chromatin organization - Ontology Report

GO_REF:0000043

NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197

ARID1A

AT-rich interaction domain 1A

acts_upstream_of_or_within

(MGI:1934781|PMID:11318604)

PMID:11318604

MGI:1934781

NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384

anti-silencing function 1A histone chaperone

involved_in

GO_REF:0000002

NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913

anti-silencing function 1B histone chaperone

involved_in

GO_REF:0000002

NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681

ASH1L

ASH1 like histone lysine methyltransferase

involved_in

GO_REF:0000043

NCBI chr 4:94,297,532...94,484,994
Ensembl chr 4:94,297,635...94,484,991

ATAD2

ATPase family AAA domain containing 2

involved_in

GO_REF:0000002

NCBI chr 4:16,012,278...16,082,343
Ensembl chr 4:16,012,561...16,082,638

ATXN7L3

ataxin 7 like 3

involved_in

GO_REF:0000043

NCBI chr12:19,012,324...19,020,136
Ensembl chr12:19,012,743...19,019,783

BABAM2

BRISC and BRCA1 A complex member 2

involved_in

GO_REF:0000043 GO_REF:0000104

NCBI chr 3:110,897,250...111,328,414
Ensembl chr 3:110,897,351...111,328,405

BAG6

BAG cochaperone 6

involved_in

GO_REF:0000043

NCBI chr 7:23,756,897...23,768,659
Ensembl chr 7:23,756,897...23,775,893

BANF1

BAF nuclear assembly factor 1

involved_in

GO_REF:0000107

NCBI chr 2:6,333,451...6,335,326
Ensembl chr 2:6,333,361...6,334,834

BAZ1B

bromodomain adjacent to zinc finger domain 1B

acts_upstream_of_or_within
involved_in

(MGI:2179578|PMID:11980720)

PMID:11980720

GO_REF:0000107 MGI:2179578

NCBI chr 3:10,761,461...10,843,918
Ensembl chr 3:10,762,359...10,843,877

BRD1

bromodomain containing 1

involved_in

GO_REF:0000117

NCBI chr 5:774,307...808,016
Ensembl chr 5:770,654...808,006

BRD2

bromodomain containing 2

involved_in

GO_REF:0000043

NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433

BRD3

bromodomain containing 3

involved_in

GO_REF:0000043

Ensembl chr 1:273,502,320...273,534,361

BRD4

bromodomain containing 4

involved_in

GO_REF:0000043

NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,987...62,345,387

BRDT

bromodomain testis associated

involved_in

GO_REF:0000043

NCBI chr 4:125,004,897...125,062,208
Ensembl chr 4:125,004,898...125,062,197

BRPF1

bromodomain and PHD finger containing 1

involved_in

GO_REF:0000117

NCBI chr13:66,021,047...66,037,446
Ensembl chr13:66,021,301...66,037,427

BRPF3

bromodomain and PHD finger containing 3

involved_in

GO_REF:0000117

NCBI chr 7:31,926,313...31,966,006
Ensembl chr 7:31,926,307...31,966,001

CARM1

coactivator associated arginine methyltransferase 1

involved_in

GO_REF:0000043

NCBI chr 2:69,602,121...69,644,862
Ensembl chr 2:69,602,130...69,644,862

CBX1

chromobox 1

involved_in

(PMID:21873635)

NCBI chr12:24,319,104...24,351,057
Ensembl chr12:24,315,544...24,351,052

CBX3

chromobox 3

involved_in

(PMID:21873635)

NCBI chr18:46,193,138...46,205,114
Ensembl chr18:46,193,138...46,204,714

CBX5

chromobox 5

involved_in

(PMID:21873635)

MGI
Ensembl
GO_Central
GO_Central

NCBI chr 5:19,446,083...19,484,527
Ensembl chr 5:19,450,008...19,484,463

CDAN1

codanin 1

acts_upstream_of_or_within
involved_in

ISO
IEA
IBA

(PMID:21364188)
(PMID:21873635)

