyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,588,462...3,599,514
Ensembl chr20:3,588,497...3,599,514
JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO (PMID:26160102) RGD PMID:26160102 NCBI chr17:82,020,316...82,060,533
Ensembl chr17:82,022,490...82,060,123
JBrowse link
tRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit ISO (PMID:8918471) RGD PMID:8918471 NCBI chr 7:73,270,403...73,298,209
Ensembl chr 7:73,270,455...73,298,239
JBrowse link
G Slfn13 schlafen family member 13 IDA PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr10:70,326,157...70,343,024
Ensembl chr10:70,326,157...70,342,492
JBrowse link
tRNA demethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27745969) RGD PMID:27745969 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:109,972,018...109,979,113
Ensembl chr10:109,972,037...109,979,712
JBrowse link
G Dus2 dihydrouridine synthase 2 ISO
IBA
(PMID:26429968)
PMID:21873635
RGD PMID:26429968, PMID:21873635 RGD:13792537 NCBI chr19:37,990,374...38,033,590
Ensembl chr19:37,990,374...38,033,590
JBrowse link
G Dus3l dihydrouridine synthase 3-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:10,289,440...10,294,213
Ensembl chr 9:10,289,446...10,293,980
JBrowse link
G Dus4l dihydrouridine synthase 4-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:50,925,987...50,943,546
Ensembl chr 6:50,928,397...50,943,488
JBrowse link
tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:23,913,830...23,933,191
Ensembl chr 7:23,913,830...23,933,191
JBrowse link
tRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052486.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 3:57,257,394...57,646,610 JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO (MGI:MGI:4461096|PMID:20123966)
(PMID:20308323), (PMID:31079898)
RGD PMID:20123966, PMID:20308323, PMID:31079898 MGI:MGI:4461096 NCBI chr 6:18,877,885...18,952,773
Ensembl chr 6:18,877,907...18,949,393
JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase ISS
ISO
GO_REF:0000024
(PMID:28119416), (PMID:31919512)
UniProt
RGD
PMID:28119416, PMID:31919512 GO_REF:0000024 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,993,685...15,006,010
Ensembl chr  X:14,994,016...15,002,074
JBrowse link
G Gtpbp3 GTP binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,897,135...19,902,226
Ensembl chr16:19,896,986...19,902,245
JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,089,646...113,091,770
Ensembl chr 3:113,089,647...113,091,770
JBrowse link
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,244,466...136,250,496
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Mettl1 methyltransferase like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Mettl2 methyltransferase like 2 ISO MGI:MGI:5903740 (MGI:MGI:5903638|PMID:28655767)
(PMID:28655767)
RGD PMID:28655767 MGI:MGI:5903638 NCBI chr10:93,353,944...93,367,769
Ensembl chr10:93,354,003...93,379,470
JBrowse link
G Mettl6 methyltransferase like 6 ISO MGI:MGI:5903741 (MGI:MGI:5903638|PMID:28655767)
(PMID:28655767)
RGD PMID:28655767 MGI:MGI:5903638 NCBI chr16:7,559,964...7,588,841
Ensembl chr16:7,573,750...7,588,841
JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 ISO
IBA
(PMID:17071714), (PMID:31287866)
(MGI:MGI:5304206|PMID:22144916), (MGI:MGI:6194005|PMID:22885326), (MGI:MGI:6368097|PMID:31287866), (MGI:MGI:6368099|PMID:23871666), (MGI:MGI:6368109|PMID:31276587)
PMID:21873635
RGD PMID:17071714, PMID:22144916, PMID:22885326, PMID:23871666, PMID:31276587, PMID:31287866, PMID:21873635 MGI:MGI:5304206, MGI:MGI:6194005, MGI:MGI:6368097, MGI:MGI:6368099, MGI:MGI:6368109, RGD:13792537 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO (PMID:28531330) RGD PMID:28531330 NCBI chr17:82,020,316...82,060,533
Ensembl chr17:82,022,490...82,060,123
JBrowse link
G Tarbp1 TAR (HIV-1) RNA binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,331,399...59,384,807
Ensembl chr19:59,333,184...59,384,297
JBrowse link
G Thada THADA, armadillo repeat containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:7,423,555...7,741,431
Ensembl chr 6:7,423,520...7,741,414
JBrowse link
G Thumpd2 THUMP domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:3,743,080...3,794,512
