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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA-templated transcription initiation
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Accession:GO:0006352 term browser browse the term
Definition:The initial step of transcription, consisting of the assembly of the RNA polymerase preinitiation complex (PIC) at a gene promoter, as well as the formation of the first few bonds of the RNA transcript. Transcription initiation includes abortive initiation events, which occur when the first few nucleotides are repeatedly synthesized and then released, and ends when promoter clearance takes place.
Comment:Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms:exact_synonym: DNA-dependent RNA polymerase complex assembly at promoter;   initiation of DNA-dependent transcription
 narrow_synonym: transcription initiation from bacterial-type RNA polymerase promoter
 related_synonym: transcription initiation factor activity;   transcription initiation, DNA-dependent
 alt_id: GO:0001123

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DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624734:213,536...280,816
Ensembl chrNW_004624734:213,895...279,777 		JBrowse link
G Brf2 BRF2 RNA polymerase III transcription initiation factor subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624780:5,752,018...5,757,323
Ensembl chrNW_004624780:5,751,435...5,757,447 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
G LOC101708811 transcription initiation factor TFIID subunit 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624731:39,961,692...39,962,820 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:3306601 RGD:69897 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 involved_in ISO (PMID:10567404) UniProt PMID:10567404 NCBI chrNW_004624842:4,570,758...4,665,517 JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624739:10,905,010...10,916,141
Ensembl chrNW_004624739:10,904,932...10,917,075 		JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624732:14,294,694...14,308,843
Ensembl chrNW_004624732:14,295,113...14,308,826 		JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624926:1,228,590...1,230,943
Ensembl chrNW_004624926:1,228,602...1,230,943 		JBrowse link
G Polr3h RNA polymerase III subunit H involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624752:7,066,057...7,074,251
Ensembl chrNW_004624752:7,066,073...7,074,251 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (PMID:8413268) MGI PMID:8413268 NCBI chrNW_004624824:8,582,754...8,615,073
Ensembl chrNW_004624824:8,582,803...8,614,313 		JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chrNW_004624863:724,646...858,132
Ensembl chrNW_004624863:725,389...858,444 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chrNW_004624848:3,569,744...3,611,104 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:9212049), (PMID:9603525) UniProt PMID:9212049 PMID:9603525 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:12,401,152...12,444,978
Ensembl chrNW_004624764:12,396,938...12,445,681 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:9603525) UniProt PMID:9603525 NCBI chrNW_004624741:27,881,850...27,948,543
Ensembl chrNW_004624741:27,883,183...27,909,304 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:5,955,159...6,163,060
Ensembl chrNW_004624770:6,031,028...6,162,937 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:9603525) UniProt PMID:9603525 NCBI chrNW_004624831:2,608,972...2,625,036
Ensembl chrNW_004624831:2,609,819...2,625,182 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:9603525) UniProt PMID:9603525 NCBI chrNW_004624740:16,877,535...16,883,742
Ensembl chrNW_004624740:16,877,619...16,883,742 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:548,072...550,410
Ensembl chrNW_004624774:548,072...550,404 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Taf9b TATA-box binding protein associated factor 9b involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624836:2,623,924...2,636,330
Ensembl chrNW_004624836:2,623,209...2,635,133 		JBrowse link
G Tbp TATA-box binding protein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624850:6,359,382...6,375,391
Ensembl chrNW_004624850:6,359,418...6,375,391 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624942:819,099...848,240
Ensembl chrNW_004624942:819,106...847,929 		JBrowse link
DNA-templated transcription open complex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:14580349) MGI PMID:14580349 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982 		JBrowse link
negative regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO (PMID:25503965) MGI PMID:25503965 NCBI chrNW_004624731:40,014,713...40,191,395