PMID:21364188 PMID:21873635

GO_REF:0000107

NCBI chr 1:128,641,411...128,655,556
Ensembl chr 1:128,641,430...128,655,554

CHD1

chromodomain helicase DNA binding protein 1

involved_in

GO_REF:0000043

NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,152

CHD2

chromodomain helicase DNA binding protein 2

involved_in

GO_REF:0000043

NCBI chr 7:85,980,759...86,107,886
Ensembl chr 7:85,980,759...86,107,859

CHD3

chromodomain helicase DNA binding protein 3

involved_in
acts_upstream_of_or_within

(MGI:1333986|PMID:10204490)

UniProt
Ensembl
UniProt
MGI
Ensembl

PMID:10204490

GO_REF:0000043 GO_REF:0000107 MGI:1333986

NCBI chr12:53,135,767...53,163,244
Ensembl chr12:53,112,230...53,165,653

CHD4

chromodomain helicase DNA binding protein 4

involved_in

GO_REF:0000043

NCBI chr 5:64,071,627...64,105,212
Ensembl chr 5:64,072,697...64,105,198

CHD5

chromodomain helicase DNA binding protein 5

involved_in

GO_REF:0000043

NCBI chr 6:67,017,410...67,086,685
Ensembl chr 6:67,017,425...67,087,043

CHD6

chromodomain helicase DNA binding protein 6

involved_in

GO_REF:0000043

NCBI chr17:44,048,056...44,265,472
Ensembl chr17:44,047,803...44,265,431

CHD7

chromodomain helicase DNA binding protein 7

involved_in

GO_REF:0000043

NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,571,874...72,754,432

CHD8

chromodomain helicase DNA binding protein 8

involved_in

GO_REF:0000043

NCBI chr 7:77,719,476...77,780,148
Ensembl chr 7:77,719,554...77,780,147

CHD9

chromodomain helicase DNA binding protein 9

involved_in

GO_REF:0000043

NCBI chr 6:31,829,870...32,071,975
Ensembl chr 6:31,830,505...32,013,734

CMTR1

cap methyltransferase 1

involved_in

GO_REF:0000043

NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739

CREBBP

CREB binding protein

involved_in

GO_REF:0000117

NCBI chr 3:38,388,366...38,530,243
Ensembl chr 3:38,388,547...38,530,230

DAXX

death domain associated protein

involved_in

GO_REF:0000043

NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110

DEK

DEK proto-oncogene

involved_in

InterPro
UniProt
InterPro

GO_REF:0000002 GO_REF:0000043

NCBI chr 7:13,901,562...13,935,477
Ensembl chr 7:13,872,775...13,935,173

DNAJC2

DnaJ heat shock protein family (Hsp40) member C2

involved_in

GO_REF:0000043

NCBI chr 9:103,329,873...103,362,599
Ensembl chr 9:103,329,881...103,362,608

DOT1L

DOT1 like histone lysine methyltransferase

involved_in

GO_REF:0000043

NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966

EHMT1

euchromatic histone lysine methyltransferase 1

involved_in

GO_REF:0000117

EHMT2

euchromatic histone lysine methyltransferase 2

involved_in

GO_REF:0000117

NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,993,478

ENY2

ENY2 transcription and export complex 2 subunit

involved_in

GO_REF:0000043

NCBI chr 4:28,193,631...28,203,549
Ensembl chr 4:28,191,162...28,203,485

EP400

E1A binding protein p400

involved_in

GO_REF:0000043

NCBI chr14:23,286,938...23,396,316
Ensembl chr14:23,289,244...23,396,457

EZH1

enhancer of zeste 1 polycomb repressive complex 2 subunit

involved_in

GO_REF:0000043

NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749

enhancer of zeste 2 polycomb repressive complex 2 subunit

involved_in

GO_REF:0000043

NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941

FAM50A

family with sequence similarity 50 member A

involved_in

(PMID:21873635)

NCBI chr X:124,967,821...124,973,487
Ensembl chr X:124,967,593...124,978,290

FAM50B

family with sequence similarity 50 member B

involved_in

(PMID:21873635)

NCBI chr 7:2,290,461...2,310,772
Ensembl chr 7:2,309,088...2,310,080

GATAD1

GATA zinc finger domain containing 1

involved_in

(PMID:21873635)

NCBI chr 9:72,360,321...72,370,064
Ensembl chr 9:72,360,483...72,368,607

GPX4

glutathione peroxidase 4

involved_in
acts_upstream_of_or_within

(MGI:1934492|PMID:11344099)

