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ONTOLOGY REPORT - ANNOTATIONS


Term:mitochondrial transcription
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Accession:GO:0006390 term browser browse the term
Definition:The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase.
Synonyms:exact_synonym: transcription from mitochondrial promoter
 only_in_taxon: NCBITaxon:2759 ! Eukaryota



show annotations for term's descendants           Sort by:
mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo3 forkhead box O3 involved_in ISO (PMID:29445193)
(MGI:6120139|PMID:23283301)
RGD PMID:23283301 PMID:29445193 MGI:6120139 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
JBrowse link
G Mrpl12 mitochondrial ribosomal protein L12 involved_in ISO (PMID:17337445) RGD PMID:17337445 NCBI chr10:105,758,410...105,762,913
Ensembl chr10:105,758,410...105,762,913
JBrowse link
G Mterf3 mitochondrial transcription termination factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:63,826,418...63,844,747
Ensembl chr 7:63,826,427...63,844,658
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2182095|MGI:5288505 (MGI:5287350|PMID:21531335)
GO_REF:0000033
RGD
GO_Central
PMID:21531335 GO_REF:0000033 MGI:5287350 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Polrmt RNA polymerase mitochondrial involved_in ISO
IBA
(PMID:21278163)
GO_REF:0000033
RGD
GO_Central
PMID:21278163 GO_REF:0000033 NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in ISO
IEA
(MGI:3838421|PMID:19252502)
GO_REF:0000107
RGD
Ensembl
PMID:19252502 GO_REF:0000107 MGI:3838421 NCBI chr18:54,758,891...54,861,103
Ensembl chr18:54,758,902...54,861,194
JBrowse link
G Slc25a33 solute carrier family 25 member 33 involved_in ISO (PMID:20453889) RGD PMID:20453889 NCBI chr 5:160,195,040...160,219,961
Ensembl chr 5:160,195,042...160,219,961
JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in ISO
IBA
ISS
(PMID:21278163)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:21278163 GO_REF:0000024 GO_REF:0000033 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
G Tfam transcription factor A, mitochondrial involved_in ISO (PMID:22037171)
(MGI:6115571|PMID:2628167)
RGD PMID:2628167 PMID:22037171 MGI:6115571 NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in ISO (PMID:12068295) RGD PMID:12068295 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
JBrowse link
G Twnk twinkle mtDNA helicase involved_in ISO (PMID:18971204) RGD PMID:18971204 NCBI chr 1:243,867,568...243,874,802
Ensembl chr 1:243,868,330...243,874,802
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in ISO (MGI:5920587|PMID:28585542) RGD PMID:28585542 MGI:5920587 NCBI chr20:12,725,839...12,727,638
Ensembl chr20:12,725,842...12,732,763
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:6120139 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Sirt3 sirtuin 3 involved_in ISO (MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:6120139 NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:32183942) RGD PMID:32183942 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749
JBrowse link
G Mtres1 mitochondrial transcription rescue factor 1 involved_in ISO
IBA
(PMID:31226201)
GO_REF:0000033
RGD
GO_Central
PMID:31226201 GO_REF:0000033 NCBI chr20:47,022,343...47,038,888
Ensembl chr20:47,022,342...47,038,805
JBrowse link
G Thap11 THAP domain containing 11 acts_upstream_of_or_within ISO MGI:3052237|MGI:3797582 (MGI:6507297|PMID:26876175) RGD PMID:26876175 MGI:6507297 NCBI chr19:33,746,977...33,748,794
Ensembl chr19:33,746,854...33,749,540
JBrowse link
termination of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:20550934)
UniProt
GO_Central
TreeGrafter
RGD
PMID:20550934 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684
JBrowse link
transcription elongation by mitochondrial RNA polymerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tefm transcription elongation factor, mitochondrial involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
transcription initiation at mitochondrial promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polrmt RNA polymerase mitochondrial involved_in ISO (PMID:29149603) RGD PMID:29149603 NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Tfam transcription factor A, mitochondrial involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
TreeGrafter
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      primary metabolic process 10285
        nucleobase-containing compound metabolic process 5720
          nucleic acid metabolic process 5123
            RNA metabolic process 4527
              mitochondrial RNA metabolic process 55
                mitochondrial transcription 20
                  positive regulation of mitochondrial transcription 3
                  regulation of mitochondrial transcription + 6
                  termination of mitochondrial transcription 2
                  transcription elongation by mitochondrial RNA polymerase 1
                  transcription initiation at mitochondrial promoter 4
Path 2
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      cellular metabolic process 10286
        cellular aromatic compound metabolic process 5963
          nucleobase-containing compound metabolic process 5720
            nucleic acid metabolic process 5123
              RNA metabolic process 4527
                RNA biosynthetic process 3391
                  DNA-templated transcription 3367
                    mitochondrial transcription 20
                      positive regulation of mitochondrial transcription 3
                      regulation of mitochondrial transcription + 6
                      termination of mitochondrial transcription 2
                      transcription elongation by mitochondrial RNA polymerase 1
                      transcription initiation at mitochondrial promoter 4
paths to the root