Ensembl chrNW_004624731:39,984,649...40,191,042 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464 		JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) UniProt PMID:8006019 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) UniProt PMID:8524305 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464 		JBrowse link
negative regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:10692439) BHF-UCL PMID:10692439 NCBI chrNW_004624753:375,163...394,402
Ensembl chrNW_004624753:375,279...384,379 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:29203640) UniProt PMID:29203640 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (MGI:6106288|PMID:29138493) UniProt PMID:29138493 MGI:6106288 NCBI chrNW_004624793:722,743...744,824
Ensembl chrNW_004624793:722,762...744,743 		JBrowse link
G Znf451 zinc finger protein 451 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624753:18,859,416...18,974,016
Ensembl chrNW_004624753:18,884,454...18,975,400 		JBrowse link
G Znf473 zinc finger protein 473 ISO RGD PMID:12748187 RGD:1299608 NCBI chrNW_004624832:4,296,755...4,320,988
Ensembl chrNW_004624832:4,296,664...4,313,707 		JBrowse link
positive regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bclaf1 BCL2 associated transcription factor 1 involved_in ISO (PMID:17938203) UniProt PMID:17938203 NCBI chrNW_004624886:1,394,556...1,424,294
Ensembl chrNW_004624886:1,394,588...1,424,778 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha involved_in ISO (PMID:28186500) UniProt PMID:28186500 NCBI chrNW_004624794:9,809,007...9,813,418 JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,519,054...20,525,311
Ensembl chrNW_004624767:20,519,313...20,524,554 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:23027619) CACAO PMID:23027619 NCBI chrNW_004624862:1,537,886...1,540,633
Ensembl chrNW_004624862:1,538,455...1,539,426 		JBrowse link
G Mitf melanocyte inducing transcription factor involved_in ISO (PMID:12204775), (PMID:8995290) CACAO PMID:8995290 PMID:12204775 NCBI chrNW_004624773:4,346,072...4,561,218
Ensembl chrNW_004624773:4,346,007...4,562,969 		JBrowse link
G Setx senataxin involved_in ISO (PMID:21700224) UniProt PMID:21700224 NCBI chrNW_004624760:3,932,213...4,007,290
Ensembl chrNW_004624760:3,955,494...4,007,610 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17332325) CACAO PMID:17332325 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
positive regulation of gene expression via chromosomal CpG island demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chrNW_004624860:4,912,938...4,927,846
Ensembl chrNW_004624860:4,912,656...4,926,634 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO (PMID:21496894) UniProt PMID:21496894 NCBI chrNW_004624825:4,711,921...4,714,926
Ensembl chrNW_004624825:4,708,093...4,714,921 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chrNW_004624860:4,938,001...4,957,640
Ensembl chrNW_004624860:4,938,001...4,957,236 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:17,689,587...17,700,318
Ensembl chrNW_004624754:17,689,595...17,700,316 		JBrowse link
G Egr1 early growth response 1 involved_in ISO (MGI:6362262|PMID:31467272) ARUK-UCL PMID:31467272 MGI:6362262 NCBI chrNW_004624743:31,247,855...31,251,675
Ensembl chrNW_004624743:31,247,516...31,252,205 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in ISO (PMID:27251462) ARUK-UCL PMID:27251462 NCBI chrNW_004624731:4,383,000...4,388,486
Ensembl chrNW_004624731:4,383,434...4,388,196 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:21496894)
(PMID:24291790)
(PMID:21295276)
(PMID:20639862)
(MGI:6362262|PMID:31467272)
(MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894)		 ARUK-UCL
MGI
UniProt		 PMID:19372391 PMID:20639862 PMID:21295276 PMID:21496894 PMID:24291790 More... MGI:3844762 MGI:5285126 MGI:6362262 NCBI chrNW_004624754:2,846,479...2,966,845
Ensembl chrNW_004624754:2,873,456...2,965,097 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:24315485)
(PMID:20639862)		 ARUK-UCL
MGI		 PMID:20639862 PMID:24315485 NCBI chrNW_004624830:3,446,331...3,543,450
Ensembl chrNW_004624830:3,446,141...3,519,084 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 acts_upstream_of_or_within ISO (PMID:20639862) MGI PMID:20639862 NCBI chrNW_004624749:29,371,674...29,494,785
Ensembl chrNW_004624749:29,371,682...29,493,031 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (PMID:20961378) MGI PMID:20961378 NCBI chrNW_004624764:22,723,643...22,777,517
Ensembl chrNW_004624764:22,723,291...22,778,761 		JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (PMID:8215422) MGI PMID:8215422 NCBI chrNW_004624739:12,939,183...12,987,574
Ensembl chrNW_004624739:12,942,165...12,987,973 		JBrowse link
