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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA processing
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Accession:GO:0006397 term browser browse the term
Definition:Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Synonyms:related_synonym: mRNA maturation

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mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:5,088,260...5,123,735
Ensembl chrNW_004936596:5,088,361...5,123,649 		JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936741:1,729,707...1,756,108
Ensembl chrNW_004936741:1,729,679...1,757,419 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936673:922,393...1,032,572
Ensembl chrNW_004936673:922,341...1,033,307 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936490:15,251,132...15,278,264
Ensembl chrNW_004936490:15,251,110...15,278,732 		JBrowse link
G Cdc5l cell division cycle 5 like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936476:15,647,470...15,698,095
Ensembl chrNW_004936476:15,648,678...15,698,106 		JBrowse link
G Cdk12 cyclin dependent kinase 12 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:14,674,783...14,759,433
Ensembl chrNW_004936490:14,674,800...14,738,818 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936562:1,699,774...1,785,285
Ensembl chrNW_004936562:1,753,088...1,785,310 		JBrowse link
G Celf2 CUGBP Elav-like family member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:3,904,726...4,401,560
Ensembl chrNW_004936484:3,904,720...4,399,567 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936580:1,897,694...1,911,817
Ensembl chrNW_004936580:1,899,877...1,911,348 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:546,250...608,061
Ensembl chrNW_004936880:546,236...608,080 		JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:4,870,126...4,873,158
Ensembl chrNW_004936581:4,869,686...4,873,217 		JBrowse link
G Cmtr1 cap methyltransferase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936476:21,987,013...22,035,708
Ensembl chrNW_004936476:21,988,329...22,035,766 		JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936676:1,401,428...1,474,167
Ensembl chrNW_004936676:1,408,048...1,502,519 		JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936733:367,082...397,242
Ensembl chrNW_004936733:367,109...397,242 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936750:1,699,738...1,715,993
Ensembl chrNW_004936750:1,699,521...1,719,423 		JBrowse link
G Cpsf4l cleavage and polyadenylation specific factor 4 like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936655:977,413...985,067
Ensembl chrNW_004936655:977,469...983,241 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736 		JBrowse link
G Cwc15 CWC15 spliceosome associated protein homolog involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936674:76,022...83,110
Ensembl chrNW_004936674:76,016...83,225 		JBrowse link
G Cwc25 CWC25 spliceosome associated protein homolog involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:14,201,851...14,226,724
Ensembl chrNW_004936490:14,202,679...14,226,704 		JBrowse link
G Dbr1 debranching RNA lariats 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936540:504,638...515,913
Ensembl chrNW_004936540:505,619...515,964 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936572:5,861,391...5,899,757
Ensembl chrNW_004936572:5,860,639...5,899,804 		JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936493:14,884,532...14,918,621
Ensembl chrNW_004936493:14,884,442...14,918,823 		JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936837:324,244...341,667
Ensembl chrNW_004936837:324,243...341,713 		JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936541:85,273...122,161
Ensembl chrNW_004936541:85,252...123,040 		JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936541:4,613,197...4,705,911
Ensembl chrNW_004936541:4,617,555...4,705,866 		JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:8,332,507...8,350,176
Ensembl chrNW_004936501:8,332,601...8,350,176 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936482:16,126,608...16,194,729
Ensembl chrNW_004936482:16,126,536...16,193,962 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936494:12,717,358...12,737,019
Ensembl chrNW_004936494:12,717,268...12,740,193 		JBrowse link
G Gpatch1 G-patch domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936570:2,704,848...2,754,256
Ensembl chrNW_004936570:2,705,096...2,753,880 		JBrowse link
G Gpkow G-patch domain and KOW motifs involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936721:1,013,776...1,031,018
Ensembl chrNW_004936721:1,011,492...1,031,440 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:2557628) HGNC-UCL PMID:2557628 NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936880:368,041...425,967 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579 		JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936508:12,653,861...12,680,816
Ensembl chrNW_004936508:12,654,190...12,680,797 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936513:10,762,417...10,779,641
Ensembl chrNW_004936513:10,762,398...10,779,374 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:15,088,815...15,131,048
Ensembl chrNW_004936474:15,088,816...15,118,310 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936476:2,469,396...3,001,997
Ensembl chrNW_004936476:2,469,349...3,000,993 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 ISO RGD PMID:11118435 RGD:632715 NCBI chrNW_004936470:14,232,114...14,403,910
Ensembl chrNW_004936470:14,239,841...14,403,916 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:3,764,401...3,774,492
Ensembl chrNW_004936588:3,766,332...3,773,872 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936563:3,455,205...3,474,955
Ensembl chrNW_004936563:3,455,045...3,475,417 		JBrowse link
G LOC101959054 TAR DNA-binding protein 43-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936539:6,025,651...6,027,695 JBrowse link
G LOC101960245 U5 small nuclear ribonucleoprotein 200 kDa helicase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936744:365,974...393,264
Ensembl chrNW_004936744:366,303...393,229 		JBrowse link
G LOC101965836 survival motor neuron protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936549:4,968,112...4,995,131 JBrowse link
G LOC101966736 putative RNA-binding protein Luc7-like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936592:3,631,849...3,703,567
Ensembl chrNW_004936592:3,631,864...3,705,292 		JBrowse link
G LOC101967165 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004936927:232,353...232,857 JBrowse link
G LOC101972133 zinc finger CCHC-type and RNA-binding motif-containing protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936615:61,422...69,466 JBrowse link
G LOC101972750 pinin-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936895:575,584...578,007 JBrowse link
G LOC101973962 small nuclear ribonucleoprotein E involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936715:1,359,528...1,359,972 JBrowse link
G LOC110597639 small nuclear ribonucleoprotein G-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936482:7,766,607...7,766,869 JBrowse link
G LOC110598504 small nuclear ribonucleoprotein G-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936471:37,088,095...37,088,504 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936710:1,546,027...1,551,685
Ensembl chrNW_004936710:1,545,790...1,552,394 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936727:1,746,072...1,751,944
Ensembl chrNW_004936727:1,745,942...1,751,959 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936602:140,014...147,000
Ensembl chrNW_004936602:140,004...147,035 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936596:2,903,363...2,916,629
Ensembl chrNW_004936596:2,903,358...2,916,629 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936478:8,541,293...8,545,280
Ensembl chrNW_004936478:8,540,330...8,545,348 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936535:3,089,778...3,103,342
Ensembl chrNW_004936535:3,089,779...3,103,310 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936589:1,107,534...1,113,439
Ensembl chrNW_004936589:1,105,341...1,113,452 		JBrowse link
G Luc7l LUC7 like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936501:687,352...722,720
Ensembl chrNW_004936501:687,036...722,919 		JBrowse link
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:10,980,398...11,011,671
Ensembl chrNW_004936490:10,976,147...11,011,676 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5527005|PMID:24209618) UniProt PMID:24209618 MGI:5527005 NCBI chrNW_004936880:646,835...661,312
Ensembl chrNW_004936880:644,079...661,544 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:8,739,992...8,759,165
Ensembl chrNW_004936475:8,741,821...8,759,223 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:42,628,890...42,670,311
Ensembl chrNW_004936470:42,628,667...42,643,347 		JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936646:719,821...737,284
Ensembl chrNW_004936646:720,393...736,467 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936472:23,297,679...23,434,107
Ensembl chrNW_004936472:23,297,847...23,431,982 		JBrowse link
G Papola poly(A) polymerase alpha involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936604:770,050...833,950
Ensembl chrNW_004936604:770,054...834,609 		JBrowse link
G Papolg poly(A) polymerase gamma involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936491:6,285,209...6,320,646
Ensembl chrNW_004936491:6,285,206...6,322,668 		JBrowse link
G Phrf1 PHD and ring finger domains 1 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004936888:418,089...445,032
Ensembl chrNW_004936888:418,042...448,434 		JBrowse link
G Pnn pinin, desmosome associated protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936494:12,762,175...12,769,986 JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,750,015...2,765,914
Ensembl chrNW_004936659:2,750,537...2,765,753 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,353,905...1,464,636
Ensembl chrNW_004936608:1,353,897...1,464,636 		JBrowse link
G Prmt9 protein arginine methyltransferase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:1,811,376...1,855,636
Ensembl chrNW_004936535:1,811,360...1,859,288 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936613:364,492...401,402
Ensembl chrNW_004936613:364,462...401,402 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936580:604,709...632,788
Ensembl chrNW_004936580:605,138...633,104 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936994:239,688...252,269
Ensembl chrNW_004936994:239,682...252,317 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936522:8,540,839...8,580,604
Ensembl chrNW_004936522:8,562,738...8,580,956 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936704:272,998...282,189
Ensembl chrNW_004936704:273,282...281,010 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936538:7,780,022...7,814,575
Ensembl chrNW_004936538:7,780,022...7,814,575 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:16177139 GO_REF:0000002 GO_REF:0000043 RGD:10045980 NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936537:2,676,920...2,748,568
Ensembl chrNW_004936537:2,676,130...2,747,524 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936559:1,091,575...1,186,452
Ensembl chrNW_004936559:1,091,494...1,186,440 		JBrowse link
