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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of transcription by RNA polymerase I
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Accession:GO:0006356 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase I.
Synonyms:exact_synonym: regulation of transcription from Pol I promoter;   regulation of transcription from RNA polymerase I promoter


show annotations for term's descendants           Sort by:
regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnc1 basonuclin zinc finger protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:16624857)		 GO_Central
RGD		 PMID:16624857 GO_REF:0000033 NCBI chr 1:135,917,676...135,943,333
Ensembl chr 1:135,917,687...135,943,333 		JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in ISO
IMP		 (PMID:27458189) RGD PMID:27458189 PMID:27458189 RGD:13702279 NCBI chr17:9,164,375...9,173,669
Ensembl chr17:9,165,269...9,172,536 		JBrowse link
negative regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Crebbp CREB binding protein involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30540930)		 UniProt
Ensembl
RGD		 PMID:30540930 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Flna filamin A involved_in ISO (PMID:22307607) RGD PMID:22307607 NCBI chr  X:152,007,758...152,034,266
Ensembl chr  X:152,007,758...152,031,052 		JBrowse link
G Maf1 MAF1 homolog, negative regulator of RNA polymerase III involved_in ISO
IEA		 (PMID:17499043)
GO_REF:0000107		 RGD
Ensembl		 PMID:17499043 GO_REF:0000107 NCBI chr 7:108,075,173...108,078,252
Ensembl chr 7:108,075,189...108,078,249 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain-containing acts_upstream_of_or_within ISO (PMID:9774341) RGD PMID:9774341 NCBI chr13:83,755,874...83,769,982
Ensembl chr13:83,756,108...83,769,332 		JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO
IBA		 UniProtKB:Q9P0M6 (PMID:24071584)
GO_REF:0000033
(MGI:5559643|PMID:24071584)		 RGD
GO_Central		 PMID:24071584 GO_REF:0000033 MGI:5559643 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO
IBA		 UniProtKB:P0C0S8 (PMID:24071584)
GO_REF:0000033		 RGD
GO_Central		 PMID:24071584 GO_REF:0000033 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) RGD PMID:27729611 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902 		JBrowse link
positive regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO (PMID:22915762) RGD PMID:22915762 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Bnc1 basonuclin zinc finger protein 1 involved_in ISO (PMID:11152639) RGD PMID:11152639 NCBI chr 1:135,917,676...135,943,333
Ensembl chr 1:135,917,687...135,943,333 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in ISO (PMID:15471871) RGD PMID:15471871 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Dhx33 DEAH-box helicase 33 involved_in ISO
IBA		 (PMID:21930779)
GO_REF:0000033
(MGI:5300123|PMID:21930779)		 RGD
GO_Central		 PMID:21930779 GO_REF:0000033 MGI:5300123 NCBI chr10:55,708,102...55,724,618
Ensembl chr10:55,705,756...55,724,567 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:22915762)
(MGI:5607215|PMID:22915762)		 RGD PMID:22915762 MGI:5607215 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 involved_in ISO
ISS
IEA		 (PMID:21555369)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:21555369 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO		 GO_REF:0000107
(PMID:31504794)		 Ensembl
RGD		 PMID:31504794 GO_REF:0000107 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A involved_in ISO (MGI:5751679|PMID:14635196) RGD PMID:14635196 MGI:5751679 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171 		JBrowse link
G Rasl11a RAS-like family 11 member A involved_in ISS
ISO		 GO_REF:0000024
(MGI:4441017|PMID:20168301)		 UniProt
RGD		 PMID:20168301 GO_REF:0000024 MGI:4441017 NCBI chr12:8,258,148...8,260,909
Ensembl chr12:8,258,159...8,262,576 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30540930)		 UniProt
RGD		 PMID:30540930 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(MGI:4441017|PMID:20168301)		 UniProt
GO_Central
RGD		 PMID:20168301 GO_REF:0000024 GO_REF:0000033 MGI:4441017 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
G Utp15 UTP15, small subunit processome component involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO
IEA		 (PMID:23203802)
GO_REF:0000107		 RGD
Ensembl		 PMID:23203802 GO_REF:0000107 NCBI chr17:15,190,191...15,235,203
Ensembl chr17:15,190,265...15,229,541 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:63,121,142...63,138,550
Ensembl chr 7:63,121,142...63,138,495 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA		 (PMID:24036451)
GO_REF:0000107		 RGD
Ensembl		 PMID:24036451 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Ncl nucleolin involved_in ISO
IEA		 (PMID:24071584)
GO_REF:0000107		 RGD
Ensembl		 PMID:24071584 GO_REF:0000107 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283 PMID:24036451 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA		 (PMID:22368283)
GO_REF:0000107		 RGD
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
regulation of termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:20961378) RGD PMID:20961378 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO
ISS		 (PMID:24207024)
GO_REF:0000024		 RGD
UniProt		 PMID:24207024 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12288
      macromolecule metabolic process 10146
        macromolecule biosynthetic process 7442
          gene expression 7001
            DNA-templated transcription 3497
              regulation of DNA-templated transcription 3332
                regulation of transcription by RNA polymerase I 37
                  negative regulation of transcription by RNA polymerase I + 9
                  positive regulation of transcription by RNA polymerase I + 26
                  regulation of termination of RNA polymerase I transcription + 1
                  regulation of transcription initiation by RNA polymerase I 0
                  regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12288
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleic acid metabolic process 5148
            RNA metabolic process 4578
              RNA biosynthetic process 4308
                DNA-templated transcription 3497
                  regulation of DNA-templated transcription 3332
                    regulation of transcription by RNA polymerase I 37
                      negative regulation of transcription by RNA polymerase I + 9
                      positive regulation of transcription by RNA polymerase I + 26
                      regulation of termination of RNA polymerase I transcription + 1
                      regulation of transcription initiation by RNA polymerase I 0
                      regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
paths to the root