Ensembl chr 6:3,743,074...3,794,501
JBrowse link
G Thumpd3 THUMP domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:144,985,850...145,010,164
Ensembl chr 4:144,985,880...145,008,831
JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 ISO
ISS
(PMID:16424344)
MGI:MGI:3695409 (MGI:MGI:3612372|PMID:16424344), (MGI:MGI:6194005|PMID:22885326)
GO_REF:0000024
RGD
UniProt
PMID:16424344, PMID:22885326 GO_REF:0000024, MGI:MGI:3612372, MGI:MGI:6194005 NCBI chr17:80,824,652...80,859,585
Ensembl chr17:80,826,846...80,860,195
JBrowse link
G Trmo tRNA methyltransferase O ISO
ISS
(PMID:25063302)
GO_REF:0000024
RGD
UniProt
PMID:25063302 GO_REF:0000024 NCBI chr 5:61,992,507...62,001,065
Ensembl chr 5:61,990,328...62,001,196
JBrowse link
G Trmt10a tRNA methyltransferase 10A ISO
ISS
(PMID:25053765)
GO_REF:0000024
RGD
UniProt
PMID:25053765 GO_REF:0000024 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt10b tRNA methyltransferase 10B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:60,841,517...60,866,480
Ensembl chr 5:60,850,852...60,865,207
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:29,432,109...29,576,079
Ensembl chr 1:29,432,152...29,487,473
JBrowse link
G Trmt112 tRNA methyltransferase subunit 11-2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,167,927...222,168,780
Ensembl chr 1:222,167,927...222,168,776
JBrowse link
G Trmt12 tRNA methyltransferase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:98,748,547...98,750,173
Ensembl chr 7:98,748,547...98,750,171
JBrowse link
G Trmt13 tRNA methyltransferase 13 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:219,615,665...219,628,824
Ensembl chr 2:219,615,420...219,628,997
JBrowse link
G Trmt44 tRNA methyltransferase 44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,361,490...80,379,408
Ensembl chr14:80,361,294...80,383,138
JBrowse link
G Trmt5 tRNA methyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
G Trmt6 tRNA methyltransferase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:125,458,692...125,470,413
Ensembl chr 3:125,458,692...125,470,413
JBrowse link
G Trmt61a tRNA methyltransferase 61A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,150,768...136,156,785
Ensembl chr 6:136,150,785...136,250,752
JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:59,316,145...59,368,559
Ensembl chr16:59,317,699...59,366,824
JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:260,861,825...260,884,270
Ensembl chr 2:260,861,790...260,884,449
JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 ISO
IBA
MGI:MGI:5301443 (MGI:MGI:5297757|PMID:21841312)
PMID:21873635
RGD PMID:21841312, PMID:21873635 MGI:MGI:5297757, RGD:13792537 NCBI chr17:36,451,031...37,157,882
Ensembl chr17:36,451,058...37,295,069
JBrowse link
tRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005588.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:189,457,583...189,460,844 JBrowse link
G AABR07005618.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:190,368,884...190,370,499 JBrowse link
G Aars1 alanyl-tRNA synthetase 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:3640843|PMID:16906134), (MGI:MGI:5609717|PMID:25422440), (MGI:MGI:6159204|PMID:29769718)
UniProt
RGD
PMID:16906134, PMID:25422440, PMID:29769718, PMID:21873635 GO_REF:0000024, MGI:MGI:3640843, MGI:MGI:5609717, MGI:MGI:6159204, RGD:13792537 NCBI chr19:43,193,264...43,215,281
Ensembl chr19:43,193,257...43,215,281
JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,869,301...17,881,762
Ensembl chr 9:17,869,124...17,880,706
JBrowse link
G Ankrd16 ankyrin repeat domain 16 ISS
ISO
GO_REF:0000024
(MGI:MGI:6159204|PMID:29769718)
UniProt
RGD
PMID:29769718 GO_REF:0000024, MGI:MGI:6159204 NCBI chr17:70,384,883...70,398,089
Ensembl chr17:70,386,707...70,398,769
JBrowse link
G Dtwd1 DTW domain containing 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31804502)
UniProt
Ensembl
RGD
PMID:31804502 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:118,427,790...118,443,003
Ensembl chr 3:118,430,511...118,442,098
JBrowse link
G Dtwd2 DTW domain containing 2 ISO (PMID:31804502) RGD PMID:31804502 NCBI chr18:43,857,371...43,945,732