G Cand1 cullin associated and neddylation dissociated 1 involved_in ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chrNW_004624802:1,010,749...1,049,253
Ensembl chrNW_004624802:1,014,515...1,049,561 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chrNW_004624765:8,374,160...8,436,969 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:21245044) MGI PMID:21245044 NCBI chrNW_004624740:3,785,342...3,875,892
Ensembl chrNW_004624740:3,785,209...3,875,841 		JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:16,386,194...16,414,554
Ensembl chrNW_004624731:16,386,194...16,414,485 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892) Ensembl
MGI		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004624816:3,221,573...3,227,102
Ensembl chrNW_004624816:3,210,828...3,227,096 		JBrowse link
positive regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:21993297) UniProt PMID:21993297 NCBI chrNW_004624730:31,857,157...31,913,985
Ensembl chrNW_004624730:31,855,992...31,914,253 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (PMID:22323595) MGI PMID:22323595 NCBI chrNW_004624907:2,288,380...2,298,909
Ensembl chrNW_004624907:2,288,423...2,298,373 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22323595) Ensembl
MGI		 PMID:22323595 GO_REF:0000107 NCBI chrNW_004624928:458,651...532,201
Ensembl chrNW_004624928:463,279...530,115 		JBrowse link
G Gtf2a1 general transcription factor IIA subunit 1 involved_in ISO (PMID:11030333) ComplexPortal PMID:11030333 NCBI chrNW_004624734:20,795,550...20,830,602
Ensembl chrNW_004624734:20,795,474...20,831,234 		JBrowse link
G Gtf2a2 general transcription factor IIA subunit 2 involved_in ISO (PMID:11030333) ComplexPortal PMID:11030333 NCBI chrNW_004624781:12,498,057...12,510,701
Ensembl chrNW_004624781:12,498,702...12,512,810 		JBrowse link
G Hnf1a HNF1 homeobox A involved_in ISO (PMID:15355349) UniProt PMID:15355349 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724 		JBrowse link
G Hnf1b HNF1 homeobox B involved_in ISO (PMID:15355349) UniProt PMID:15355349 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO (PMID:33657400) UniProt PMID:33657400 NCBI chrNW_004624782:14,157,905...14,169,231
Ensembl chrNW_004624782:14,157,823...14,169,231 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO (PMID:12218053), (PMID:16314496) UniProt PMID:12218053 PMID:16314496 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126 		JBrowse link
G Med12 mediator complex subunit 12 involved_in ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Med13 mediator complex subunit 13 involved_in ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004624871:1,886,650...1,983,165
Ensembl chrNW_004624871:1,886,688...1,980,105 		JBrowse link
G Med14 mediator complex subunit 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,832,485...14,903,119
Ensembl chrNW_004624762:14,832,816...14,904,882 		JBrowse link
G Med16 mediator complex subunit 16 involved_in ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004624828:7,695,401...7,713,603
Ensembl chrNW_004624828:7,695,316...7,713,603 		JBrowse link
G Med17 mediator complex subunit 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:38,427,854...38,450,625
Ensembl chrNW_004624735:38,427,918...38,451,198 		JBrowse link
G Med24 mediator complex subunit 24 involved_in ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004624795:3,140,340...3,161,930
Ensembl chrNW_004624795:3,140,216...3,162,054 		JBrowse link
G Med30 mediator complex subunit 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:15,831,359...15,847,761
Ensembl chrNW_004624763:15,831,456...15,848,636 		JBrowse link
G Med4 mediator complex subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:6,770,231...6,790,385 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:6377809 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO (PMID:16322095) MGI PMID:16322095 NCBI chrNW_004624830:5,334,273...5,430,887
Ensembl chrNW_004624830:5,333,616...5,408,723 		JBrowse link
G Nfkbia NFKB inhibitor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624838:1,384,337...1,387,602
Ensembl chrNW_004624838:1,384,204...1,390,205 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:2,653,381...2,709,261
Ensembl chrNW_004624800:2,653,732...2,707,161 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:6377809 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Srf serum response factor involved_in ISO (PMID:8887666) BHF-UCL PMID:8887666 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Sub1 SUB1 regulator of transcription involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:22,010,097...22,027,807
Ensembl chrNW_004624759:22,009,266...22,037,394 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624754:22,463,406...22,471,197
