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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription by RNA polymerase I
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Accession:GO:0006360 term browser browse the term
Definition:The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
Synonyms:exact_synonym: transcription from Pol I promoter;   transcription from RNA polymerase I promoter
 related_synonym: RNA polymerase I transcription factor activity
 xref: Reactome:R-HSA-73864 "RNA Polymerase I Transcription"



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transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC109542.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:196,570,210...196,573,077 JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha involved_in ISO
ISS
(PMID:20075868)
GO_REF:0000024
RGD
UniProt
PMID:20075868 GO_REF:0000024 NCBI chr 1:96,896,584...96,899,256
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G LOC120098305 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:1,257,666...1,258,121
Ensembl chr18:1,257,666...1,258,121
JBrowse link
G Polr1a RNA polymerase I subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:105,508,305...105,572,272
Ensembl chr 4:103,950,051...104,014,020
JBrowse link
G Polr1b RNA polymerase I subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:136,787,130...136,811,608
Ensembl chr 3:116,333,889...116,358,379
JBrowse link
G Polr1c RNA polymerase I and III subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:22,233,318...22,237,430
Ensembl chr 9:14,735,714...14,739,852
JBrowse link
G Polr2a RNA polymerase II subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
JBrowse link
G Polr2b RNA polymerase II subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:30,797,228...30,834,916
Ensembl chr14:30,797,228...30,834,916
JBrowse link
G Polr2f RNA polymerase II, I and III subunit F involved_in TAS
IBA
GO_REF:0000033 GO_Central
RGD
PMID:10393248 GO_REF:0000033, RGD:1299534 NCBI chr 7:112,592,977...112,604,681
Ensembl chr 7:110,712,572...110,724,234
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
Ensembl chr10:80,192,032...80,197,515
JBrowse link
G Polr2k RNA polymerase II, I and III subunit K involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:69,241,233...69,244,579
Ensembl chr 7:67,356,113...67,357,668
JBrowse link
G Polr2l RNA polymerase II, I and III subunit L involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:196,570,051...196,572,060
Ensembl chr19:8,335,702...8,335,905
JBrowse link
G Polr2sl1 RNA polymerase II, I and III subunit like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:5,743,067...5,743,270
Ensembl chr 4:5,743,067...5,743,270
JBrowse link
G Polr3a RNA polymerase III subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:56,066...95,060
Ensembl chr16:49,521...88,172
JBrowse link
G Polr3b RNA polymerase III subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:20,926,866...21,030,133
Ensembl chr 7:19,038,552...19,142,598
JBrowse link
G Polrmt RNA polymerase mitochondrial involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:10,610,149...10,620,411
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,531,495...97,549,616
Ensembl chr 1:97,531,508...97,549,581
JBrowse link
G Taf1a TATA-box binding protein associated factor, RNA polymerase I subunit A involved_in IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr13:97,543,772...97,579,742
Ensembl chr13:95,029,225...95,048,087
JBrowse link
G Ttf1 transcription termination factor 1 involved_in ISO (PMID:20513429) RGD PMID:20513429 NCBI chr 3:32,782,544...32,807,202
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
G Ubtf upstream binding transcription factor involved_in ISO
IBA
(PMID:28777933)
GO_REF:0000033
RGD
GO_Central
PMID:28777933 GO_REF:0000033 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link
G Ubtfl2 upstream binding transcription factor like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:16,073,983...16,075,170
Ensembl chr 8:16,073,983...16,075,170
JBrowse link
negative regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (PMID:12368916) RGD PMID:12368916 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Crebbp CREB binding protein involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:30540930)
UniProt
Ensembl
RGD
PMID:30540930 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Flna filamin A involved_in ISO (PMID:22307607) RGD PMID:22307607 NCBI chr  X:157,159,051...157,185,559
Ensembl chr  X:152,007,758...152,031,052
JBrowse link
G Maf1 MAF1 homolog, negative regulator of RNA polymerase III involved_in ISO
IEA
(PMID:17499043)
GO_REF:0000107
RGD
Ensembl
PMID:17499043 GO_REF:0000107 NCBI chr 7:109,955,876...109,958,909
Ensembl chr 7:108,075,189...108,078,249
JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 involved_in ISO (PMID:12368916) RGD PMID:12368916 NCBI chr19:44,172,465...44,208,967
Ensembl chr19:27,271,148...27,304,594
JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain-containing acts_upstream_of_or_within ISO (PMID:9774341) RGD PMID:9774341 NCBI chr13:86,286,341...86,301,789
Ensembl chr13:83,756,108...83,769,332
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO
IBA
UniProtKB:Q9P0M6 (PMID:24071584)
GO_REF:0000033
RGD
GO_Central
PMID:24071584 GO_REF:0000033 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO
IBA
UniProtKB:P0C0S8 (PMID:24071584)
GO_REF:0000033
RGD
GO_Central
PMID:24071584 GO_REF:0000033 NCBI chr20:30,220,975...30,270,652
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) RGD PMID:27729611 NCBI chr 1:85,757,271...85,765,089
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:24207024) RGD PMID:24207024 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:46,845,571...46,923,209
Ensembl chr 6:41,117,420...41,194,593
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2386185 (PMID:15249688)
GO_Central
RGD
PMID:15249688 GO_REF:0000033 NCBI chr18:56,537,437...56,570,727
Ensembl chr18:54,267,026...54,300,324
JBrowse link
positive regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO (PMID:22915762) RGD PMID:22915762 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Bnc1 basonuclin zinc finger protein 1 involved_in ISO (PMID:11152639) RGD PMID:11152639 NCBI chr 1:145,326,881...145,352,534
Ensembl chr 1:135,917,687...135,943,333
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in ISO (PMID:15471871) RGD PMID:15471871 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Dhx33 DEAH-box helicase 33 involved_in ISO
IBA
(PMID:21930779)
GO_REF:0000033
RGD
GO_Central
PMID:21930779 GO_REF:0000033 NCBI chr10:56,206,680...56,223,189
Ensembl chr10:55,705,756...55,724,567
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:22915762) RGD PMID:22915762 NCBI chr 4:104,363,838...104,425,271
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 involved_in ISO
ISS
IEA
(PMID:21555369)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:21555369 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,907,491...83,931,365
Ensembl chr10:83,411,313...83,435,078
JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO
IBA
(PMID:17699751)
GO_REF:0000033
RGD
GO_Central
PMID:17699751 GO_REF:0000033 NCBI chr17:62,745,008...62,785,609
Ensembl chr17:58,051,700...58,093,948
JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO
GO_REF:0000107
(PMID:31504794)
Ensembl
RGD
PMID:31504794 GO_REF:0000107 NCBI chr14:76,789,193...76,802,973
Ensembl chr14:72,576,879...72,590,612
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A involved_in ISO (PMID:14635196) RGD PMID:14635196 NCBI chr 1:105,136,521...105,139,596
Ensembl chr 1:96,000,058...96,003,171
JBrowse link
G Rasl11a RAS-like family 11 member A involved_in ISS
ISO
GO_REF:0000024
(PMID:20168301)
UniProt
RGD
PMID:20168301 GO_REF:0000024 NCBI chr12:13,372,023...13,374,784
Ensembl chr12:8,258,159...8,262,576
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:30540930)
UniProt
RGD
PMID:30540930 GO_REF:0000024 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20168301)
UniProt
GO_Central
RGD
PMID:20168301 GO_REF:0000024 GO_REF:0000033 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link
G Ubtfl2 upstream binding transcription factor like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:16,073,983...16,075,170
Ensembl chr 8:16,073,983...16,075,170
JBrowse link
G Utp15 UTP15, small subunit processome component involved_in ISO
IBA
(PMID:17699751)
GO_REF:0000033
RGD
GO_Central
PMID:17699751 GO_REF:0000033 NCBI chr 2:31,329,222...31,347,022
Ensembl chr 2:29,594,941...29,612,773
JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:29,565,610...29,604,954
Ensembl chr 6:23,845,499...23,884,846
JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO
IBA
(PMID:17699751)
GO_REF:0000033
RGD
GO_Central
PMID:17699751 GO_REF:0000033 NCBI chr 9:55,395,232...55,425,412
Ensembl chr 9:47,903,200...47,933,399
JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:113,204,886...113,309,692
Ensembl chr 9:105,833,504...105,862,550
JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO
IEA
(PMID:23203802)
GO_REF:0000107
RGD
Ensembl
PMID:23203802 GO_REF:0000107 NCBI chr17:15,396,691...15,441,648
Ensembl chr17:15,190,265...15,229,541
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:65,006,456...65,023,880
Ensembl chr 7:63,121,142...63,138,495
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:24036451)
GO_REF:0000107
RGD
Ensembl
PMID:24036451 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Ncl nucleolin involved_in ISO
IEA
(PMID:24071584)
GO_REF:0000107
RGD
Ensembl
PMID:24071584 GO_REF:0000107 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:92,621,482...92,641,394
Ensembl chr10:92,121,833...92,141,677
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283 PMID:24036451 NCBI chr 1:104,774,562...104,781,757
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:19,870,465...19,886,463
Ensembl chr 7:17,982,235...17,998,731
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO
IEA
(PMID:22368283)
GO_REF:0000107
RGD
Ensembl
PMID:22368283 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620
JBrowse link
regulation of termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:20961378) RGD PMID:20961378 NCBI chr 5:139,912,395...139,945,532
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnc1 basonuclin zinc finger protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:16624857)
GO_Central
RGD
PMID:16624857 GO_REF:0000033 NCBI chr 1:145,326,881...145,352,534
Ensembl chr 1:135,917,687...135,943,333
JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in ISO
IMP
(PMID:27458189) RGD PMID:27458189 PMID:27458189 RGD:13702279 NCBI chr17:9,170,405...9,178,814
Ensembl chr17:9,165,269...9,172,536
JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO
ISS
(PMID:24207024)
GO_REF:0000024
RGD
UniProt
PMID:24207024 GO_REF:0000024 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:8641287)
GO_Central
RGD
PMID:8641287 GO_REF:0000033 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:2,637,016...2,672,338
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
IEA
ISS
(PMID:21921199)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21921199 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:46,845,571...46,923,209
Ensembl chr 6:41,117,420...41,194,593
JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971
JBrowse link
G Tbp TATA box binding protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link
G Ubtfl2 upstream binding transcription factor like 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:16,073,983...16,075,170
Ensembl chr 8:16,073,983...16,075,170
JBrowse link
termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
PMID:9582279
(PMID:10589839), (PMID:9582279)
(PMID:9582279)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:9582279 PMID:10589839 PMID:9582279 GO_REF:0000024 GO_REF:0000033, RGD:8554461 NCBI chr10:86,384,401...86,398,240
Ensembl chr10:85,889,036...85,896,120
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:90,093,433...90,112,117
Ensembl chr 1:80,965,627...80,984,310
JBrowse link
G Polr1h RNA polymerase I subunit H involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854
JBrowse link
G Ttf1 transcription termination factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:10589839)
(PMID:7720715)
GO_Central
RGD
PMID:7720715 PMID:10589839 GO_REF:0000033 NCBI chr 3:32,782,544...32,807,202
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:88,161,342...88,175,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr18:24,157,831...24,188,543
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:23562818) RGD PMID:23562818 NCBI chr16:7,771,311...7,841,895
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:49,061,904...49,068,612
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:55,780,706...55,797,935
Ensembl chr 6:50,053,289...50,070,514
JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:9,666,716...9,670,643
JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link
transcription initiation at RNA polymerase I promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in ISS
ISO
IBA
PMID:9582279
(PMID:11139612)
GO_REF:0000033
(PMID:9582279)
RGD
GO_Central
PMID:9582279 PMID:11139612 PMID:9582279 GO_REF:0000033, RGD:8554461 NCBI chr10:86,384,401...86,398,240
Ensembl chr10:85,889,036...85,896,120
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:90,093,433...90,112,117
Ensembl chr 1:80,965,627...80,984,310
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:16809778) RGD PMID:16809778 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Polr1g RNA polymerase I subunit G involved_in ISO (PMID:16809778) RGD PMID:16809778 NCBI chr 1:88,135,493...88,138,769
Ensembl chr 1:79,007,490...79,010,766
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:11250903)
GO_REF:0000033
MGI:3584037 (PMID:15989966)
RGD
GO_Central
PMID:11250903 PMID:15989966 GO_REF:0000033 NCBI chr10:2,637,016...2,672,338
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO UniProtKB:P17480|UniProtKB:Q15572 (PMID:12498690) RGD PMID:12498690 NCBI chr  X:70,680,901...70,756,535
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (PMID:7720715) RGD PMID:7720715 NCBI chr 3:32,782,544...32,807,202
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:12498690), (PMID:16809778), (PMID:16858408)
UniProt
RGD
PMID:12498690 PMID:16809778 PMID:16858408 GO_REF:0000024 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        biosynthetic process 8648
          macromolecule biosynthetic process 7672
            gene expression 7233
              DNA-templated transcription 3627
                transcription by RNA polymerase I 75
                  RNA polymerase I promoter clearance 0
                  negative regulation of transcription by RNA polymerase I + 9
                  nucleolar large rRNA transcription by RNA polymerase I + 25
                  positive regulation of transcription by RNA polymerase I + 27
                  regulation of transcription by RNA polymerase I + 38
                  termination of RNA polymerase I transcription + 5
                  transcription initiation at RNA polymerase I promoter + 15
Path 2
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        primary metabolic process 10757
          nucleobase-containing compound metabolic process 5951
            nucleic acid metabolic process 5334
              RNA metabolic process 4751
                RNA biosynthetic process 4467
                  DNA-templated transcription 3627
                    transcription by RNA polymerase I 75
                      RNA polymerase I promoter clearance 0
                      negative regulation of transcription by RNA polymerase I + 9
                      nucleolar large rRNA transcription by RNA polymerase I + 25
                      positive regulation of transcription by RNA polymerase I + 27
                      regulation of transcription by RNA polymerase I + 38
                      termination of RNA polymerase I transcription + 5
                      transcription initiation at RNA polymerase I promoter + 15
paths to the root