G Puf60 poly(U) binding splicing factor 60 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:8,336,852...8,348,335
Ensembl chrNW_004936470:8,336,390...8,348,609 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISO
IEA		 RGD
UniProt		 PMID:21253564 GO_REF:0000043 RGD:10045996 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983 		JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936530:5,259,612...6,843,668
Ensembl chrNW_004936530:6,306,877...6,845,073 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936492:4,624,013...4,826,715
Ensembl chrNW_004936492:4,645,167...4,821,291 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:8,457,469...8,478,030
Ensembl chrNW_004936484:8,457,462...8,478,309 		JBrowse link
G Rbm23 RNA binding motif protein 23 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936722:1,389,534...1,402,487
Ensembl chrNW_004936722:1,397,697...1,401,372 		JBrowse link
G Rbm25 RNA binding motif protein 25 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936488:2,395,451...2,458,367
Ensembl chrNW_004936488:2,395,467...2,458,367 		JBrowse link
G Rbm26 RNA binding motif protein 26 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936511:2,175,192...2,252,955
Ensembl chrNW_004936511:2,175,374...2,249,195 		JBrowse link
G Rbm27 RNA binding motif protein 27 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936504:8,401,186...8,481,986
Ensembl chrNW_004936504:8,400,445...8,482,011 		JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936561:5,099,052...5,149,947
Ensembl chrNW_004936561:5,099,580...5,128,134 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936529:1,639,919...1,672,143
Ensembl chrNW_004936529:1,639,880...1,672,282 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936867:666,208...667,851
Ensembl chrNW_004936867:666,199...667,828 		JBrowse link
G Rbmx RNA binding motif protein X-linked involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936513:10,429,862...10,442,509
Ensembl chrNW_004936513:10,429,824...10,437,108 		JBrowse link
G Rnasel ribonuclease L involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936481:7,165,400...7,177,342
Ensembl chrNW_004936481:7,165,353...7,177,538 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936510:3,186,552...3,405,862
Ensembl chrNW_004936510:3,186,506...3,406,159 		JBrowse link
G Rnmt RNA guanine-7 methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936626:3,132,781...3,156,252
Ensembl chrNW_004936626:3,132,772...3,153,920 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936471:4,034,088...4,038,746
Ensembl chrNW_004936471:4,034,001...4,039,137 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936572:6,013,920...6,027,023
Ensembl chrNW_004936572:6,013,582...6,026,837 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936599:3,577,552...3,588,825
Ensembl chrNW_004936599:3,577,480...3,588,706 		JBrowse link
G Scaf1 SR-related CTD associated factor 1 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004936664:3,462,063...3,476,743
Ensembl chrNW_004936664:3,464,749...3,476,491 		JBrowse link
G Scaf4 SR-related CTD associated factor 4 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004936500:10,307,868...10,342,952
Ensembl chrNW_004936500:10,307,835...10,342,588 		JBrowse link
G Scaf8 SR-related CTD associated factor 8 ISO RGD PMID:8692929 RGD:1299392 NCBI chrNW_004936489:7,059,075...7,289,656
Ensembl chrNW_004936489:7,059,081...7,231,870 		JBrowse link
G Scnm1 sodium channel modifier 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936580:1,370,944...1,374,671
Ensembl chrNW_004936580:1,370,944...1,374,831 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936526:2,763,243...2,779,506
Ensembl chrNW_004936526:2,760,639...2,779,657 		JBrowse link
G Sf1 splicing factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936599:4,533,664...4,546,857
Ensembl chrNW_004936599:4,533,795...4,546,853 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936588:1,335,143...1,342,573
Ensembl chrNW_004936588:1,335,166...1,342,575 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936474:20,092,159...20,116,612
Ensembl chrNW_004936474:20,091,359...20,116,746 		JBrowse link
G Sf3b5 splicing factor 3b subunit 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936625:2,151,018...2,151,743
Ensembl chrNW_004936625:2,151,153...2,151,413 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936515:3,172,962...3,179,915
Ensembl chrNW_004936515:3,168,838...3,178,588 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936486:1,180,069...1,192,227
Ensembl chrNW_004936486:1,180,069...1,190,117 		JBrowse link
G Smu1 SMU1 DNA replication regulator and spliceosomal factor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936524:1,615,299...1,639,133
Ensembl chrNW_004936524:1,615,129...1,639,193 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936491:14,106,124...14,118,823
Ensembl chrNW_004936491:14,106,066...14,118,856 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936661:3,030,104...3,041,877
Ensembl chrNW_004936661:3,029,802...3,041,877 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936550:1,323,351...1,335,074
Ensembl chrNW_004936550:1,323,378...1,335,069 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936706:2,065,315...2,068,709
Ensembl chrNW_004936706:2,065,419...2,067,487 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936567:849,300...855,214
Ensembl chrNW_004936567:849,397...855,187 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936507:11,973,818...11,980,370
Ensembl chrNW_004936507:11,973,564...11,982,283 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936491:14,442,904...14,450,717
Ensembl chrNW_004936491:14,443,026...14,450,631 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936492:289,834...295,883
Ensembl chrNW_004936492:289,770...297,670 		JBrowse link
G Snw1 SNW domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936488:6,494,556...6,531,297
Ensembl chrNW_004936488:6,494,562...6,531,600 		JBrowse link
G Son SON DNA and RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,721,155...8,752,906
Ensembl chrNW_004936500:8,722,087...8,752,844 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936474:9,573,015...9,602,229
Ensembl chrNW_004936474:9,572,974...9,602,229 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936694:1,280,104...1,296,301
Ensembl chrNW_004936694:1,280,155...1,295,779 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936668:1,523,232...1,668,591
Ensembl chrNW_004936668:1,525,289...1,562,064 		JBrowse link
G Srrt serrate, RNA effector molecule involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936543:843,144...855,491
Ensembl chrNW_004936543:843,164...855,491 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:5,055,258...5,059,118
Ensembl chrNW_004936490:5,055,253...5,059,116 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936737:1,678,425...1,705,569
Ensembl chrNW_004936737:1,678,425...1,705,609 		JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936474:9,970,047...9,975,260
Ensembl chrNW_004936474:9,968,469...9,972,799 		JBrowse link
G Sympk symplekin scaffold protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936706:2,161,933...2,195,586
Ensembl chrNW_004936706:2,158,608...2,195,640 		JBrowse link
G Tardbp TAR DNA binding protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) ARUK-UCL PMID:20215116 NCBI chrNW_004936504:8,182,126...8,247,680
Ensembl chrNW_004936504:8,180,059...8,247,850 		JBrowse link
G Tfip11 tuftelin interacting protein 11 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936657:1,112,662...1,128,510
Ensembl chrNW_004936657:1,112,682...1,128,530 		JBrowse link
G Thoc2 THO complex 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936479:6,855,405...6,972,256
Ensembl chrNW_004936479:6,855,411...6,972,256 		JBrowse link
G Thoc7 THO complex subunit 7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936637:2,569,261...2,575,653
Ensembl chrNW_004936637:2,569,078...2,575,269 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in IEA UniProt GO_REF:0000043
G Txnl4a thioredoxin like 4A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936616:220,255...232,042
Ensembl chrNW_004936616:220,274...234,870 		JBrowse link
G Txnl4b thioredoxin like 4B involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936475:21,830,630...21,838,819
Ensembl chrNW_004936475:21,830,610...21,839,578 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936500:937,537...967,791
Ensembl chrNW_004936500:958,256...967,829 		JBrowse link
G U2af1l4 U2 small nuclear RNA auxiliary factor 1 like 4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936570:578,088...580,321
Ensembl chrNW_004936570:578,178...580,133 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936981:176,552...193,798
Ensembl chrNW_004936981:176,647...193,152 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936712:1,625,429...1,661,561
Ensembl chrNW_004936712:1,625,802...1,661,533 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936544:7,485,986...7,549,625
Ensembl chrNW_004936544:7,485,986...7,549,643 		JBrowse link
G Wtap WT1 associated protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936489:11,222,513...11,249,432
Ensembl chrNW_004936489:11,227,156...11,249,818 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936620:4,069,956...4,145,212
Ensembl chrNW_004936620:4,069,934...4,145,745 		JBrowse link
G Yju2 YJU2 splicing factor homolog involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936588:2,426,786...2,438,811
Ensembl chrNW_004936588:2,427,126...2,440,939 		JBrowse link
G Zcrb1 zinc finger CCHC-type and RNA binding motif containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936512:1,044,899...1,057,497 JBrowse link
G Znf326 zinc finger protein 326 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936537:8,760,311...8,797,869
Ensembl chrNW_004936537:8,760,834...8,797,730 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:5,233,798...5,258,266
Ensembl chrNW_004936470:5,233,740...5,258,266 		JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:21,987,013...22,035,708
Ensembl chrNW_004936476:21,988,329...22,035,766 		JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:22,434,009...22,441,350
Ensembl chrNW_004936475:22,434,180...22,440,846 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) UniProt PMID:22099306 NCBI chrNW_004936483:17,634,873...17,643,740 JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:3,186,552...3,405,862
Ensembl chrNW_004936510:3,186,506...3,406,159 		JBrowse link
G Rnmt RNA guanine-7 methyltransferase involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936626:3,132,781...3,156,252
Ensembl chrNW_004936626:3,132,772...3,153,920 		JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk13 cyclin dependent kinase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:15,296,055...15,387,749
Ensembl chrNW_004936478:15,296,055...15,388,309 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:2,806,630...2,826,071
Ensembl chrNW_004936492:2,806,516...2,827,181 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:5,005,211...5,013,439
Ensembl chrNW_004936541:5,004,692...5,013,350 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004936544:7,633,266...7,690,624
Ensembl chrNW_004936544:7,633,071...7,691,655 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26371508) Ensembl
MGI		 PMID:26371508 GO_REF:0000107 NCBI chrNW_004936475:18,557,840...18,564,461