Ensembl chr18:43,857,970...43,945,273
JBrowse link
G Mettl1 methyltransferase like 1 ISO (PMID:12403464), (PMID:15861136) RGD PMID:12403464, PMID:15861136 NCBI chr 7:70,328,470...70,333,045
Ensembl chr 7:70,328,391...70,333,166
JBrowse link
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,447,057...22,454,328
Ensembl chr 8:22,446,661...22,454,439
JBrowse link
G RGD1311345 similar to CG9752-PA IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,683,152...6,690,724
Ensembl chr17:6,683,152...6,690,723
JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:31,043,647...31,052,092
Ensembl chr10:31,043,688...31,052,102
JBrowse link
G Trit1 tRNA isopentenyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:140,711,943...140,756,893
Ensembl chr 5:140,712,583...140,756,085
JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:278,311,362...278,418,347
Ensembl chr 1:278,311,244...278,418,336
JBrowse link
G Wdr4 WD repeat domain 4 ISO (PMID:15861136) RGD PMID:15861136 NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A ISO
IEA
(PMID:32392304)
GO_REF:0000107
RGD
Ensembl
PMID:32392304 GO_REF:0000107 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt5 tRNA methyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
tRNA N2-guanine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt1 tRNA methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:25,798,262...25,813,458
Ensembl chr19:25,803,262...25,813,467
JBrowse link
G Trmt1l tRNA methyltransferase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:68,785,889...68,819,018
Ensembl chr13:68,785,827...68,818,990
JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:14,993,685...15,006,010
Ensembl chr  X:14,994,016...15,002,074
JBrowse link
tRNA processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat1 adenosine deaminase, tRNA-specific 1 ISO (PMID:10430867) RGD PMID:10430867 NCBI chr19:44,172,496...44,212,147
Ensembl chr19:44,187,331...44,211,208
JBrowse link
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial ISO
ISS
(PMID:10329163)
GO_REF:0000024
RGD
UniProt
PMID:10329163 GO_REF:0000024 NCBI chr17:29,006,981...29,438,906
Ensembl chr17:29,006,988...29,438,668
JBrowse link
G LOC685619 similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2) IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:162,164,354...162,168,272
Ensembl chr 3:162,165,077...162,167,598
JBrowse link
G Pop1 POP1 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:73,270,403...73,298,209
Ensembl chr 7:73,270,455...73,298,239
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit ISO
IBA
(MGI:MGI:2149119|PMID:11413139)
PMID:21873635
RGD PMID:11413139, PMID:21873635 MGI:MGI:2149119, RGD:13792537 NCBI chr12:47,138,346...47,143,152
Ensembl chr12:47,138,346...47,142,852
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,259,713...22,260,754
Ensembl chr12:22,259,713...22,260,754
JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,515,541...2,517,471
Ensembl chr20:2,515,520...2,517,498
JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:254,697,247...254,720,093
Ensembl chr 1:254,697,247...254,720,087
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:36,467,706...36,477,190
Ensembl chr 8:36,467,706...36,477,189
JBrowse link
G Ssb small RNA binding exonuclease protection factor La IMP
ISO
(PMID:17308035) RGD PMID:17308035, PMID:12049746 RGD:737671 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like ISO
IBA
ISS
(PMID:21059936)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21059936, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:31,043,647...31,052,092
Ensembl chr10:31,043,688...31,052,102
JBrowse link
G Tp53rk TP53 regulating kinase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:163,552,166...163,555,925
Ensembl chr 3:163,552,166...163,555,596
JBrowse link
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:126,756,140...126,772,749
Ensembl chr 7:126,756,151...126,772,749
JBrowse link
G Trpt1 tRNA phosphotransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,250,995...222,255,994
Ensembl chr 1:222,250,995...222,255,994
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:8,338,479...8,348,746
Ensembl chr 3:8,338,484...8,348,746
JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 ISO
IBA
(MGI:MGI:1928307|PMID:11085940), (MGI:MGI:1928672|PMID:10094309), (MGI:MGI:2672074|PMID:11027153), (MGI:MGI:3053242|PMID:15327771)
PMID:21873635
RGD PMID:10094309, PMID:11027153, PMID:11085940, PMID:15327771, PMID:21873635 MGI:MGI:1928307, MGI:MGI:1928672, MGI:MGI:2672074, MGI:MGI:3053242, RGD:13792537 NCBI chr12:51,936,721...51,945,930
Ensembl chr12:51,937,175...51,945,928
JBrowse link
G Pus10 pseudouridine synthase 10 ISO
IBA
(PMID:30530625), (PMID:31819270)
PMID:21873635
RGD PMID:30530625, PMID:31819270, PMID:21873635 RGD:13792537 NCBI chr14:108,411,941...108,479,696
Ensembl chr14:108,412,152...108,479,781
JBrowse link
G Pus3 pseudouridine synthase 3 ISO
IBA
(MGI:MGI:2672074|PMID:11027153)
PMID:21873635
(PMID:27055666)
RGD PMID:11027153, PMID:27055666, PMID:21873635 MGI:MGI:2672074, RGD:13792537 NCBI chr 8:36,760,874...36,769,167
Ensembl chr 8:36,766,977...36,769,162
JBrowse link
G Pus7 pseudouridine synthase 7 ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Pusl1 pseudouridine synthase like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,326,755...173,339,934
Ensembl chr 5:173,336,034...173,340,026
JBrowse link
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:17495927), (PMID:24766809), (PMID:24766810)
UniProt
RGD
PMID:17495927, PMID:24766809, PMID:24766810, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Ddx1 DEAD-box helicase 1 ISO
ISS
(PMID:24870230)
GO_REF:0000024
RGD
UniProt
PMID:24870230 GO_REF:0000024 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:21311021), (PMID:24870230)
UniProt
RGD
PMID:21311021, PMID:24870230, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:23,913,830...23,933,191
Ensembl chr 7:23,913,830...23,933,191
JBrowse link
G Rtraf RNA transcription, translation and transport factor ISO (PMID:24870230) RGD PMID:24870230 NCBI chr15:4,882,925...4,893,890
Ensembl chr15:4,882,947...4,893,919
JBrowse link
G Trpt1 tRNA phosphotransferase 1 ISO
IBA
(MGI:MGI:1314907|PMID:9826666)
PMID:21873635
RGD PMID:9826666, PMID:21873635 MGI:MGI:1314907, RGD:13792537 NCBI chr 1:222,250,995...222,255,994
Ensembl chr 1:222,250,995...222,255,994
JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:69,765,093...69,781,019
Ensembl chr13:69,765,091...69,781,019
JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 ISO (PMID:17495927) RGD PMID:17495927 NCBI chr 4:147,455,506...147,490,869
Ensembl chr 4:147,455,533...147,490,733
JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 ISO (PMID:17495927) RGD PMID:17495927 NCBI chr10:104,358,401...104,366,926
Ensembl chr10:104,359,342...104,366,926
JBrowse link
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand ISO
IBA
(PMID:24870230)
PMID:21873635
RGD PMID:24870230, PMID:21873635 RGD:13792537 NCBI chr 5:147,535,584...147,547,252
Ensembl chr 5:147,535,525...147,547,047
JBrowse link
tRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun2 NOP2/Sun RNA methyltransferase 2 ISO (MGI:MGI:6194005|PMID:22885326) RGD PMID:22885326 MGI:MGI:6194005 NCBI chr 1:36,295,650...36,319,906
Ensembl chr 1:36,295,650...36,319,966
JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6194005|PMID:22885326)
UniProt
RGD
PMID:22885326 GO_REF:0000024, MGI:MGI:6194005 NCBI chr17:80,824,652...80,859,585
Ensembl chr17:80,826,846...80,860,195
JBrowse link
tRNA thio-modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISS
IEA
GO_REF:0000024
GO_REF:0000104
UniProt GO_REF:0000024, GO_REF:0000104 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Urm1 ubiquitin related modifier 1 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:8,389,024...8,405,868
Ensembl chr 3:8,389,024...8,405,868
JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osgep O-sialoglycoprotein endopeptidase ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr15:27,842,447...27,849,866
Ensembl chr15:27,842,422...27,849,974
JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:53,084,042...53,098,029
Ensembl chr 9:53,084,045...53,097,979
JBrowse link
G Tprkb Tp53rk binding protein ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr 4:117,589,527...117,604,481
Ensembl chr 4:117,780,533...117,785,941