Ensembl chrNW_004624754:22,463,441...22,471,192 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624764:12,401,152...12,444,978
Ensembl chrNW_004624764:12,396,938...12,445,681 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624772:4,829,110...4,841,661
Ensembl chrNW_004624772:4,827,514...4,841,646 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624763:17,801,835...17,907,538
Ensembl chrNW_004624763:17,806,280...17,907,547 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,791,406...2,958,886
Ensembl chrNW_004624775:2,791,610...2,959,236 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624741:27,881,850...27,948,543
Ensembl chrNW_004624741:27,883,183...27,909,304 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624770:5,955,159...6,163,060
Ensembl chrNW_004624770:6,031,028...6,162,937 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624831:2,608,972...2,625,036
Ensembl chrNW_004624831:2,609,819...2,625,182 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:11583621), (PMID:17884155), (PMID:18628956) UniProt PMID:11583621 PMID:17884155 PMID:18628956 NCBI chrNW_004624740:16,877,535...16,883,742
Ensembl chrNW_004624740:16,877,619...16,883,742 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:548,072...550,410
Ensembl chrNW_004624774:548,072...550,404 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Tbp TATA-box binding protein involved_in ISO (PMID:17884155) ComplexPortal PMID:17884155 NCBI chrNW_004624850:6,359,382...6,375,391
Ensembl chrNW_004624850:6,359,418...6,375,391 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO (PMID:22323595) MGI PMID:22323595 NCBI chrNW_004624825:3,138,386...3,162,774
Ensembl chrNW_004624825:3,137,823...3,162,294 		JBrowse link
G Znhit1 zinc finger HIT-type containing 1 involved_in ISO (MGI:6106288|PMID:29138493) UniProt PMID:29138493 MGI:6106288 NCBI chrNW_004624740:16,066,354...16,073,810
Ensembl chrNW_004624740:16,066,354...16,073,643 		JBrowse link
regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (PMID:8413268) MGI PMID:8413268 NCBI chrNW_004624824:8,582,754...8,615,073
Ensembl chrNW_004624824:8,582,803...8,614,313 		JBrowse link
regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo1 forkhead box O1 involved_in ISO PMID:19483080 UniProt PMID:19483080 RGD:401901209 NCBI chrNW_004624748:1,413,754...1,529,646
Ensembl chrNW_004624748:1,413,983...1,529,992 		JBrowse link
regulation of transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pwwp2a PWWP domain containing 2A involved_in ISO (MGI:6867108|PMID:33235983) UniProt PMID:33235983 MGI:6867108 NCBI chrNW_004624733:29,404,918...29,443,674
Ensembl chrNW_004624733:29,404,778...29,441,414 		JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8641287) MGI
TreeGrafter		 PMID:8641287 GO_REF:0000118 NCBI chrNW_004624930:1,104,387...1,120,580
Ensembl chrNW_004624930:1,104,311...1,122,077 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624865:5,089,425...5,128,228
Ensembl chrNW_004624865:5,088,926...5,128,289 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624746:3,403,122...3,412,709
Ensembl chrNW_004624746:3,406,644...3,412,188 		JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dr1 down-regulator of transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:4,263,288...4,282,097
Ensembl chrNW_004624742:4,263,288...4,282,609 		JBrowse link
G Esr1 estrogen receptor 1 involved_in ISO (PMID:9841876) GO_Central PMID:9841876 NCBI chrNW_004624785:6,164,507...6,601,302
Ensembl chrNW_004624785:6,164,379...6,601,326 		JBrowse link
G Gtf2a2 general transcription factor IIA subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:12,498,057...12,510,701
Ensembl chrNW_004624781:12,498,702...12,512,810 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 ISO RGD PMID:7929273 RGD:9681417 NCBI chrNW_004624748:9,703,846...9,863,320
Ensembl chrNW_004624748:9,703,846...9,863,300 		JBrowse link
G LOC101708811 transcription initiation factor TFIID subunit 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:39,961,692...39,962,820 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
(PMID:28893950)		 ComplexPortal
MGI		 PMID:27007846 PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624754:22,463,406...22,471,197
Ensembl chrNW_004624754:22,463,441...22,471,192 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:12,401,152...12,444,978
Ensembl chrNW_004624764:12,396,938...12,445,681 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) ComplexPortal PMID:27007846 NCBI chrNW_004624772:4,829,110...4,841,661
Ensembl chrNW_004624772:4,827,514...4,841,646 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) ComplexPortal PMID:27007846 NCBI chrNW_004624763:17,801,835...17,907,538