Ensembl chrNW_004936475:18,557,840...18,564,473 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:5,241,276...5,283,952
Ensembl chrNW_004936588:5,222,509...5,239,890
Ensembl chrNW_004936588:5,222,509...5,239,890 		JBrowse link
G LOC106144891 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) MGI PMID:19720736 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:19075228)
(PMID:19720736)		 MGI PMID:19075228 PMID:19720736 NCBI chrNW_004936519:419,332...580,706
Ensembl chrNW_004936519:419,571...580,730 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:825,171...830,010
Ensembl chrNW_004936721:825,075...832,755 		JBrowse link
G Puf60 poly(U) binding splicing factor 60 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:8,336,852...8,348,335
Ensembl chrNW_004936470:8,336,390...8,348,609 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:8,457,469...8,478,030
Ensembl chrNW_004936484:8,457,462...8,478,309 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15798186) InterPro
MGI
TreeGrafter
Ensembl		 PMID:15798186 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936519:4,822,587...5,126,203
Ensembl chrNW_004936519:4,822,581...5,190,979 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8940107) Ensembl
MGI		 PMID:8940107 GO_REF:0000107 NCBI chrNW_004936660:2,055,180...2,121,008
Ensembl chrNW_004936660:2,054,978...2,121,279 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:3,172,962...3,179,915
Ensembl chrNW_004936515:3,168,838...3,178,588 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23462647 GO_REF:0000107 RGD:11038736 NCBI chrNW_004936490:5,055,258...5,059,118
Ensembl chrNW_004936490:5,055,253...5,059,116 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:3,086,944...3,092,780
Ensembl chrNW_004936530:3,086,680...3,092,828 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936587:1,679,570...1,700,610
Ensembl chrNW_004936587:1,678,439...1,701,216 		JBrowse link
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:4,754,335...4,832,278
Ensembl chrNW_004936533:4,754,514...4,831,769 		JBrowse link
G Papola poly(A) polymerase alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:770,050...833,950
Ensembl chrNW_004936604:770,054...834,609 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISO (PMID:20861839) UniProt PMID:20861839 NCBI chrNW_004936737:1,678,425...1,705,569
Ensembl chrNW_004936737:1,678,425...1,705,609 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in IEA Ensembl GO_REF:0000107
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xab2 XPA binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:4,670,866...4,679,888
Ensembl chrNW_004936588:4,670,841...4,679,965 		JBrowse link
G Yju2 YJU2 splicing factor homolog involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936588:2,426,786...2,438,811
Ensembl chrNW_004936588:2,427,126...2,440,939 		JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101962734 pre-mRNA-splicing factor ISY1 homolog involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936798:192,308...202,367
Ensembl chrNW_004936798:192,918...202,372 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936613:364,492...401,402
Ensembl chrNW_004936613:364,462...401,402 		JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:19,906,227...19,915,815
Ensembl chrNW_004936478:19,902,337...19,915,858 		JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,365,457...1,482,497
Ensembl chrNW_004936638:1,365,648...1,483,277 		JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936581:4,870,126...4,873,158
Ensembl chrNW_004936581:4,869,686...4,873,217 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936750:1,699,738...1,715,993
Ensembl chrNW_004936750:1,699,521...1,719,423 		JBrowse link
G Cpsf4l cleavage and polyadenylation specific factor 4 like involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936655:977,413...985,067
Ensembl chrNW_004936655:977,469...983,241 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,629,078...1,651,147
Ensembl chrNW_004936581:1,629,041...1,651,328 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936875:310,491...319,027
Ensembl chrNW_004936875:310,442...320,085 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936584:6,042,785...6,066,758
Ensembl chrNW_004936584:6,040,336...6,066,703 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2 tau variant involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936787:838,153...842,118
Ensembl chrNW_004936787:838,485...840,353 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936533:4,754,335...4,832,278
Ensembl chrNW_004936533:4,754,514...4,831,769 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:13,753,061...13,783,990
Ensembl chrNW_004936471:13,753,030...13,784,049 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:261,294...263,789
Ensembl chrNW_004936543:262,033...262,848 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:8,739,992...8,759,165
Ensembl chrNW_004936475:8,741,821...8,759,223 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,236,121...2,241,086
Ensembl chrNW_004936661:2,232,484...2,241,629 		JBrowse link
G Papola poly(A) polymerase alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:770,050...833,950
Ensembl chrNW_004936604:770,054...834,609 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936517:9,207,840...9,266,948
Ensembl chrNW_004936517:9,207,738...9,266,952 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936561:3,245,697...3,303,181
Ensembl chrNW_004936561:3,245,687...3,303,185 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936580:646,353...723,045
Ensembl chrNW_004936580:646,347...722,691 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:7,401,532...7,465,264
Ensembl chrNW_004936549:7,408,563...7,463,895 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chrNW_004936475:3,266,763...3,328,209 JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in IEA Ensembl GO_REF:0000107
G Wdr33 WD repeat domain 33 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936469:43,505,507...43,610,851
Ensembl chrNW_004936469:43,505,476...43,610,851 		JBrowse link
G Zc3h3 zinc finger CCCH-type containing 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16115198) Ensembl
MGI		 PMID:16115198 GO_REF:0000107 NCBI chrNW_004936470:8,591,564...8,675,505
Ensembl chrNW_004936470:8,591,540...8,675,519 		JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936733:367,082...397,242
Ensembl chrNW_004936733:367,109...397,242 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352 		JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:18,822,317...18,825,158
Ensembl chrNW_004936474:18,822,327...18,825,114 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO (MGI:2676509|PMID:12975319)
(PMID:33230297)		 UniProt PMID:12975319 PMID:33230297 MGI:2676509 NCBI chrNW_004936515:5,448,490...5,459,295 JBrowse link
G Slbp stem-loop histone mRNA binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936477:21,672,143...21,680,899
Ensembl chrNW_004936477:21,671,842...21,680,915 		JBrowse link
G Znf473 zinc finger protein 473 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936889:39,812...56,052
Ensembl chrNW_004936889:41,119...57,582 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101962734 pre-mRNA-splicing factor ISY1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936798:192,308...202,367
Ensembl chrNW_004936798:192,918...202,372 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:3,172,962...3,179,915
Ensembl chrNW_004936515:3,168,838...3,178,588 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936583:4,162,381...4,194,615
Ensembl chrNW_004936583:4,161,945...4,194,699 		JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:8,894,285...8,940,831
Ensembl chrNW_004936539:8,892,841...8,940,871 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8940107) Ensembl
MGI
TreeGrafter		 PMID:8940107 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,055,180...2,121,008
Ensembl chrNW_004936660:2,054,978...2,121,279 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:5,055,258...5,059,118
Ensembl chrNW_004936490:5,055,253...5,059,116 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:3,077,940...3,095,985
Ensembl chrNW_004936510:3,077,892...3,095,832 		JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:1,629,078...1,651,147
Ensembl chrNW_004936581:1,629,041...1,651,328 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:8,739,992...8,759,165
Ensembl chrNW_004936475:8,741,821...8,759,223 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 ISO RGD PMID:34731606 RGD:329845875 NCBI chrNW_004936492:4,624,013...4,826,715
Ensembl chrNW_004936492:4,645,167...4,821,291 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:7,485,986...7,549,625
Ensembl chrNW_004936544:7,485,986...7,549,643 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29799838) Ensembl
MGI		 PMID:29799838 GO_REF:0000107 NCBI chrNW_004936582:130,593...161,275
Ensembl chrNW_004936582:126,736...161,586 		JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cactin cactin, spliceosome C complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:2,051,636...2,061,651
Ensembl chrNW_004936588:2,052,425...2,061,641 		JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:6,239,866...6,265,743 JBrowse link
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chrNW_004936487:17,023,993...17,030,275 JBrowse link
G Cwc15 CWC15 spliceosome associated protein homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936674:76,022...83,110
Ensembl chrNW_004936674:76,016...83,225 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:5,861,391...5,899,757
Ensembl chrNW_004936572:5,860,639...5,899,804 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936534:8,379,386...8,418,963
Ensembl chrNW_004936534:8,382,485...8,418,938 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936469:24,963,691...25,019,961
Ensembl chrNW_004936469:24,963,905...25,018,961 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936512:7,342,370...7,394,064
Ensembl chrNW_004936512:7,342,355...7,363,101 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936484:8,457,469...8,478,030
Ensembl chrNW_004936484:8,457,462...8,478,309 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chrNW_004936504:4,294,010...4,304,669 JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:3,577,552...3,588,825
Ensembl chrNW_004936599:3,577,480...3,588,706 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:2,763,243...2,779,506
Ensembl chrNW_004936526:2,760,639...2,779,657 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936667:426,752...449,562
Ensembl chrNW_004936667:423,883...450,214 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11158314) Ensembl
MGI
TreeGrafter		 PMID:11158314 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:1,699,774...1,785,285
Ensembl chrNW_004936562:1,753,088...1,785,310 		JBrowse link
G Celf2 CUGBP Elav-like family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11158314) Ensembl
MGI
TreeGrafter		 PMID:11158314 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:3,904,726...4,401,560
Ensembl chrNW_004936484:3,904,720...4,399,567 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936580:1,897,694...1,911,817
Ensembl chrNW_004936580:1,899,877...1,911,348 		JBrowse link
G Celf5 CUGBP Elav-like family member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:1,864,793...1,887,082
Ensembl chrNW_004936588:1,852,126...1,887,240 		JBrowse link