PMID:11344099

GO_REF:0000107 MGI:1934492

NCBI chr 2:77,321,568...77,323,931
Ensembl chr 2:77,320,464...77,323,886

H1-2

H1.2 linker histone, cluster member

acts_upstream_of_or_within

(MGI:2664444|PMID:12808097)

PMID:12808097

MGI:2664444

NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356

H1-5

H1.5 linker histone, cluster member

involved_in

(PMID:22956909)

PMID:22956909

NCBI chr 7:21,621,863...21,622,646

H2A histone family, member Y

involved_in

GO_REF:0000043

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

HAT1

histone acetyltransferase 1

involved_in

GO_REF:0000002

NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665

HDAC1

histone deacetylase 1

involved_in

GO_REF:0000043

NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412

HDAC2

histone deacetylase 2

involved_in

GO_REF:0000043

NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585

HDAC3

histone deacetylase 3

involved_in

GO_REF:0000043

NCBI chr 2:143,273,188...143,287,421
Ensembl chr 2:143,273,191...143,287,387

HDAC4

histone deacetylase 4

involved_in

UniProt
UniProt
InterPro
InterPro

GO_REF:0000002 GO_REF:0000043

NCBI chr15:138,378,237...138,657,266
Ensembl chr15:138,381,627...138,614,301

HDAC5

histone deacetylase 5

involved_in

UniProt
InterPro

GO_REF:0000002 GO_REF:0000043

NCBI chr12:19,077,910...19,119,463
Ensembl chr12:19,077,997...19,123,140

HDAC7

histone deacetylase 7

involved_in

GO_REF:0000002 GO_REF:0000043

NCBI chr 5:78,150,554...78,186,051
Ensembl chr 5:78,150,558...78,186,072

HDAC8

histone deacetylase 8

involved_in

GO_REF:0000043

NCBI chr X:58,210,182...58,450,681

HDAC9

histone deacetylase 9

involved_in

InterPro
UniProt
InterPro
UniProt

GO_REF:0000002 GO_REF:0000043

NCBI chr 9:87,164,400...88,192,803
Ensembl chr 9:87,449,359...88,186,965

HIRA

histone cell cycle regulator

involved_in

UniProt
InterPro
UniProt

GO_REF:0000002 GO_REF:0000043

NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506

HK3

hexokinase 3

involved_in

GO_Central
GO_Central
MGI

GO_REF:0000043

NCBI chr 2:81,042,401...81,060,832
Ensembl chr 2:80,929,267...81,060,829

HMGN1

high mobility group nucleosome binding domain 1

involved_in
acts_upstream_of_or_within

IBA
ISO

(PMID:21873635)
(MGI:3590574|PMID:12660172)

PMID:12660172 PMID:21873635

MGI:3590574

NCBI chr13:202,936,313...202,943,496
Ensembl chr13:202,905,233...202,943,538

HMGN2

high mobility group nucleosomal binding domain 2

involved_in

(PMID:21873635)

NCBI chr 6:83,857,114...83,861,907
Ensembl chr 6:83,823,255...83,861,907

HMGN3

high mobility group nucleosomal binding domain 3

involved_in

(PMID:21873635)

NCBI chr 1:86,954,468...86,987,465
Ensembl chr 1:86,953,923...86,987,465

HMGN4

high mobility group nucleosomal binding domain 4

involved_in

(PMID:21873635)

NCBI chr 7:20,998,913...21,003,138
Ensembl chr 7:20,998,957...21,003,136

HMGN5

high mobility group nucleosome binding domain 5

involved_in
acts_upstream_of_or_within

(MGI:5578301|PMID:24392144)