Ensembl chrNW_004624763:17,806,280...17,907,547 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,791,406...2,958,886
Ensembl chrNW_004624775:2,791,610...2,959,236 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) ComplexPortal PMID:27007846 NCBI chrNW_004624741:27,881,850...27,948,543
Ensembl chrNW_004624741:27,883,183...27,909,304 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) ComplexPortal PMID:27007846 NCBI chrNW_004624831:2,608,972...2,625,036
Ensembl chrNW_004624831:2,609,819...2,625,182 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:16,877,535...16,883,742
Ensembl chrNW_004624740:16,877,619...16,883,742 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:548,072...550,410
Ensembl chrNW_004624774:548,072...550,404 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624902:1,239,776...1,267,443
Ensembl chrNW_004624902:1,243,817...1,256,209 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) ComplexPortal PMID:27007846 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Tbp TATA-box binding protein involved_in ISO (PMID:9841876)
(PMID:27007846)		 CAFA
ComplexPortal		 PMID:9841876 PMID:27007846 NCBI chrNW_004624850:6,359,382...6,375,391
Ensembl chrNW_004624850:6,359,418...6,375,391 		JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:525,302...637,951
Ensembl chrNW_004624905:524,880...638,237 		JBrowse link
transcription initiation at mitochondrial promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polrmt RNA polymerase mitochondrial involved_in ISO (PMID:29149603) ComplexPortal PMID:29149603 NCBI chrNW_004624828:7,876,682...7,888,990
Ensembl chrNW_004624828:7,876,739...7,888,923 		JBrowse link
G Tfam transcription factor A, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624791:5,183,276...5,198,986
Ensembl chrNW_004624791:5,179,195...5,198,611 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624785:3,027,662...3,085,879
Ensembl chrNW_004624785:3,027,230...3,085,879 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:13,115,227...13,132,841 JBrowse link
transcription initiation at RNA polymerase I promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,624,535...1,635,409
Ensembl chrNW_004624795:1,624,373...1,634,292 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:16809778) UniProt PMID:16809778 NCBI chrNW_004624930:1,104,387...1,120,580
Ensembl chrNW_004624930:1,104,311...1,122,077 		JBrowse link
G Polr1g RNA polymerase I subunit G involved_in ISO (PMID:16809778) UniProt PMID:16809778 NCBI chrNW_004624907:2,286,040...2,288,533
Ensembl chrNW_004624907:2,286,050...2,288,242 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15989966) InterPro
TreeGrafter
MGI		 PMID:15989966 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624824:8,582,754...8,615,073
Ensembl chrNW_004624824:8,582,803...8,614,313 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:12498690) ParkinsonsUK-UCL PMID:12498690 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (PMID:7720715) MGI PMID:7720715 NCBI chrNW_004624760:3,893,665...3,918,237 JBrowse link
G Ubtf upstream binding transcription factor involved_in ISO (PMID:12498690), (PMID:16809778), (PMID:16858408) UniProt PMID:12498690 PMID:16809778 PMID:16858408 NCBI chrNW_004624795:768,627...779,174
Ensembl chrNW_004624795:768,697...780,639 		JBrowse link
transcription initiation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H involved_in ISO (PMID:7533895), (PMID:8692841) ARUK-UCL PMID:7533895 PMID:8692841 NCBI chrNW_004624743:6,883,124...6,902,518
Ensembl chrNW_004624743:6,883,114...6,902,745 		JBrowse link
G Cdk7 cyclin dependent kinase 7 involved_in ISO (PMID:7533895), (PMID:8692841) ARUK-UCL PMID:7533895 PMID:8692841 NCBI chrNW_004624905:123,365...175,776
Ensembl chrNW_004624905:123,318...176,168 		JBrowse link
G Eloa elongin A involved_in ISO (PMID:7660122) UniProt PMID:7660122 NCBI chrNW_004624764:8,295,713...8,312,293
Ensembl chrNW_004624764:8,295,770...8,312,590 		JBrowse link
G Elob elongin B involved_in ISO (PMID:7660122) UniProt PMID:7660122 NCBI chrNW_004624824:590,541...593,704
Ensembl chrNW_004624824:590,334...596,494 		JBrowse link
G Eloc elongin C involved_in ISO (PMID:7660122) UniProt PMID:7660122 NCBI chrNW_004624744:17,270,861...17,299,541
Ensembl chrNW_004624744:17,270,476...17,299,029 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in ISO (PMID:8692841) UniProt PMID:8692841 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870 		JBrowse link
G Gtf2a1 general transcription factor IIA subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624734:20,795,550...20,830,602
Ensembl chrNW_004624734:20,795,474...20,831,234 		JBrowse link
G Gtf2a1l general transcription factor IIA subunit 1 like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624738:29,817,883...29,872,773