G Celf6 CUGBP Elav-like family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:31,668,520...31,700,581
Ensembl chrNW_004936471:31,666,297...31,700,587 		JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,167,930...5,188,334
Ensembl chrNW_004936580:5,167,930...5,188,460 		JBrowse link
G LOC101966736 putative RNA-binding protein Luc7-like 2 involved_in IEA InterPro
UniProt
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936592:3,631,849...3,703,567
Ensembl chrNW_004936592:3,631,864...3,705,292 		JBrowse link
G LOC106144891 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:11158314) MGI PMID:11158314 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Luc7l LUC7 like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936501:687,352...722,720
Ensembl chrNW_004936501:687,036...722,919 		JBrowse link
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936490:10,980,398...11,011,671
Ensembl chrNW_004936490:10,976,147...11,011,676 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:14671308), (PMID:16717059) MGI PMID:14671308 PMID:16717059 NCBI chrNW_004936519:419,332...580,706
Ensembl chrNW_004936519:419,571...580,730 		JBrowse link
G Nol3 nucleolar protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,644,299...17,648,213
Ensembl chrNW_004936475:17,644,653...17,648,211 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22802532)
(PMID:10829067)		 Ensembl
MGI		 PMID:10829067 PMID:22802532 GO_REF:0000107 NCBI chrNW_004936537:2,676,920...2,748,568
Ensembl chrNW_004936537:2,676,130...2,747,524 		JBrowse link
G Puf60 poly(U) binding splicing factor 60 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:8,336,852...8,348,335
Ensembl chrNW_004936470:8,336,390...8,348,609 		JBrowse link
G Rbmx RNA binding motif protein X-linked ISO RGD PMID:19282290 RGD:2316827 NCBI chrNW_004936513:10,429,862...10,442,509
Ensembl chrNW_004936513:10,429,824...10,437,108 		JBrowse link
G Setx senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:18,858,384...18,945,253
Ensembl chrNW_004936487:18,855,744...18,944,158 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:9,068,012...9,079,717
Ensembl chrNW_004936474:9,066,103...9,079,780 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:3,086,944...3,092,780
Ensembl chrNW_004936530:3,086,680...3,092,828 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:130,593...161,275
Ensembl chrNW_004936582:126,736...161,586 		JBrowse link
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:4,613,197...4,705,911
Ensembl chrNW_004936541:4,617,555...4,705,866 		JBrowse link
mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius intron-binding spliceosomal factor involved_in IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936673:922,393...1,032,572
Ensembl chrNW_004936673:922,341...1,033,307 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381 		JBrowse link
G Bud13 BUD13 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:2,027,316...2,053,522
Ensembl chrNW_004936542:2,029,690...2,052,854 		JBrowse link
G Bud31 BUD31 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936750:1,676,361...1,684,194
Ensembl chrNW_004936750:1,676,359...1,686,072 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,051,636...2,061,651
Ensembl chrNW_004936588:2,052,425...2,061,641 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,251,132...15,278,264
Ensembl chrNW_004936490:15,251,110...15,278,732 		JBrowse link
G Cdc40 cell division cycle 40 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936564:6,096,180...6,143,852
Ensembl chrNW_004936564:6,096,167...6,143,213 		JBrowse link
G Cdc5l cell division cycle 5 like involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:15,647,470...15,698,095
Ensembl chrNW_004936476:15,648,678...15,698,106 		JBrowse link
G Cenatac centrosomal AT-AC splicing factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:3,965,259...3,974,736
Ensembl chrNW_004936542:3,965,256...3,974,739 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936485:328,077...351,323
Ensembl chrNW_004936485:327,835...350,132 		JBrowse link
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:17,023,993...17,030,275 JBrowse link
G Cwc15 CWC15 spliceosome associated protein homolog involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936674:76,022...83,110
Ensembl chrNW_004936674:76,016...83,225 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936509:8,904,613...8,960,852
Ensembl chrNW_004936509:8,903,833...8,960,882 		JBrowse link
G Cwc25 CWC25 spliceosome associated protein homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:14,201,851...14,226,724
Ensembl chrNW_004936490:14,202,679...14,226,704 		JBrowse link
G Cwf19l1 CWF19 like cell cycle control factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:7,919...30,386
Ensembl chrNW_004936636:7,898...30,387 		JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:8,156,031...8,187,077
Ensembl chrNW_004936525:8,156,147...8,199,471 		JBrowse link
G Dbr1 debranching RNA lariats 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10982890) Ensembl
MGI
TreeGrafter		 PMID:10982890 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936540:504,638...515,913
Ensembl chrNW_004936540:505,619...515,964 		JBrowse link
G Ddx23 DEAD-box helicase 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:6,666,972...6,682,596
Ensembl chrNW_004936512:6,666,814...6,682,728 		JBrowse link
G Ddx39a DExD-box helicase 39A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:2,973,340...2,981,973
Ensembl chrNW_004936659:2,972,420...2,980,919 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936727:1,968,032...1,980,789
Ensembl chrNW_004936727:1,968,094...1,980,785 		JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:1,787,830...1,793,352
Ensembl chrNW_004936597:1,787,537...1,793,866 		JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:324,244...341,667
Ensembl chrNW_004936837:324,243...341,713 		JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:21,811,693...21,830,560
Ensembl chrNW_004936475:21,811,463...21,830,577 		JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936541:85,273...122,161
Ensembl chrNW_004936541:85,252...123,040 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:1,216,584...1,259,355
Ensembl chrNW_004936541:1,217,138...1,257,935 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,148,401...4,160,290
Ensembl chrNW_004936594:4,147,685...4,160,293 		JBrowse link
G Ess2 ess-2 splicing factor homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:3,132,234...3,154,091
Ensembl chrNW_004936619:3,130,927...3,154,098 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936556:1,819,656...1,865,858
Ensembl chrNW_004936556:1,820,645...1,866,131 		JBrowse link
G Gpkow G-patch domain and KOW motifs involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936721:1,013,776...1,031,018
Ensembl chrNW_004936721:1,011,492...1,031,440 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936597:4,712,201...4,714,949 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:6,576,933...6,585,734
Ensembl chrNW_004936509:6,577,001...6,581,934 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:25719671) UniProt PMID:25719671 NCBI chrNW_004936880:368,041...425,967 JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936513:10,762,417...10,779,641
Ensembl chrNW_004936513:10,762,398...10,779,374 		JBrowse link
G Ik IK cytokine involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:9,589,035...9,601,266
Ensembl chrNW_004936531:9,588,555...9,601,293 		JBrowse link
G LOC101956200 probable ATP-dependent RNA helicase DDX46 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936597:2,007,910...2,039,739
Ensembl chrNW_004936597:1,996,577...2,052,600 		JBrowse link
G LOC101957654 small nuclear ribonucleoprotein-associated proteins B and B' involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936601:4,225,652...4,226,723 JBrowse link
G LOC101960245 U5 small nuclear ribonucleoprotein 200 kDa helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:365,974...393,264
Ensembl chrNW_004936744:366,303...393,229 		JBrowse link
G LOC101961297 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936685:1,015,939...1,016,884 JBrowse link
G LOC101961463 serine/arginine-rich splicing factor 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,860,681...3,862,109 JBrowse link
G LOC101962221 heterogeneous nuclear ribonucleoprotein A3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936657:2,947,616...2,948,802 JBrowse link
G LOC101962734 pre-mRNA-splicing factor ISY1 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:192,308...202,367
Ensembl chrNW_004936798:192,918...202,372 		JBrowse link
G LOC101963985 heterogeneous nuclear ribonucleoproteins A2/B1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:10,703,450...10,742,975 JBrowse link
G LOC101967824 heterogeneous nuclear ribonucleoprotein A3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:1,574,475...1,575,959 JBrowse link
G LOC101968724 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:11,812,603...11,813,895 JBrowse link
G LOC101970638 heterogeneous nuclear ribonucleoproteins A2/B1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:12,298,622...12,299,633 JBrowse link
G LOC101971677 NHP2-like protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936762:1,784,323...1,784,760 JBrowse link
G LOC101972133 zinc finger CCHC-type and RNA-binding motif-containing protein 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936615:61,422...69,466 JBrowse link
G LOC101973962 small nuclear ribonucleoprotein E involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936715:1,359,528...1,359,972 JBrowse link
G LOC101975362 heterogeneous nuclear ribonucleoprotein A3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:36,269,055...36,270,802 JBrowse link
G LOC101976474 protein FRA10AC1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:1,314,679...1,343,234
Ensembl chrNW_004936601:1,317,090...1,343,234 		JBrowse link
G LOC101977351 heterogeneous nuclear ribonucleoproteins A2/B1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936859:709,392...710,609 JBrowse link
G LOC110596870 RNA-binding protein 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,968,178...2,984,033
Ensembl chrNW_004936599:2,975,350...2,984,060 		JBrowse link
G LOC110597639 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936482:7,766,607...7,766,869 JBrowse link
G LOC110598504 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:37,088,095...37,088,504 JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936727:1,746,072...1,751,944
Ensembl chrNW_004936727:1,745,942...1,751,959 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10369684), (PMID:10523320) MGI
TreeGrafter
InterPro
Ensembl
UniProt		 PMID:10369684 PMID:10523320 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:140,014...147,000
Ensembl chrNW_004936602:140,004...147,035 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936596:2,903,363...2,916,629
Ensembl chrNW_004936596:2,903,358...2,916,629 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:8,541,293...8,545,280
Ensembl chrNW_004936478:8,540,330...8,545,348 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936535:3,089,778...3,103,342
Ensembl chrNW_004936535:3,089,779...3,103,310 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936588:1,390,456...1,393,940
