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ONTOLOGY REPORT - ANNOTATIONS

Term:termination of RNA polymerase II transcription
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Accession:GO:0006369 term browser browse the term
Definition:A transcription termination process that completes the production of a primary RNA polymerase II transcript.
Synonyms:exact_synonym: RNA 3'-end formation by RNA polymerase II;   RNA polymerase II transcription termination;   transcription termination from Pol II promoter;   transcription termination from RNA polymerase II promoter
 related_synonym: RNA polymerase II transcription termination factor activity
 alt_id: GO:0019224


show annotations for term's descendants           Sort by:
termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drosha drosha ribonuclease III involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688 		JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408 		JBrowse link
G Med18 mediator complex subunit 18 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:144,663,316...144,668,652
Ensembl chr 5:144,663,252...144,668,635 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in ISO
IBA		 (PMID:29196535)
GO_REF:0000033		 RGD
GO_Central		 PMID:29196535 GO_REF:0000033 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Setx senataxin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:22767893)		 GO_Central
RGD		 PMID:22767893 GO_REF:0000033 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf4 SR-related CTD-associated factor 4 involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:31104839)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 UniProt
RGD
Ensembl
TreeGrafter
GO_Central		 PMID:31104839 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISO
ISS
IEA		 (PMID:31104839)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
positive regulation of termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:29196535)		 Ensembl
UniProt
RGD		 PMID:29196535 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:153,128,334...153,253,905
Ensembl chr 4:153,128,334...153,253,905 		JBrowse link
positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin involved_in ISO (PMID:21700224) RGD PMID:21700224 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          macromolecule biosynthetic process 7463
            RNA biosynthetic process 3411
              DNA-templated transcription termination 25
                termination of RNA polymerase II transcription 10
                  negative regulation of termination of RNA polymerase II transcription + 2
                  positive regulation of termination of RNA polymerase II transcription + 2
                  regulation of termination of RNA polymerase II transcription + 4
                  termination of RNA polymerase II transcription, exosome-dependent 0
                  termination of RNA polymerase II transcription, poly(A)-coupled + 3
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              nucleic acid biosynthetic process 3542
                RNA biosynthetic process 3411
                  DNA-templated transcription 3388
                    DNA-templated transcription termination 25
                      termination of RNA polymerase II transcription 10
                        negative regulation of termination of RNA polymerase II transcription + 2
                        positive regulation of termination of RNA polymerase II transcription + 2
                        regulation of termination of RNA polymerase II transcription + 4
                        termination of RNA polymerase II transcription, exosome-dependent 0
                        termination of RNA polymerase II transcription, poly(A)-coupled + 3
paths to the root