Ensembl chrNW_004624738:29,818,046...29,872,612 		JBrowse link
G Gtf2a2 general transcription factor IIA subunit 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624781:12,498,057...12,510,701
Ensembl chrNW_004624781:12,498,702...12,512,810 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624731:27,453,525...27,484,844
Ensembl chrNW_004624731:27,453,531...27,484,819 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624839:7,248,183...7,328,582
Ensembl chrNW_004624839:7,247,596...7,329,480 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624828:3,512,990...3,521,848
Ensembl chrNW_004624828:3,513,027...3,521,650 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004624748:9,703,846...9,863,320
Ensembl chrNW_004624748:9,703,846...9,863,300 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in ISO (PMID:8692841) UniProt PMID:8692841 NCBI chrNW_004624766:9,807,973...9,848,167
Ensembl chrNW_004624766:9,808,170...9,848,173 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 involved_in ISO (PMID:10924514) GO_Central PMID:10924514 NCBI chrNW_004624905:395,922...421,203 JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624785:70,425...82,098
Ensembl chrNW_004624785:69,978...82,012 		JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) UniProt PMID:1502157 NCBI chrNW_004624782:13,395,273...13,398,250 JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in ISO (PMID:8692841) UniProt PMID:8692841 NCBI chrNW_004624734:40,148,761...40,389,233
Ensembl chrNW_004624734:40,154,577...40,389,402 		JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:14,294,694...14,308,843
Ensembl chrNW_004624732:14,295,113...14,308,826 		JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,228,590...1,230,943
Ensembl chrNW_004624926:1,228,602...1,230,943 		JBrowse link
G Polr2i RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:10,359,984...10,361,472
Ensembl chrNW_004624794:10,359,984...10,361,826 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:25412659)
(PMID:17996705)		 ParkinsonsUK-UCL
BHF-UCL		 PMID:17996705 PMID:25412659 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:9603525) UniProt PMID:9603525 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624754:22,463,406...22,471,197
Ensembl chrNW_004624754:22,463,441...22,471,192 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:9603525) UniProt PMID:9603525 NCBI chrNW_004624764:12,401,152...12,444,978
Ensembl chrNW_004624764:12,396,938...12,445,681 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:17,801,835...17,907,538
Ensembl chrNW_004624763:17,806,280...17,907,547 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:12771217), (PMID:9603525) UniProt PMID:9603525 PMID:12771217 NCBI chrNW_004624741:27,881,850...27,948,543
Ensembl chrNW_004624741:27,883,183...27,909,304 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:5,955,159...6,163,060
Ensembl chrNW_004624770:6,031,028...6,162,937 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:9045704), (PMID:9603525) UniProt PMID:9045704 PMID:9603525 NCBI chrNW_004624831:2,608,972...2,625,036
Ensembl chrNW_004624831:2,609,819...2,625,182 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624740:16,877,535...16,883,742
Ensembl chrNW_004624740:16,877,619...16,883,742 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624774:548,072...550,410
Ensembl chrNW_004624774:548,072...550,404 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7 like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624902:1,239,776...1,267,443
Ensembl chrNW_004624902:1,243,817...1,256,209 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982 		JBrowse link
G Wdr5 WD repeat domain 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:2,275,660...2,291,796
Ensembl chrNW_004624760:2,274,813...2,292,379 		JBrowse link
G Wdr86 WD repeat domain 86 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,294,161...5,324,419
Ensembl chrNW_004624800:5,294,200...5,312,177 		JBrowse link
transcription initiation at RNA polymerase III promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crcp CGRP receptor component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624740:8,431,986...8,470,264
Ensembl chrNW_004624740:8,431,970...8,469,765 		JBrowse link
G Gtf3c1 general transcription factor IIIC subunit 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624782:12,073,895...12,141,397
Ensembl chrNW_004624782:12,074,781...12,141,315 		JBrowse link
G Gtf3c4 general transcription factor IIIC subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:3,666,442...3,692,077
Ensembl chrNW_004624760:3,673,769...3,692,407 		JBrowse link
G Gtf3c5 general transcription factor IIIC subunit 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:3,402,718...3,415,925