Ensembl chrNW_004936588:1,390,459...1,394,004 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936589:1,107,534...1,113,439
Ensembl chrNW_004936589:1,105,341...1,113,452 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) UniProt PMID:28502770 NCBI chrNW_004937158:128,190...157,130 JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936869:568,324...589,972
Ensembl chrNW_004936869:568,840...590,269 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit NOT|involved_in ISO
IEA		 (MGI:6095345|PMID:28637692) UniProt
Ensembl		 PMID:28637692 GO_REF:0000107 MGI:6095345 NCBI chrNW_004936880:646,835...661,312
Ensembl chrNW_004936880:644,079...661,544 		JBrowse link
G Mfap1 microfibril associated protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:6,863,262...6,876,669
Ensembl chrNW_004936471:6,860,497...6,876,674 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936647:520,542...525,226
Ensembl chrNW_004936647:520,494...525,226 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10719891) Ensembl
MGI
TreeGrafter		 PMID:10719891 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936494:1,720,030...1,853,177
Ensembl chrNW_004936494:1,717,268...1,853,430 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936706:2,261,737...2,282,922
Ensembl chrNW_004936706:2,261,904...2,274,339 		JBrowse link
G Paxbp1 PAX3 and PAX7 binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936500:9,447,091...9,481,612
Ensembl chrNW_004936500:9,447,424...9,480,550 		JBrowse link
G Phf5a PHD finger protein 5A involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:452,628...461,915
Ensembl chrNW_004936492:452,628...461,910 		JBrowse link
G Plrg1 pleiotropic regulator 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936576:1,284,758...1,297,758
Ensembl chrNW_004936576:1,282,664...1,297,818 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:21,602,555...21,616,857
Ensembl chrNW_004936474:21,602,521...21,619,655 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:22,552,484...22,570,860
Ensembl chrNW_004936476:22,552,566...22,571,001 		JBrowse link
G Ppp1r8 protein phosphatase 1 regulatory subunit 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:12,062,816...12,085,248
Ensembl chrNW_004936474:12,062,817...12,086,315 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:604,709...632,788
Ensembl chrNW_004936580:605,138...633,104 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11867543) MGI
TreeGrafter
Ensembl
InterPro		 PMID:11867543 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936994:239,688...252,269
Ensembl chrNW_004936994:239,682...252,317 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936522:8,540,839...8,580,604
Ensembl chrNW_004936522:8,562,738...8,580,956 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936704:272,998...282,189
Ensembl chrNW_004936704:273,282...281,010 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936559:305,443...321,051
Ensembl chrNW_004936559:305,392...321,080 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:24,963,691...25,019,961
Ensembl chrNW_004936469:24,963,905...25,018,961 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:7,342,370...7,394,064
Ensembl chrNW_004936512:7,342,355...7,363,101 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936514:11,175,410...11,220,928
Ensembl chrNW_004936514:11,175,526...11,220,241 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936538:7,780,022...7,814,575
Ensembl chrNW_004936538:7,780,022...7,814,575 		JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936502:12,923,890...12,952,179
Ensembl chrNW_004936502:12,925,910...12,955,470 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936484:8,457,469...8,478,030
Ensembl chrNW_004936484:8,457,462...8,478,309 		JBrowse link
G Rbm41 RNA binding motif protein 41 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:7,585,352...7,655,419
Ensembl chrNW_004936499:7,585,324...7,655,384 		JBrowse link
G Rbm44 RNA binding motif protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:556,497...585,503
Ensembl chrNW_004936525:556,513...569,589 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:1,639,919...1,672,143
Ensembl chrNW_004936529:1,639,880...1,672,282 		JBrowse link
G Rbm6 RNA binding motif protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:1,534,816...1,635,012
Ensembl chrNW_004936529:1,534,657...1,635,071 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936867:666,208...667,851
Ensembl chrNW_004936867:666,199...667,828 		JBrowse link
G Rbmx2 RNA binding motif protein X-linked 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936479:1,232,921...1,245,665
Ensembl chrNW_004936479:1,233,899...1,245,619 		JBrowse link
G Rnf113a ring finger protein 113A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,078,201...10,079,400
Ensembl chrNW_004936479:10,078,304...10,079,338 		JBrowse link
G Rnpc3 RNA binding region (RNP1, RRM) containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936730:1,063,719...1,086,983
Ensembl chrNW_004936730:1,063,516...1,085,333 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:1,784,396...1,794,269
Ensembl chrNW_004936694:1,784,480...1,793,481 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936519:4,822,587...5,126,203
Ensembl chrNW_004936519:4,822,581...5,190,979 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936599:3,577,552...3,588,825
Ensembl chrNW_004936599:3,577,480...3,588,706 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210 		JBrowse link
G Sf1 splicing factor 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936599:4,533,664...4,546,857
Ensembl chrNW_004936599:4,533,795...4,546,853 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,335,143...1,342,573
Ensembl chrNW_004936588:1,335,166...1,342,575 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936474:20,092,159...20,116,612
Ensembl chrNW_004936474:20,091,359...20,116,746 		JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11252167)
(PMID:23211737)		 MGI
Ensembl		 PMID:11252167 PMID:23211737 GO_REF:0000107 NCBI chrNW_004936506:1,749,591...1,790,860
Ensembl chrNW_004936506:1,749,563...1,791,739 		JBrowse link
G Sf3b2 splicing factor 3b subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,477,882...3,494,366
Ensembl chrNW_004936599:3,477,589...3,494,354 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:23,038,424...23,086,134
Ensembl chrNW_004936475:23,037,687...23,086,188 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 involved_in ISO (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:36797247) ComplexPortal PMID:27720643 PMID:29360106 PMID:32494006 PMID:36797247 NCBI chrNW_004936580:260,013...265,057 JBrowse link
G Sf3b5 splicing factor 3b subunit 5 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936625:2,151,018...2,151,743
Ensembl chrNW_004936625:2,151,153...2,151,413 		JBrowse link
G Sf3b6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737) Ensembl
MGI		 PMID:23211737 GO_REF:0000107 NCBI chrNW_004936493:7,906,701...7,912,777
Ensembl chrNW_004936493:7,906,701...7,912,438 		JBrowse link
G Slc4a1ap solute carrier family 4 member 1 adaptor protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:4,931,755...4,959,628
Ensembl chrNW_004936493:4,933,931...4,960,269 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936515:3,172,962...3,179,915
Ensembl chrNW_004936515:3,168,838...3,178,588 		JBrowse link
G Smu1 SMU1 DNA replication regulator and spliceosomal factor involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936524:1,615,299...1,639,133
Ensembl chrNW_004936524:1,615,129...1,639,193 		JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:19,760,653...19,778,224
Ensembl chrNW_004936474:19,760,766...19,778,265 		JBrowse link
G Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:810,423...813,273
Ensembl chrNW_004936501:805,861...813,367 		JBrowse link
G Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:1,297,517...1,302,410
Ensembl chrNW_004936558:1,297,550...1,302,283 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 involved_in ISO (PMID:9531537) UniProt PMID:9531537 NCBI chrNW_004936664:3,035,679...3,054,577 JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:3,030,104...3,041,877
Ensembl chrNW_004936661:3,029,802...3,041,877 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:2,572,520...2,582,297
Ensembl chrNW_004936483:2,572,491...2,582,492 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:16,142,231...16,161,761
Ensembl chrNW_004936485:16,157,485...16,163,698 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:3,296,350...3,305,985 JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:1,323,351...1,335,074
Ensembl chrNW_004936550:1,323,378...1,335,069 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:2,065,315...2,068,709
Ensembl chrNW_004936706:2,065,419...2,067,487 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936567:849,300...855,214
Ensembl chrNW_004936567:849,397...855,187 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936507:11,973,818...11,980,370
Ensembl chrNW_004936507:11,973,564...11,982,283 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936491:14,442,904...14,450,717
Ensembl chrNW_004936491:14,443,026...14,450,631 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936805:86,244...91,074
Ensembl chrNW_004936805:85,051...94,547 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IEA Ensembl
UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:289,834...295,883
Ensembl chrNW_004936492:289,770...297,670 		JBrowse link
G Snw1 SNW domain containing 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936488:6,494,556...6,531,297
Ensembl chrNW_004936488:6,494,562...6,531,600 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,280,104...1,296,301
Ensembl chrNW_004936694:1,280,155...1,295,779 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:9,068,012...9,079,717
Ensembl chrNW_004936474:9,066,103...9,079,780 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936510:3,077,940...3,095,985
Ensembl chrNW_004936510:3,077,892...3,095,832 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:22,790,411...22,799,498
Ensembl chrNW_004936476:22,790,411...22,799,452 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:12,475,906...12,481,501
Ensembl chrNW_004936508:12,475,661...12,481,501 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:484,922...491,576
Ensembl chrNW_004936668:484,917...495,699 		JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936474:9,970,047...9,975,260
Ensembl chrNW_004936474:9,968,469...9,972,799 		JBrowse link
G Tra2a transformer 2 alpha homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:622,527...642,529
Ensembl chrNW_004936478:623,342...642,525 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22194695) Ensembl
MGI		 PMID:22194695 GO_REF:0000107 NCBI chrNW_004936578:3,949,820...3,970,462
Ensembl chrNW_004936578:3,949,820...3,970,462 		JBrowse link
G Txnl4a thioredoxin like 4A involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936616:220,255...232,042
Ensembl chrNW_004936616:220,274...234,870 		JBrowse link
G Txnl4b thioredoxin like 4B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936475:21,830,630...21,838,819
Ensembl chrNW_004936475:21,830,610...21,839,578 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936500:937,537...967,791
Ensembl chrNW_004936500:958,256...967,829 		JBrowse link
G U2af1l4 U2 small nuclear RNA auxiliary factor 1 like 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936570:578,088...580,321
