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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-templated transcription termination
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Accession:GO:0006353 term browser browse the term
Definition:The completion of transcription: the RNA polymerase pauses, the RNA-DNA hybrid dissociates, followed by the release of the RNA polymerase from its DNA template.
Synonyms:exact_synonym: termination of DNA-dependent transcription
 narrow_synonym: transcription termination from bacterial-type RNA polymerase promoter
 broad_synonym: transcriptional complex disassembly
 related_synonym: transcription termination factor activity;   transcription termination, DNA-dependent
 alt_id: GO:0001125



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DNA-templated transcription termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G ENSRNOG00000063939 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr15:43,363,981...43,364,769 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20550934)
UniProt
RGD
PMID:20550934 GO_REF:0000024 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
G Polr2a RNA polymerase II subunit A involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Setx senataxin involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
ISO
GO_REF:0000024
(PMID:26700805)
UniProt
RGD
PMID:26700805 GO_REF:0000024 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Wdr82 WD repeat domain 82 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
JBrowse link
negative regulation of termination of DNA-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Per2 period circadian regulator 2 involved_in ISO (MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:5430667 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
JBrowse link
negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf4 SR-related CTD-associated factor 4 involved_in ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:31104839)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
UniProt
RGD
Ensembl
TreeGrafter
GO_Central
PMID:31104839 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISO
ISS
IEA
(PMID:31104839)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
positive regulation of termination of DNA-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
positive regulation of termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:29196535)
Ensembl
UniProt
RGD
PMID:29196535 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:153,128,334...153,253,905
Ensembl chr 4:153,128,334...153,253,905
JBrowse link
positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin involved_in ISO (PMID:21700224) RGD PMID:21700224 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
regulation of termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
termination of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:20550934)
UniProt
GO_Central
TreeGrafter
RGD
PMID:20550934 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684
JBrowse link
termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in
acts_upstream_of_or_within
ISS
IBA
IEA
ISO
PMID:9582279
GO_REF:0000033
GO_REF:0000118
(MGI:7565909|PMID:10589839)
(MGI:1266983|PMID:9582279)
GO_REF:0000024
(PMID:9582279)
GO_Central
TreeGrafter
RGD
UniProt
PMID:9582279 PMID:10589839 PMID:9582279 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:1266983 MGI:7565909, RGD:8554461 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
JBrowse link
G Polr1h RNA polymerase I subunit H involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854
JBrowse link
G Ttf1 transcription termination factor 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(MGI:7565909|PMID:10589839)
GO_REF:0000033
(MGI:72087|PMID:7720715)
RGD
GO_Central
PMID:7720715 PMID:10589839 GO_REF:0000033 MGI:72087 MGI:7565909 NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drosha drosha ribonuclease III involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408
JBrowse link
G Med18 mediator complex subunit 18 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:144,663,316...144,668,652
Ensembl chr 5:144,663,252...144,668,635
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in ISO
IBA
(PMID:29196535)
GO_REF:0000033
RGD
GO_Central
PMID:29196535 GO_REF:0000033 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
G Setx senataxin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5430667|PMID:22767893)
GO_REF:0000033
RGD
GO_Central
PMID:22767893 GO_REF:0000033 MGI:5430667 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
JBrowse link
termination of RNA polymerase III transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:168,982,846...168,987,043
Ensembl chr 3:168,982,812...168,987,040
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      organic substance metabolic process 11224
        macromolecule metabolic process 9474
          macromolecule biosynthetic process 7361
            RNA biosynthetic process 3391
              DNA-templated transcription termination 25
                negative regulation of termination of DNA-templated transcription + 3
                positive regulation of termination of DNA-templated transcription + 2
                regulation of termination of DNA-templated transcription + 6
                termination of RNA polymerase I transcription + 5
                termination of RNA polymerase II transcription + 10
                termination of RNA polymerase III transcription 1
                termination of mitochondrial transcription 2
                transcription ternary complex disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      cellular metabolic process 10286
        cellular nitrogen compound metabolic process 6742
          nucleobase-containing compound metabolic process 5720
            nucleic acid metabolic process 5123
              RNA metabolic process 4527
                RNA biosynthetic process 3391
                  DNA-templated transcription 3367
                    DNA-templated transcription termination 25
                      negative regulation of termination of DNA-templated transcription + 3
                      positive regulation of termination of DNA-templated transcription + 2
                      regulation of termination of DNA-templated transcription + 6
                      termination of RNA polymerase I transcription + 5
                      termination of RNA polymerase II transcription + 10
                      termination of RNA polymerase III transcription 1
                      termination of mitochondrial transcription 2
                      transcription ternary complex disassembly 0
paths to the root