Ensembl chrNW_004624760:3,400,224...3,415,929 		JBrowse link
G Polr3h RNA polymerase III subunit H involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:7,066,057...7,074,251
Ensembl chrNW_004624752:7,066,073...7,074,251 		JBrowse link
transcription initiation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ash2l ASH2 like, histone lysine methyltransferase complex subunit involved_in ISO (PMID:19556245) UniProt PMID:19556245 NCBI chrNW_004624780:5,502,708...5,531,541
Ensembl chrNW_004624780:5,502,512...5,531,446 		JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (PMID:10821277) ARUK-UCL PMID:10821277 NCBI chrNW_004624787:12,241,838...12,338,089 JBrowse link
G Brd7 bromodomain containing 7 involved_in ISO (PMID:20228809) UniProt PMID:20228809 NCBI chrNW_004624757:6,294,559...6,335,401
Ensembl chrNW_004624757:6,294,415...6,335,285 		JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (PMID:18765639) UniProt PMID:18765639 NCBI chrNW_004624741:23,924,124...23,948,849
Ensembl chrNW_004624741:23,925,326...23,948,819 		JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:13,694,135...13,706,465
Ensembl chrNW_004624738:13,694,135...13,706,364 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624824:2,655,909...2,692,546
Ensembl chrNW_004624824:2,655,909...2,692,522 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,859,974...5,892,519
Ensembl chrNW_004624795:5,859,443...5,892,527 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO (PMID:15960975) UniProt PMID:15960975 NCBI chrNW_004624782:14,157,905...14,169,231
Ensembl chrNW_004624782:14,157,823...14,169,231 		JBrowse link
G Kdm1b lysine demethylase 1B involved_in ISO (PMID:30970244) UniProt PMID:30970244 NCBI chrNW_004624756:8,447,780...8,506,870
Ensembl chrNW_004624756:8,449,585...8,506,858 		JBrowse link
G Kdm2a lysine demethylase 2A involved_in ISO (MGI:6694658|PMID:32584788) UniProt PMID:32584788 MGI:6694658 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793 		JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:19556245)
(PMID:15960975)		 UniProt PMID:15960975 PMID:19556245 NCBI chrNW_004624784:13,824,507...13,912,672
Ensembl chrNW_004624784:13,824,541...13,908,077 		JBrowse link
G Lcor ligand dependent nuclear receptor corepressor involved_in ISO (MGI:6159308|PMID:29628311) ARUK-UCL PMID:29628311 MGI:6159308 NCBI chrNW_004624737:8,302,285...8,456,247
Ensembl chrNW_004624737:8,369,522...8,446,114 		JBrowse link
G LOC101706296 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101713469 protein FAM47A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624762:18,400,696...18,402,129 JBrowse link
G Men1 menin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:21,579,084...21,585,380
Ensembl chrNW_004624767:21,579,103...21,585,373 		JBrowse link
G Myocd myocardin involved_in ISO (MGI:3525929|PMID:15601857) UniProt PMID:15601857 MGI:3525929 NCBI chrNW_004624877:618,789...647,471 JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in ISO (PMID:31061526) UniProt PMID:31061526 NCBI chrNW_004624745:16,908,683...16,922,941
Ensembl chrNW_004624745:16,908,686...16,920,351 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) GO_Central PMID:16322561 NCBI chrNW_004624818:8,551,379...8,563,760
Ensembl chrNW_004624818:8,551,462...8,563,529 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chrNW_004624774:2,496,276...2,603,894
Ensembl chrNW_004624774:2,495,304...2,602,632 		JBrowse link
G Pabpc1l poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within ISO (PMID:26134869) MGI PMID:26134869 NCBI chrNW_004624790:9,545,719...9,572,447
Ensembl chrNW_004624790:9,545,145...9,570,872 		JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:2,693,276...2,734,070
Ensembl chrNW_004624764:2,693,060...2,734,107 		JBrowse link
G Phf2 PHD finger protein 2 involved_in ISO (MGI:6716956|PMID:22921934) UniProt PMID:22921934 MGI:6716956 NCBI chrNW_004624868:2,890,730...2,992,788
Ensembl chrNW_004624868:2,890,612...2,975,988 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:6,011,861...6,046,927
Ensembl chrNW_004624807:6,011,289...6,046,923 		JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO (PMID:23894581) UniProt PMID:23894581 NCBI chrNW_004624782:13,054,643...13,076,640
Ensembl chrNW_004624782:13,054,343...13,072,515 		JBrowse link
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:10,753,480...10,760,601
Ensembl chrNW_004624801:10,753,333...10,764,122 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:34910916) UniProt PMID:34910916 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) UniProt PMID:12917342 NCBI chrNW_004624816:2,213,963...2,227,739