Ensembl chrNW_004936570:578,178...580,133 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936981:176,552...193,798
Ensembl chrNW_004936981:176,647...193,152 		JBrowse link
G Ubl5 ubiquitin like 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:303,279...305,125
Ensembl chrNW_004936659:303,252...305,122 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,625,429...1,661,561
Ensembl chrNW_004936712:1,625,802...1,661,533 		JBrowse link
G Usp49 ubiquitin specific peptidase 49 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:17,946,875...18,002,081
Ensembl chrNW_004936476:17,991,688...18,000,794 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936667:426,752...449,562
Ensembl chrNW_004936667:423,883...450,214 		JBrowse link
G Wdr83 WD repeat domain 83 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:1,796,030...1,803,714
Ensembl chrNW_004936659:1,796,067...1,803,683 		JBrowse link
G Xab2 XPA binding protein 2 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936588:4,670,866...4,679,888
Ensembl chrNW_004936588:4,670,841...4,679,965 		JBrowse link
G Yju2 YJU2 splicing factor homolog involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936588:2,426,786...2,438,811
Ensembl chrNW_004936588:2,427,126...2,440,939 		JBrowse link
G Yju2b YJU2 splicing factor homolog B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936659:2,513,139...2,525,982
Ensembl chrNW_004936659:2,515,747...2,525,799 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10564280 GO_REF:0000118 RGD:634512 NCBI chrNW_004936582:130,593...161,275
Ensembl chrNW_004936582:126,736...161,586 		JBrowse link
G Zcrb1 zinc finger CCHC-type and RNA binding motif containing 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936512:1,044,899...1,057,497 JBrowse link
G Zmat2 zinc finger matrin-type 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:9,633,460...9,640,366
Ensembl chrNW_004936531:9,630,958...9,641,948 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:5,233,798...5,258,266
Ensembl chrNW_004936470:5,233,740...5,258,266 		JBrowse link
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004936722:1,252,083...1,264,018
Ensembl chrNW_004936722:1,227,198...1,264,855 		JBrowse link
G C1qbp complement C1q binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936677:2,371,400...2,376,608
Ensembl chrNW_004936677:2,371,418...2,376,608 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21470964) Ensembl
MGI		 PMID:21470964 GO_REF:0000107 NCBI chrNW_004936500:5,317,109...5,423,593
Ensembl chrNW_004936500:5,316,164...5,404,353 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18480465) Ensembl
MGI		 PMID:18480465 GO_REF:0000107 NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:22570490 RGD:9999428 NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579 		JBrowse link
G LOC106144891 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16376875) MGI PMID:16376875 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Pcbp4 poly(rC) binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) TreeGrafter
MGI		 PMID:23636947 GO_REF:0000118 NCBI chrNW_004936529:3,304,171...3,308,422
Ensembl chrNW_004936529:3,300,712...3,308,288 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936559:1,091,575...1,186,452
Ensembl chrNW_004936559:1,091,494...1,186,440 		JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936502:12,923,890...12,952,179
Ensembl chrNW_004936502:12,925,910...12,955,470 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,472,170...1,652,314
Ensembl chrNW_004936486:1,472,227...1,653,209 		JBrowse link
G Rbm42 RNA binding motif protein 42 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936570:676,775...685,415
Ensembl chrNW_004936570:676,537...685,419 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,784,396...1,794,269
Ensembl chrNW_004936694:1,784,480...1,793,481 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:610,478...616,529
Ensembl chrNW_004936720:610,478...616,546 		JBrowse link
G Sfswap splicing factor SWAP involved_in ISO PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chrNW_004936660:2,055,180...2,121,008
Ensembl chrNW_004936660:2,054,978...2,121,279 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:9,068,012...9,079,717
Ensembl chrNW_004936474:9,066,103...9,079,780 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:13,113,191...13,140,956
Ensembl chrNW_004936474:13,113,867...13,140,599 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:3,086,944...3,092,780
Ensembl chrNW_004936530:3,086,680...3,092,828 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:12,475,906...12,481,501
Ensembl chrNW_004936508:12,475,661...12,481,501 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:484,922...491,576
Ensembl chrNW_004936668:484,917...495,699 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936981:176,552...193,798
Ensembl chrNW_004936981:176,647...193,152 		JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chrNW_004936480:400,287...407,677
Ensembl chrNW_004936480:399,224...407,704 		JBrowse link
G Cdc73 cell division cycle 73 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,365,457...1,482,497
Ensembl chrNW_004936638:1,365,648...1,483,277 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:1,946,684...1,987,036
Ensembl chrNW_004936519:1,946,652...1,987,070 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:9342333) UniProt PMID:9342333 NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047 		JBrowse link
positive regulation of mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004936490:16,617,774...16,620,384
Ensembl chrNW_004936490:16,617,773...16,619,738 		JBrowse link
G Exosc10 exosome component 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16789828) Ensembl
MGI		 PMID:16789828 GO_REF:0000107 NCBI chrNW_004936474:130,735...153,608
Ensembl chrNW_004936474:130,329...153,962 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16789828) Ensembl
MGI		 PMID:16789828 GO_REF:0000107 NCBI chrNW_004936596:2,469,444...2,505,688
Ensembl chrNW_004936596:2,468,116...2,505,688 		JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004937030:243,104...258,355 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16789828) Ensembl
MGI		 PMID:16789828 GO_REF:0000107 NCBI chrNW_004936479:10,093,290...10,111,293
Ensembl chrNW_004936479:10,093,290...10,111,752 		JBrowse link
positive regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 ISO RGD PMID:10331393 RGD:10450893 NCBI chrNW_004936778:1,056,259...1,137,772
Ensembl chrNW_004936778:1,053,871...1,137,828 		JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf3 CUGBP Elav-like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,897,694...1,911,817
Ensembl chrNW_004936580:1,899,877...1,911,348 		JBrowse link
G Cirbp cold inducible RNA binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:636,041...639,564
Ensembl chrNW_004936588:636,026...640,409 		JBrowse link
G Dazap1 DAZ associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936588:730,626...758,074
Ensembl chrNW_004936588:740,038...758,074 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004936594:4,148,401...4,160,290
Ensembl chrNW_004936594:4,147,685...4,160,293 		JBrowse link
G Hmx2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936486:11,789,991...11,792,500
Ensembl chrNW_004936486:11,789,991...11,792,068 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923 		JBrowse link
G Lmntd2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936888:397,581...403,551
Ensembl chrNW_004936888:396,629...403,614 		JBrowse link
G LOC101958224 RNA-binding protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936620:2,486,737...2,487,863 JBrowse link
G LOC106144891 CUGBP Elav-like family member 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:1,112,724...1,219,790
Ensembl chrNW_004936498:1,112,663...1,220,634 		JBrowse link
G Obi1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936511:2,800,466...2,847,896
Ensembl chrNW_004936511:2,800,425...2,848,628 		JBrowse link
G Prdx6 peroxiredoxin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:14,223,422...14,233,634
Ensembl chrNW_004936481:14,222,696...14,233,641 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18480465) Ensembl
MGI		 PMID:18480465 GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Rbm3 RNA binding motif protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936721:547,751...551,273
Ensembl chrNW_004936721:547,777...551,270 		JBrowse link
G Rbmx RNA binding motif protein X-linked involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936513:10,429,862...10,442,509
Ensembl chrNW_004936513:10,429,824...10,437,108 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) TreeGrafter
MGI		 PMID:23636947 GO_REF:0000118 NCBI chrNW_004936580:260,013...265,057 JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chrNW_004936646:638,956...649,501
Ensembl chrNW_004936646:640,253...645,617 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936664:3,035,679...3,054,577 JBrowse link
G Snw1 SNW domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:6,494,556...6,531,297
Ensembl chrNW_004936488:6,494,562...6,531,600 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:1,775,412...1,778,389
Ensembl chrNW_004936594:1,777,376...1,778,164 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,691,872...18,749,217
Ensembl chrNW_004936474:18,691,835...18,749,235 		JBrowse link
G Tra2a transformer 2 alpha homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22194695) TreeGrafter
MGI		 PMID:22194695 GO_REF:0000118 NCBI chrNW_004936478:622,527...642,529
Ensembl chrNW_004936478:623,342...642,525 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22194695) Ensembl
MGI
TreeGrafter		 PMID:22194695 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936578:3,949,820...3,970,462
Ensembl chrNW_004936578:3,949,820...3,970,462 		JBrowse link
G Zfp64 ZFP64 zinc finger protein acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004936514:3,028,526...3,100,294
Ensembl chrNW_004936514:3,028,491...3,100,812 		JBrowse link
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arb2a ARB2 cotranscriptional regulator A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936523:9,037,516...9,485,257
Ensembl chrNW_004936523:9,037,490...9,486,495 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32109384) Ensembl
MGI
TreeGrafter		 PMID:32109384 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:1,699,774...1,785,285
Ensembl chrNW_004936562:1,753,088...1,785,310 		JBrowse link
G Celf2 CUGBP Elav-like family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:3,904,726...4,401,560
Ensembl chrNW_004936484:3,904,720...4,399,567 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:1,897,694...1,911,817
Ensembl chrNW_004936580:1,899,877...1,911,348 		JBrowse link
G Celf5 CUGBP Elav-like family member 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,864,793...1,887,082
Ensembl chrNW_004936588:1,852,126...1,887,240 		JBrowse link
G Celf6 CUGBP Elav-like family member 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:31,668,520...31,700,581
Ensembl chrNW_004936471:31,666,297...31,700,587 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,806,630...2,826,071
Ensembl chrNW_004936492:2,806,516...2,827,181 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:5,005,211...5,013,439