InterPro
InterPro
MGI

PMID:24392144

GO_REF:0000002 MGI:5578301

NCBI chr X:64,541,310...64,617,345

ING1

inhibitor of growth family member 1

involved_in

GO_REF:0000043

NCBI chr11:77,270,272...77,278,346
Ensembl chr11:77,270,320...77,277,455

ING2

inhibitor of growth family member 2

involved_in

GO_REF:0000002 GO_REF:0000043

NCBI chr15:44,917,595...44,925,900
Ensembl chr15:44,918,066...44,925,867

ING3

inhibitor of growth family member 3

involved_in

GO_REF:0000043

NCBI chr18:25,946,529...25,976,528
Ensembl chr18:25,948,087...25,976,499

ING4

inhibitor of growth family member 4

involved_in

GO_REF:0000043

NCBI chr 5:64,027,789...64,036,671
Ensembl chr 5:64,027,855...64,037,749

ING5

inhibitor of growth family member 5

involved_in

GO_REF:0000043

NCBI chr15:140,264,708...140,279,020
Ensembl chr15:140,244,006...140,280,190

JAK2

Janus kinase 2

involved_in

GO_REF:0000043

NCBI chr 1:216,849,744...217,002,310
Ensembl chr 1:216,848,686...217,002,148

KAT2A

lysine acetyltransferase 2A

involved_in

GO_REF:0000117

NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463

KDM1A

lysine demethylase 1A

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr 6:80,903,407...80,971,875
Ensembl chr 6:80,903,496...80,971,595

KDM1B

lysine demethylase 1B

involved_in

GO_REF:0000117

NCBI chr 7:13,846,283...13,902,912
Ensembl chr 7:13,845,942...13,901,263

KDM2A

lysine demethylase 2A

involved_in

GO_REF:0000043

NCBI chr 2:5,238,690...5,357,799
Ensembl chr 2:5,240,287...5,357,164

KDM2B

lysine demethylase 2B

involved_in

GO_REF:0000043

NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,057,121...31,203,092

KDM4A

lysine demethylase 4A

involved_in

GO_REF:0000043

NCBI chr 6:167,597,954...167,642,381
Ensembl chr 6:167,597,956...167,642,309

KDM4B

lysine demethylase 4B

involved_in

GO_REF:0000043

NCBI chr 2:73,746,379...73,889,881
Ensembl chr 2:73,747,641...73,889,865

KDM4C

lysine demethylase 4C

involved_in

GO_REF:0000043

NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,334...215,507,800

KDM5A

lysine demethylase 5A

involved_in

GO_REF:0000043

NCBI chr 5:67,628,791...67,716,143
Ensembl chr 5:67,629,380...67,716,651

KDM5B

lysine demethylase 5B

involved_in

GO_REF:0000043

NCBI chr10:24,739,115...24,831,537
Ensembl chr10:24,736,834...24,831,447

KDM5C

lysine demethylase 5C

involved_in

GO_REF:0000043

NCBI chr X:45,968,812...46,003,215
Ensembl chr X:45,968,814...46,003,215

KDM7A

lysine demethylase 7A

involved_in

GO_REF:0000043

NCBI chr18:9,581,468...9,664,750
Ensembl chr18:9,581,384...9,664,749

KMT2A

lysine methyltransferase 2A

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr 9:45,743,566...45,828,559

KMT2B

lysine methyltransferase 2B

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr 6:45,146,863...45,166,854
Ensembl chr 6:45,146,846...45,166,852

KMT2C

lysine methyltransferase 2C

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr18:4,993,213...5,279,668
Ensembl chr18:4,993,196...5,279,042

L3MBTL1

L3MBTL histone methyl-lysine binding protein 1

involved_in

GO_REF:0000043

NCBI chr17:46,135,567...46,176,967
Ensembl chr17:46,119,409...46,173,944

L3MBTL2

L3MBTL histone methyl-lysine binding protein 2

involved_in

GO_REF:0000043

NCBI chr 5:7,257,806...7,277,633
Ensembl chr 5:7,253,644...7,277,576

L3MBTL3

L3MBTL histone methyl-lysine binding protein 3

involved_in

GO_REF:0000043

NCBI chr 1:33,198,295...33,319,477
Ensembl chr 1:33,198,301...33,319,367

LAMC1

laminin subunit gamma 1

involved_in

(MGI:5828725|PMID:27234308)

PMID:27234308

MGI:5828725

NCBI chr 9:124,283,668...124,405,967
Ensembl chr 9:124,281,834...124,431,818

LOC100152135

histone H2B type 1-A-like

acts_upstream_of_or_within

(MGI:5569674|PMID:24506885)

PMID:24506885

MGI:5569674

NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512

LOC100153329

histone H2A type 1-A

involved_in
acts_upstream_of_or_within

(MGI:5569674|PMID:24506885)