Ensembl chrNW_004624816:2,213,969...2,228,413 		JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) UniProt PMID:19729656 NCBI chrNW_004624832:5,246,328...5,254,247
Ensembl chrNW_004624832:5,246,895...5,253,207 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (PMID:33951726)
(MGI:6508514|PMID:30171019)		 UniProt
ARUK-UCL		 PMID:30171019 PMID:33951726 MGI:6508514 NCBI chrNW_004624767:1,376,649...1,404,382
Ensembl chrNW_004624767:1,394,704...1,404,406 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:16322561) GO_Central PMID:16322561 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31061526) UniProt PMID:31061526 NCBI chrNW_004624767:21,998,839...21,999,984
Ensembl chrNW_004624767:21,998,812...21,999,984 		JBrowse link
G Usp21 ubiquitin specific peptidase 21 involved_in ISO (MGI:3846030|PMID:18172164) UniProt PMID:18172164 MGI:3846030 NCBI chrNW_004624794:216,668...223,259
Ensembl chrNW_004624794:216,951...223,269 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624772:18,662,515...18,674,214
Ensembl chrNW_004624772:18,662,110...18,674,193 		JBrowse link
G Wbp2 WW domain binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:5,737,034...5,745,935
Ensembl chrNW_004624801:5,736,797...5,746,018 		JBrowse link
G Wdr5 WD repeat domain 5 involved_in ISO (PMID:19556245) UniProt PMID:19556245 NCBI chrNW_004624760:2,275,660...2,291,796
Ensembl chrNW_004624760:2,274,813...2,292,379 		JBrowse link
G Znhit1 zinc finger HIT-type containing 1 involved_in ISO (MGI:6287047|PMID:30842416), (MGI:7260820|PMID:35167494) UniProt PMID:30842416 PMID:35167494 MGI:6287047 MGI:7260820 NCBI chrNW_004624740:16,066,354...16,073,810
Ensembl chrNW_004624740:16,066,354...16,073,643 		JBrowse link
transcription open complex formation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:27,453,525...27,484,844
Ensembl chrNW_004624731:27,453,531...27,484,819 		JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624734:213,536...280,816
Ensembl chrNW_004624734:213,895...279,777 		JBrowse link
G Brf2 BRF2 RNA polymerase III transcription initiation factor subunit involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:5,752,018...5,757,323
Ensembl chrNW_004624780:5,751,435...5,757,447 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO (PMID:18319258) MGI PMID:18319258 NCBI chrNW_004624789:15,612,311...15,623,878
Ensembl chrNW_004624789:15,612,335...15,624,152 		JBrowse link
transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2b general transcription factor IIB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15225
    metabolic process 9677
      macromolecule metabolic process 7911
        nucleic acid metabolic process 4133
          RNA metabolic process 3634
            RNA biosynthetic process 3455
              DNA-templated transcription initiation 162
                DNA-templated transcription open complex formation + 2
                DNA-templated transcriptional start site selection + 2
                negative regulation of DNA-templated transcription initiation + 8
                positive regulation of DNA-templated transcription initiation + 56
                regulation of DNA-templated transcription initiation + 66
                transcription initiation at RNA polymerase I promoter + 10
                transcription initiation at RNA polymerase II promoter + 127
                transcription initiation at RNA polymerase III promoter + 6
                transcription initiation at mitochondrial promoter 4
                transcription preinitiation complex assembly + 38
Path 2
Term Annotations click to browse term
  biological_process 15225
    cellular process 14346
      cellular metabolic process 8100
        cellular biosynthetic process 6146
          macromolecule biosynthetic process 5677
            nucleic acid biosynthetic process 3554
              RNA biosynthetic process 3455
                DNA-templated transcription 2773
                  DNA-templated transcription initiation 162
                    DNA-templated transcription open complex formation + 2
                    DNA-templated transcriptional start site selection + 2
                    negative regulation of DNA-templated transcription initiation + 8
                    positive regulation of DNA-templated transcription initiation + 56
                    regulation of DNA-templated transcription initiation + 66
                    transcription initiation at RNA polymerase I promoter + 10
                    transcription initiation at RNA polymerase II promoter + 127
                    transcription initiation at RNA polymerase III promoter + 6
                    transcription initiation at mitochondrial promoter 4
                    transcription preinitiation complex assembly + 38
paths to the root