Ensembl chrNW_004936541:5,004,692...5,013,350 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chrNW_004936500:5,317,109...5,423,593
Ensembl chrNW_004936500:5,316,164...5,404,353 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936566:2,354,301...2,425,140
Ensembl chrNW_004936566:2,354,441...2,425,176 		JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:868,880...886,164
Ensembl chrNW_004936595:868,851...886,170 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:25689357) CAFA PMID:25689357 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:15,088,815...15,131,048
Ensembl chrNW_004936474:15,088,816...15,118,310 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:2,469,396...3,001,997
Ensembl chrNW_004936476:2,469,349...3,000,993 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:14,232,114...14,403,910
Ensembl chrNW_004936470:14,239,841...14,403,916 		JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:3,764,401...3,774,492
Ensembl chrNW_004936588:3,766,332...3,773,872 		JBrowse link
G LOC101976473 RNA-binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,960,066...2,968,092
Ensembl chrNW_004936599:2,960,063...2,968,210 		JBrowse link
G LOC106144891 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314)
(PMID:19720736)		 UniProt
MGI		 PMID:11158314 PMID:19720736 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:7,823,644...7,832,170
Ensembl chrNW_004936522:7,823,646...7,832,944 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004936519:419,332...580,706
Ensembl chrNW_004936519:419,571...580,730 		JBrowse link
G Mbnl2 muscleblind like splicing regulator 2 involved_in
acts_upstream_of_or_within		 ISO PMID:31283468
(PMID:19720736)		 UniProt
MGI		 PMID:19720736 PMID:31283468 RGD:243049249 NCBI chrNW_004936472:12,705,804...12,856,058
Ensembl chrNW_004936472:12,705,804...12,856,048 		JBrowse link
G Myod1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9525963) Ensembl
MGI		 PMID:9525963 GO_REF:0000107 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936494:1,720,030...1,853,177
Ensembl chrNW_004936494:1,717,268...1,853,430 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:2,261,737...2,282,922
Ensembl chrNW_004936706:2,261,904...2,274,339 		JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936538:6,138,993...6,184,730
Ensembl chrNW_004936538:6,138,962...6,184,837 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044 		JBrowse link
G Puf60 poly(U) binding splicing factor 60 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936470:8,336,852...8,348,335
Ensembl chrNW_004936470:8,336,390...8,348,609 		JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23300487) InterPro
MGI
TreeGrafter		 PMID:23300487 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936530:5,259,612...6,843,668
Ensembl chrNW_004936530:6,306,877...6,845,073 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22357600)
Cacna1c
Atp2b1, Mef2a
Fxr1, Mef2a, Mtmr3
Mcl1		 Ensembl
MGI
TreeGrafter
RGD
InterPro		 PMID:22357600 PMID:27239029 PMID:28993448 PMID:31778749 PMID:35641779 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:329845872 RGD:329845873 RGD:329845874 RGD:329848961 NCBI chrNW_004936492:4,624,013...4,826,715
Ensembl chrNW_004936492:4,645,167...4,821,291 		JBrowse link
G Rbfox3 RNA binding fox-1 homolog 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936594:3,393,675...3,744,755
Ensembl chrNW_004936594:3,393,666...3,414,628 		JBrowse link
G Rbm11 RNA binding motif protein 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21984414) MGI
TreeGrafter
Ensembl		 PMID:21984414 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936505:7,246,854...7,256,763
Ensembl chrNW_004936505:7,246,844...7,256,790 		JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936704:1,779,981...1,787,339
Ensembl chrNW_004936704:1,779,482...1,788,710 		JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:2,780,110...2,782,775
Ensembl chrNW_004936529:2,780,110...2,782,455 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:27289039
PMID:33805770		 UniProt PMID:27289039 PMID:33805770 RGD:152995553 RGD:152995577 NCBI chrNW_004936486:1,472,170...1,652,314
Ensembl chrNW_004936486:1,472,227...1,653,209 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936552:3,291,727...3,304,332
Ensembl chrNW_004936552:3,291,755...3,304,332 		JBrowse link
G Rbm25 RNA binding motif protein 25 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:2,395,451...2,458,367
Ensembl chrNW_004936488:2,395,467...2,458,367 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:7,852,346...8,016,612
Ensembl chrNW_004936482:7,852,327...8,016,819 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,639,919...1,672,143
Ensembl chrNW_004936529:1,639,880...1,672,282 		JBrowse link
G Rbm7 RNA binding motif protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936612:239,618...247,277
Ensembl chrNW_004936612:240,340...247,197 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936867:666,208...667,851
Ensembl chrNW_004936867:666,199...667,828 		JBrowse link
G Rbmx RNA binding motif protein X-linked involved_in ISO (PMID:12165565), (PMID:12761049) UniProt PMID:12165565 PMID:12761049 NCBI chrNW_004936513:10,429,862...10,442,509
Ensembl chrNW_004936513:10,429,824...10,437,108 		JBrowse link
G Rbpms RNA binding protein, mRNA processing factor involved_in ISO PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chrNW_004936792:236,509...404,510
Ensembl chrNW_004936792:236,503...404,510 		JBrowse link
G Rbpms2 RNA binding protein, mRNA processing factor 2 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004936471:25,103,766...25,128,289
Ensembl chrNW_004936471:25,103,693...25,128,295 		JBrowse link
G Rest RE1 silencing transcription factor involved_in ISO (MGI:6201823|PMID:21884984) UniProt PMID:21884984 MGI:6201823 NCBI chrNW_004936482:19,018,454...19,040,438 JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,784,396...1,794,269
Ensembl chrNW_004936694:1,784,480...1,793,481 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:610,478...616,529
Ensembl chrNW_004936720:610,478...616,546 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:1,180,069...1,192,227
Ensembl chrNW_004936486:1,180,069...1,190,117 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23055939) Ensembl
MGI		 PMID:23055939 GO_REF:0000107 NCBI chrNW_004936668:1,523,232...1,668,591
Ensembl chrNW_004936668:1,525,289...1,562,064 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:3,077,940...3,095,985
Ensembl chrNW_004936510:3,077,892...3,095,832 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21470964) Ensembl
MGI		 PMID:21470964 GO_REF:0000107 NCBI chrNW_004936594:1,775,412...1,778,389
Ensembl chrNW_004936594:1,777,376...1,778,164 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23132731) MGI
Ensembl		 PMID:23132731 GO_REF:0000107 NCBI chrNW_004936530:3,086,944...3,092,780
Ensembl chrNW_004936530:3,086,680...3,092,828 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,691,872...18,749,217
Ensembl chrNW_004936474:18,691,835...18,749,235 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,381,107...14,411,931
Ensembl chrNW_004936491:14,380,195...14,411,868 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,949,820...3,970,462
Ensembl chrNW_004936578:3,949,820...3,970,462 		JBrowse link
G Wtap WT1 associated protein involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936489:11,222,513...11,249,432
Ensembl chrNW_004936489:11,227,156...11,249,818 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29799838) Ensembl
MGI
TreeGrafter		 PMID:29799838 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936582:130,593...161,275
Ensembl chrNW_004936582:126,736...161,586 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,310,975...2,321,790
Ensembl chrNW_004936588:2,311,727...2,321,372 		JBrowse link
regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19224921) Ensembl
MGI		 PMID:19224921 GO_REF:0000107 NCBI chrNW_004936704:1,438,781...1,477,541
Ensembl chrNW_004936704:1,438,781...1,478,075 		JBrowse link
G Cdk9 cyclin dependent kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) UniProt PMID:28383716 NCBI chrNW_004936483:17,216,288...17,296,430
Ensembl chrNW_004936483:17,216,213...17,294,534 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737
Ensembl chrNW_004936495:12,045,377...12,051,536 		JBrowse link
regulation of mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Hdac7 histone deacetylase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:5,680,564...5,701,182
Ensembl chrNW_004936512:5,682,490...5,697,869 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,766,699...43,805,919
Ensembl chrNW_004936469:43,766,663...43,808,333 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,475,676...13,487,617
Ensembl chrNW_004936501:13,474,735...13,489,341 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:7,823,644...7,832,170
Ensembl chrNW_004936522:7,823,646...7,832,944 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 ISO RGD PMID:12124753 RGD:708602 NCBI chrNW_004936494:1,720,030...1,853,177
Ensembl chrNW_004936494:1,717,268...1,853,430 		JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18729827) Ensembl
MGI
TreeGrafter
InterPro		 PMID:18729827 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:4,135,854...4,164,991
Ensembl chrNW_004936549:4,135,811...4,165,009 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936867:666,208...667,851
Ensembl chrNW_004936867:666,199...667,828 		JBrowse link
G Safb scaffold attachment factor B involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:9671816 GO_REF:0000118 RGD:634000 NCBI chrNW_004936588:3,225,315...3,253,689
Ensembl chrNW_004936588:3,225,752...3,253,678 		JBrowse link
G Sltm SAFB like transcription modulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:20,038,137...20,082,410
Ensembl chrNW_004936471:20,039,081...20,081,721 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:23,407,226...23,476,203
Ensembl chrNW_004936476:23,407,226...23,476,579 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:18,541,167...18,675,039
Ensembl chrNW_004936479:18,541,248...18,670,914 		JBrowse link
G Srpk3 SRSF protein kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936809:661,264...666,198
Ensembl chrNW_004936809:661,264...666,188 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,878,645...4,910,613
Ensembl chrNW_004936538:4,878,662...4,910,597 		JBrowse link
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,760,924...1,771,022
Ensembl chrNW_004936594:1,760,853...1,770,765 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936474:15,088,815...15,131,048
Ensembl chrNW_004936474:15,088,816...15,118,310 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936476:2,469,396...3,001,997
Ensembl chrNW_004936476:2,469,349...3,000,993 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936470:14,232,114...14,403,910
Ensembl chrNW_004936470:14,239,841...14,403,916 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936563:3,455,205...3,474,955
Ensembl chrNW_004936563:3,455,045...3,475,417 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine NOT|involved_in ISO (MGI:6114846|PMID:29262316)
(PMID:28525753)		 UniProt PMID:28525753 PMID:29262316 MGI:6114846 NCBI chrNW_004936538:8,470,057...8,541,620
Ensembl chrNW_004936538:8,471,233...8,538,136 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,472,170...1,652,314
Ensembl chrNW_004936486:1,472,227...1,653,209 		JBrowse link
