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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene expression by genomic imprinting
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Accession:GO:0006349 term browser browse the term
Definition:An epigenetic mechanism of regulation of gene expression in which epigenetic modifications (imprints) are established during gametogenesis. For a given gene to show parentally biased expression, the imprint are established exclusively in one of the two parental genomes, thus generating an asymmetry between the maternal and paternal alleles.
Synonyms:exact_synonym: regulation of gene expression by DNA imprinting
 related_synonym: regulation of gene expression by genetic imprinting
 xref: Wikipedia:Genomic_imprinting



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regulation of gene expression by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A acts_upstream_of_or_within ISO MGI:2137512 (MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:3686546 NCBI chr 6:89,522,463...89,593,868
Ensembl chr 6:89,522,442...89,593,510
JBrowse link
G Arid4b AT-rich interaction domain 4B acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2444354 (MGI:3686546|PMID:17043311)
GO_REF:0000107
RGD
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chr17:51,138,419...51,262,956
Ensembl chr17:51,138,535...51,262,906
JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO
GO_REF:0000107
(MGI:5009779|PMID:20820192)
Ensembl
RGD
PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within ISO (MGI:2450195|PMID:12461525), (MGI:3044090|PMID:14716017), (MGI:3045676|PMID:15143173) RGD PMID:12461525 PMID:14716017 PMID:15143173 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO MGI:2182412|MGI:3047552|MGI:3047824 (MGI:2178074|PMID:11934864), (MGI:3045942|PMID:15215868)
(MGI:5009774|PMID:21047779)
RGD PMID:11934864 PMID:15215868 PMID:21047779 MGI:2178074 MGI:3045942 MGI:5009774 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:2182410|MGI:2182414 (MGI:2178074|PMID:11934864) RGD PMID:11934864 MGI:2178074 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO MGI:1856856 (MGI:2655036|PMID:12627233) RGD PMID:12627233 MGI:2655036 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2429679 (MGI:2389526|PMID:12410230), (MGI:3054495|PMID:15340049)
Ensembl
RGD
PMID:12410230 PMID:15340049 GO_REF:0000107 MGI:2389526 MGI:3054495 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO MGI:4359289 (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO MGI:2137311 (MGI:3530434|PMID:15608638)
(PMID:15608638)
RGD PMID:15608638 MGI:3530434 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3692841|PMID:17048991)
UniProt
RGD
PMID:17048991 GO_REF:0000024 MGI:3692841 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:18622393)
MGI:3826984 (MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
GO_REF:0000024
RGD
UniProt
PMID:18622393 PMID:18854139 PMID:33500348 GO_REF:0000024 MGI:3826319 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
JBrowse link
inactivation of X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcgf3 polycomb group ring finger 3 involved_in ISO (MGI:5908473|PMID:28596365) RGD PMID:28596365 MGI:5908473 NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793
JBrowse link
G Pcgf5 polycomb group ring finger 5 involved_in IBA
ISO
PMID:21873635
(MGI:5908473|PMID:28596365)
RGD PMID:28596365 PMID:21873635 MGI:5908473, RGD:13792537 NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    cellular process 18319
      cellular component organization or biogenesis 6656
        cellular component organization 6418
          chromatin organization 583
            regulation of gene expression, epigenetic 214
              regulation of gene expression by genomic imprinting 17
                inactivation of X chromosome by genomic imprinting + 2
Path 2
Term Annotations click to browse term
  biological_process 19512
    cellular process 18319
      cellular component organization or biogenesis 6656
        cellular component organization 6418
          organelle organization 3941
            chromosome organization 1023
              chromatin organization 583
                regulation of gene expression, epigenetic 214
                  regulation of gene expression by genomic imprinting 17
                    inactivation of X chromosome by genomic imprinting + 2
paths to the root