Ensembl chr 4:117,780,533...117,785,941
JBrowse link
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat2 adenosine deaminase, tRNA-specific 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:7,726,447...7,743,112
Ensembl chr 1:7,726,529...7,742,484
JBrowse link
G Adat3 adenosine deaminase, tRNA-specific 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,977,285...11,981,814 JBrowse link
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator complex protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:73,503,406...73,552,798
Ensembl chr 5:73,503,407...73,552,798
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:48,942,866...49,005,074
Ensembl chr15:48,942,871...49,005,058
JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) RGD PMID:27214402, PMID:27356879, PMID:27497299 NCBI chr11:38,535,971...38,590,274
Ensembl chr11:38,536,165...38,590,107
JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
tRNA wobble position uridine thiolation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:126,756,140...126,772,749
Ensembl chr 7:126,756,151...126,772,749
JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053185.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:95,838,262...95,954,983 JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO
IBA
(MGI:MGI:5607402|PMID:20583019)
PMID:21873635
(PMID:21285950), (PMID:31079898)
RGD PMID:20583019, PMID:21285950, PMID:31079898, PMID:21873635 MGI:MGI:5607402, RGD:13792537 NCBI chr 6:18,877,885...18,952,773
Ensembl chr 6:18,877,907...18,949,393
JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:99,599,608...99,605,412
Ensembl chr 1:99,599,620...99,605,412
JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISS
IEA
GO_REF:0000024
GO_REF:0000104
UniProt GO_REF:0000024, GO_REF:0000104 NCBI chr19:55,300,531...55,305,543
Ensembl chr19:55,300,395...55,305,702
JBrowse link
G Dph3 diphthamide biosynthesis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:8,202,048...8,207,492
Ensembl chr16:8,202,048...8,207,464
JBrowse link
G Elp1 elongator complex protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:73,503,406...73,552,798
Ensembl chr 5:73,503,407...73,552,798
JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:16,544,515...16,581,086
Ensembl chr18:16,544,508...16,581,116
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 ISO (PMID:29415125) RGD PMID:29415125 NCBI chr15:48,942,866...49,005,074
Ensembl chr15:48,942,871...49,005,058
JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:56,578,980...56,590,706
Ensembl chr10:56,578,985...56,591,364
JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:118,525,770...118,541,074
Ensembl chr 8:118,525,682...118,541,073
JBrowse link
G Gtpbp3 GTP binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,897,135...19,902,226
Ensembl chr16:19,896,986...19,902,245
JBrowse link
G Kti12 KTI12 chromatin associated homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:128,464,035...128,465,557 JBrowse link
G LOC365839 similar to elongation protein 4 homolog IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:186,630,203...186,631,703
Ensembl chr 2:186,630,278...186,631,633
JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:164,986,421...164,988,381
Ensembl chr 3:164,986,421...164,988,369
JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 ISO
IBA
SGD:S000003205 (MGI:MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635 MGI:MGI:2677576, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:59,316,145...59,368,559
Ensembl chr16:59,317,699...59,366,824
JBrowse link
G Urm1 ubiquitin related modifier 1 ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:8,389,024...8,405,868
Ensembl chr 3:8,389,024...8,405,868
JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 ISO
IEA
(PMID:20354154)
GO_REF:0000104
(MGI:MGI:3850292|PMID:19414587)
RGD
UniProt
PMID:19414587, PMID:20354154 GO_REF:0000104, MGI:MGI:3850292 NCBI chr 8:22,447,057...22,454,328
Ensembl chr 8:22,446,661...22,454,439
JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 ISO
IBA
(PMID:20354154)
PMID:21873635
(MGI:MGI:3850292|PMID:19414587)