G Rbm23 RNA binding motif protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936722:1,389,534...1,402,487
Ensembl chrNW_004936722:1,397,697...1,401,372 		JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,099,052...5,149,947
Ensembl chrNW_004936561:5,099,580...5,128,134 		JBrowse link
G Sf1 splicing factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,533,664...4,546,857
Ensembl chrNW_004936599:4,533,795...4,546,853 		JBrowse link
G Son SON DNA and RNA binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936500:8,721,155...8,752,906
Ensembl chrNW_004936500:8,722,087...8,752,844 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:9,573,015...9,602,229
Ensembl chrNW_004936474:9,572,974...9,602,229 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:9,068,012...9,079,717
Ensembl chrNW_004936474:9,066,103...9,079,780 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:26876937), (PMID:32440474) UniProt PMID:26876937 PMID:32440474 NCBI chrNW_004936476:22,790,411...22,799,498
Ensembl chrNW_004936476:22,790,411...22,799,452 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,381,107...14,411,931
Ensembl chrNW_004936491:14,380,195...14,411,868 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:130,593...161,275
Ensembl chrNW_004936582:126,736...161,586 		JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:328,077...351,323
Ensembl chrNW_004936485:327,835...350,132 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,968,032...1,980,789
Ensembl chrNW_004936727:1,968,094...1,980,785 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:1,819,656...1,865,858
Ensembl chrNW_004936556:1,820,645...1,866,131 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936494:12,717,358...12,737,019
Ensembl chrNW_004936494:12,717,268...12,740,193 		JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936508:12,441,742...12,447,597 JBrowse link
G LOC101973672 gem-associated protein 6-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936675:352,324...353,554 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,639,919...1,672,143
Ensembl chrNW_004936529:1,639,880...1,672,282 		JBrowse link
G Scaf11 SR-related CTD associated factor 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:4,209,231...4,286,227
Ensembl chrNW_004936512:4,206,825...4,251,269 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:1,335,143...1,342,573
Ensembl chrNW_004936588:1,335,166...1,342,575 		JBrowse link
G Sf3b1 splicing factor 3b subunit 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936506:1,749,591...1,790,860
Ensembl chrNW_004936506:1,749,563...1,791,739 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:23,407,226...23,476,203
Ensembl chrNW_004936476:23,407,226...23,476,579 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936479:18,541,167...18,675,039
Ensembl chrNW_004936479:18,541,248...18,670,914 		JBrowse link
G Srpk3 SRSF protein kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936809:661,264...666,198
Ensembl chrNW_004936809:661,264...666,188 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936712:1,625,429...1,661,561
Ensembl chrNW_004936712:1,625,802...1,661,533 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:5,233,798...5,258,266
Ensembl chrNW_004936470:5,233,740...5,258,266 		JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx8 DEAH-box helicase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936541:85,273...122,161
Ensembl chrNW_004936541:85,252...123,040 		JBrowse link
G Dnajc17 DnaJ heat shock protein family (Hsp40) member C17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:4,177,636...4,200,873
Ensembl chrNW_004936471:4,177,623...4,200,879 		JBrowse link
G Tfip11 tuftelin interacting protein 11 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936657:1,112,662...1,128,510
Ensembl chrNW_004936657:1,112,682...1,128,530 		JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936498:6,239,866...6,265,743 JBrowse link
G Coil coilin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:5,950,215...5,968,772
Ensembl chrNW_004936490:5,950,034...5,962,095 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936690:400,563...413,488
Ensembl chrNW_004936690:400,596...413,530 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936494:12,717,358...12,737,019
Ensembl chrNW_004936494:12,717,268...12,740,193 		JBrowse link
G Gemin4 gem nuclear organelle associated protein 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,033,354...7,040,178
Ensembl chrNW_004936538:7,004,175...7,043,459 		JBrowse link
G Gemin5 gem nuclear organelle associated protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936515:7,923,113...7,971,507
Ensembl chrNW_004936515:7,922,852...7,970,925 		JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:12,441,742...12,447,597 JBrowse link
G Gemin7 gem nuclear organelle associated protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:1,629,738...1,638,997
Ensembl chrNW_004936706:1,629,746...1,639,024 		JBrowse link
G Gemin8 gem nuclear organelle associated protein 8 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:3,553,462...3,576,281
Ensembl chrNW_004936470:3,553,468...3,576,314 		JBrowse link
G LOC101973672 gem-associated protein 6-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936675:352,324...353,554 JBrowse link
G LOC101973962 small nuclear ribonucleoprotein E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936715:1,359,528...1,359,972 JBrowse link
G LOC110597639 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936482:7,766,607...7,766,869 JBrowse link
G LOC110598504 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936471:37,088,095...37,088,504 JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:2,903,363...2,916,629
Ensembl chrNW_004936596:2,903,358...2,916,629 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,379,515...1,388,538
Ensembl chrNW_004936722:1,379,515...1,388,546 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936475:18,632,022...18,667,515
Ensembl chrNW_004936475:18,632,052...18,672,247 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:8,379,386...8,418,963
Ensembl chrNW_004936534:8,382,485...8,418,938 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT|involved_in ISO
IEA		 (PMID:15314151) UniProt
Ensembl		 PMID:15314151 GO_REF:0000107 NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:16,142,231...16,161,761
Ensembl chrNW_004936485:16,157,485...16,163,698 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936550:1,323,351...1,335,074
Ensembl chrNW_004936550:1,323,378...1,335,069 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:2,065,315...2,068,709
Ensembl chrNW_004936706:2,065,419...2,067,487 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936567:849,300...855,214
Ensembl chrNW_004936567:849,397...855,187 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936507:11,973,818...11,980,370
Ensembl chrNW_004936507:11,973,564...11,982,283 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936491:14,442,904...14,450,717
Ensembl chrNW_004936491:14,443,026...14,450,631 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936587:1,679,570...1,700,610
Ensembl chrNW_004936587:1,678,439...1,701,216 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) CACAO PMID:28263986 MGI:5904379 NCBI chrNW_004936476:13,646,678...13,660,891
Ensembl chrNW_004936476:13,644,627...13,660,839 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:35188580) UniProt PMID:35188580 NCBI chrNW_004936794:672,123...673,703 JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936561:4,709,351...4,729,849
Ensembl chrNW_004936561:4,709,402...4,729,907 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10523320) MGI
Ensembl		 PMID:10523320 GO_REF:0000107 NCBI chrNW_004936727:1,746,072...1,751,944
Ensembl chrNW_004936727:1,745,942...1,751,959 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:8,379,386...8,418,963
Ensembl chrNW_004936534:8,382,485...8,418,938 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:604,709...632,788
Ensembl chrNW_004936580:605,138...633,104 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11867543) MGI
InterPro
Ensembl		 PMID:11867543 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936994:239,688...252,269
Ensembl chrNW_004936994:239,682...252,317 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:11,175,410...11,220,928
Ensembl chrNW_004936514:11,175,526...11,220,241 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,780,022...7,814,575
Ensembl chrNW_004936538:7,780,022...7,814,575 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:34131137) UniProt PMID:34131137 NCBI chrNW_004936794:672,123...673,703 JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:941,042...989,781
Ensembl chrNW_004936529:938,501...989,884 		JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101960245 U5 small nuclear ribonucleoprotein 200 kDa helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936744:365,974...393,264
Ensembl chrNW_004936744:366,303...393,229 		JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx42 DEAD-box helicase 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:4,418,743...4,462,513
Ensembl chrNW_004936541:4,429,657...4,465,099 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:10,762,417...10,779,641
Ensembl chrNW_004936513:10,762,398...10,779,374 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,335,143...1,342,573
Ensembl chrNW_004936588:1,335,166...1,342,575 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:20,092,159...20,116,612
Ensembl chrNW_004936474:20,091,359...20,116,746 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    metabolic process 9527
      biosynthetic process 6618
        organic substance biosynthetic process 6557
          macromolecule biosynthetic process 5732
            gene expression 5323
              RNA processing 832
                mRNA processing 384
                  7-methylguanosine mRNA capping 6
                  chloroplast mRNA processing 0
                  mRNA 3'-end processing + 41
                  mRNA splicing, via endonucleolytic cleavage and ligation 1
                  mRNA splicing, via spliceosome + 290
                  mitochondrial mRNA processing + 1
                  negative regulation of mRNA processing + 23
                  polycistronic mRNA processing + 0
                  positive regulation of mRNA processing + 35
                  regulation of mRNA processing + 130
Path 2
Term Annotations click to browse term
  biological_process 15871
    metabolic process 9527
      cellular metabolic process 8291
        heterocycle metabolic process 4795
          nucleobase-containing compound metabolic process 4641
            nucleic acid metabolic process 4163
              RNA metabolic process 3641
                RNA processing 832
                  mRNA processing 384
                    7-methylguanosine mRNA capping 6
                    chloroplast mRNA processing 0
                    mRNA 3'-end processing + 41
                    mRNA splicing, via endonucleolytic cleavage and ligation 1
                    mRNA splicing, via spliceosome + 290
                    mitochondrial mRNA processing + 1
                    negative regulation of mRNA processing + 23
                    polycistronic mRNA processing + 0
                    positive regulation of mRNA processing + 35
                    regulation of mRNA processing + 130
paths to the root