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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome assembly
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Accession:GO:0006334 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Synonyms:exact_synonym: nucleosome modeling
 related_synonym: histone chaperone

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nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chrNW_004955419:27,471,539...27,553,078
Ensembl chrNW_004955419:27,471,930...27,488,065 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO (PMID:11897662)
(PMID:14718166)		 MGI
GO_Central		 PMID:11897662 PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within		 ISO (PMID:14718166)
(PMID:12842904)		 GO_Central
MGI		 PMID:12842904 PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651 		JBrowse link
G Atrx ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955409:26,136,961...26,231,960
Ensembl chrNW_004955409:26,149,665...26,231,180 		JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO (PMID:18406326) UniProt PMID:18406326 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826 		JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955455:8,162,365...8,312,932
Ensembl chrNW_004955455:8,162,315...8,312,909 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955461:14,184,318...14,189,645
Ensembl chrNW_004955461:14,185,737...14,189,645 		JBrowse link
G Daxx death domain associated protein involved_in ISO (PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)		 UniProt PMID:20504901 PMID:20651253 MGI:5567907 NCBI chrNW_004955437:1,869,692...1,874,041
Ensembl chrNW_004955437:1,869,572...1,873,050 		JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) UniProt PMID:33857403 NCBI chrNW_004955437:18,485,975...18,491,561
Ensembl chrNW_004955437:18,485,975...18,491,608 		JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:27552915)
(PMID:25990725)		 UniProt PMID:25990725 PMID:27552915 NCBI chrNW_004955559:2,033,743...2,039,493
Ensembl chrNW_004955559:2,029,414...2,039,493 		JBrowse link
G H3f3a H3 histone, family 3A involved_in ISO (PMID:21636898)
(PMID:25615412)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398 		JBrowse link
G H3f3b H3 histone, family 3B involved_in ISO (PMID:25615412)
(PMID:21636898)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244 		JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428 		JBrowse link
G LOC102006228 histone H3 involved_in ISO (PMID:25615412)
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735)		 UniProt PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102009660 protein HIRA involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955442:18,581,370...18,673,590
Ensembl chrNW_004955442:18,581,370...18,673,761 		JBrowse link
G LOC102021406 histone H2A involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004955593:911,641...911,919 JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556 		JBrowse link
G LOC102030314 histone H2B type 1-A involved_in
acts_upstream_of_or_within		 ISO (PMID:24699735)
(PMID:17261847)
(MGI:5502464|PMID:23884607)		 UniProt
MGI		 PMID:17261847 PMID:23884607 PMID:24699735 MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (PMID:10531422) MGI PMID:10531422 NCBI chrNW_004955429:16,012,345...16,027,151
Ensembl chrNW_004955429:16,012,173...16,027,277 		JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chrNW_004955442:13,895,248...13,926,152
Ensembl chrNW_004955442:13,895,248...13,918,723 		JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 involved_in ISO (PMID:9325046)
(MGI:5897488|PMID:28366643)		 UniProt PMID:9325046 PMID:28366643 MGI:5897488 NCBI chrNW_004955422:14,630,858...14,673,171
Ensembl chrNW_004955422:14,628,371...14,673,165 		JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166), (PMID:25615412) UniProt PMID:14718166 PMID:25615412 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chrNW_004955527:1,536,917...1,560,508
Ensembl chrNW_004955527:1,536,423...1,561,130 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004955419:14,086,940...14,089,906
Ensembl chrNW_004955419:14,086,940...14,089,330 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036 		JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596)
(PMID:11691835)		 UniProt
ComplexPortal		 PMID:11691835 PMID:12972596 NCBI chrNW_004955414:14,084,812...14,212,162
Ensembl chrNW_004955414:14,084,812...14,212,156 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596), (PMID:14759371)
(PMID:11691835)		 ComplexPortal PMID:11691835 PMID:12972596 PMID:14759371 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333 		JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (PMID:23752591) MGI PMID:23752591 NCBI chrNW_004955406:8,768,365...9,417,612
Ensembl chrNW_004955406:8,768,588...9,417,525 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:23378026) UniProt PMID:23378026 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556 		JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004955442:12,627,530...12,654,159
Ensembl chrNW_004955442:12,627,530...12,654,159 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    cellular process 11480
      cellular component organization or biogenesis 5364
        cellular component organization 5235
          protein-containing complex organization 1644
            protein-DNA complex organization 482
              chromatin organization 436
                nucleosome assembly 38
                  positive regulation of nucleosome disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 12346
    cellular process 11480
      cellular component organization or biogenesis 5364
        cellular component organization 5235
          protein-containing complex organization 1644
            protein-DNA complex organization 482
              chromatin organization 436
                chromatin remodeling 373
                  nucleosome organization 55
                    nucleosome assembly 38
                      positive regulation of nucleosome disassembly 0
paths to the root