RGD PMID:19414587, PMID:20354154, PMID:21873635 MGI:MGI:3850292, RGD:13792537 NCBI chr11:61,748,822...61,779,631
Ensembl chr11:61,748,878...61,779,631
JBrowse link
G RGD1311345 similar to CG9752-PA IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,683,152...6,690,724
Ensembl chr17:6,683,152...6,690,723
JBrowse link
tRNA-type intron splice site recognition and cleavage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsen2 tRNA splicing endonuclease subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,455,506...147,490,869
Ensembl chr 4:147,455,533...147,490,733
JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,023,924...64,031,756
Ensembl chr 1:64,024,240...64,030,175
Ensembl chr 1:64,024,240...64,030,175
JBrowse link
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,092,224...64,100,061
Ensembl chr 1:64,092,226...64,099,277
JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,358,401...104,366,926
Ensembl chr10:104,359,342...104,366,926
JBrowse link
tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wars1 tryptophanyl-tRNA synthetase 1 IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(MGI:MGI:3055639|PMID:12060739), (MGI:MGI:4414690|PMID:19941862)
InterPro
RGD
PMID:12060739, PMID:19941862, PMID:21873635 GO_REF:0000002, MGI:MGI:3055639, MGI:MGI:4414690, RGD:13792537 NCBI chr 6:132,771,026...132,802,262
Ensembl chr 6:132,771,021...132,802,210
JBrowse link
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:201,170,363...201,256,115
Ensembl chr 2:201,172,312...201,255,703
JBrowse link
tyrosyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yars1 tyrosyl-tRNA synthetase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:147,375,350...147,403,578
Ensembl chr 5:147,375,350...147,403,571
JBrowse link
valyl-tRNA aminoacylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vars1 valyl-tRNA synthetase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,993,539...5,008,259
Ensembl chr20:4,993,560...5,008,262
JBrowse link
G Vars2 valyl-tRNA synthetase 2, mitochondrial IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:3,588,462...3,599,514
Ensembl chr20:3,588,497...3,599,514
JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcmt2 leucine carboxyl methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,089,646...113,091,770
Ensembl chr 3:113,089,647...113,091,770
JBrowse link
G Tyw1 tRNA-yW synthesizing protein 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:29,824,990...29,919,240
Ensembl chr12:29,824,981...29,919,320
JBrowse link
G Tyw5 tRNA-yW synthesizing protein 5 ISO
IBA
(PMID:20739293), (PMID:20972222)
PMID:21873635
RGD PMID:20739293, PMID:20972222, PMID:21873635 RGD:13792537 NCBI chr 9:64,077,841...64,096,265
Ensembl chr 9:64,077,845...64,096,265
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          nucleic acid metabolic process 4980
            RNA metabolic process 4470
              ncRNA metabolic process 523
                tRNA metabolic process 176
                  aminoacyl-tRNA metabolism involved in translational fidelity 14
                  negative regulation of tRNA metabolic process + 2
                  positive regulation of tRNA metabolic process + 0
                  regulation of tRNA metabolic process + 2
                  selenocysteinyl-tRNA(Sec) biosynthetic process 3
                  tRNA aminoacylation + 48
                  tRNA catabolic process + 10
                  tRNA end turnover 0
                  tRNA processing + 120
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                ncRNA metabolic process 523
                  tRNA metabolic process 176
                    aminoacyl-tRNA metabolism involved in translational fidelity 14
                    negative regulation of tRNA metabolic process + 2
                    positive regulation of tRNA metabolic process + 0
                    regulation of tRNA metabolic process + 2
                    selenocysteinyl-tRNA(Sec) biosynthetic process 3
                    tRNA aminoacylation + 48
                    tRNA catabolic process + 10
                    tRNA end turnover 0
                    tRNA processing + 120
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.