PMID:24506885

GO_REF:0000107 MGI:5569674

NCBI chr 7:20,463,528...20,464,825
Ensembl chr 7:20,464,408...20,464,803

LOC100513253

non-histone chromosomal protein HMG-14 pseudogene

involved_in

(PMID:21873635)

NCBI chr X:43,481,194...43,481,489

LOC100514009

histone-lysine N-methyltransferase SETMAR

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr13:60,914,412...60,933,064

LOC106509183

histone-arginine methyltransferase CARM1-like

involved_in

GO_REF:0000043

NCBI chr 1:218,676,452...218,944,670

LOC110257883

lysine-specific demethylase 5D-like

involved_in

GO_REF:0000043

NCBI chr Y:39,582,253...39,631,823
Ensembl chr Y:39,582,815...39,631,815

LRWD1

leucine rich repeats and WD repeat domain containing 1

involved_in

UniProt
Ensembl
UniProt
GO_Central
GO_Central

(PMID:21873635)

GO_REF:0000043 GO_REF:0000107

NCBI chr 3:9,806,251...9,812,488
Ensembl chr 3:9,806,131...9,814,026

macroH2A.2 histone

involved_in

GO_REF:0000043

NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226

MBTD1

mbt domain containing 1

involved_in

GO_REF:0000043

NCBI chr12:27,450,809...27,526,412
Ensembl chr12:27,450,805...27,526,985

MEAF6

MYST/Esa1 associated factor 6

involved_in

GO_REF:0000043

NCBI chr 6:93,559,259...93,589,030
Ensembl chr 6:93,558,899...93,589,014

MORF4L1

mortality factor 4 like 1

involved_in

GO_REF:0000002 GO_REF:0000043

NCBI chr 7:48,050,050...48,075,799
Ensembl chr 7:48,050,045...48,075,796

MORF4L2

mortality factor 4 like 2

involved_in

InterPro
UniProt

GO_REF:0000002 GO_REF:0000043

NCBI chr X:84,553,770...84,566,304
Ensembl chr X:84,552,705...84,569,030

MOS

MOS proto-oncogene, serine/threonine kinase

involved_in

GO_REF:0000024 GO_REF:0000107

NCBI chr 4:75,739,402...75,741,076
Ensembl chr 4:75,739,402...75,741,076

MSL3

MSL complex subunit 3

involved_in

GO_REF:0000002 GO_REF:0000043

NCBI chr X:8,519,366...8,535,249
Ensembl chr X:8,518,835...8,535,249

MTF2

metal response element binding transcription factor 2

involved_in

(PMID:21873635)

NCBI chr 4:124,051,586...124,124,440
Ensembl chr 4:124,050,097...124,124,438

NR3C1

nuclear receptor subfamily 3 group C member 1

involved_in

GO_REF:0000043

NCBI chr 2:144,822,937...144,956,451
Ensembl chr 2:144,822,937...144,956,095

NSD1

nuclear receptor binding SET domain protein 1

involved_in

GO_REF:0000043

NCBI chr 2:80,649,882...80,810,934
Ensembl chr 2:80,654,378...80,809,059

NSD2

nuclear receptor binding SET domain protein 2

involved_in

GO_REF:0000043

NCBI chr 8:938,832...1,018,032
Ensembl chr 8:963,884...1,018,025

NSD3

nuclear receptor binding SET domain protein 3

involved_in

GO_REF:0000043

NCBI chr15:48,119,132...48,245,673
Ensembl chr15:48,136,362...48,241,820

NUCKS1

nuclear casein kinase and cyclin dependent kinase substrate 1

involved_in

GO_REF:0000107

NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577

OGT

O-linked N-acetylglucosamine (GlcNAc) transferase

involved_in

GO_REF:0000043

NCBI chr X:57,521,091...57,558,467
Ensembl chr X:57,521,097...57,558,519

PADI4

peptidyl arginine deiminase 4

involved_in

GO_REF:0000107

NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169

PBRM1

polybromo 1

involved_in

GO_REF:0000043

NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,721...34,820,957

PHF1

PHD finger protein 1

involved_in

(PMID:21873635)

NCBI chr 7:29,714,295...29,719,996
Ensembl chr 7:29,694,899...29,722,010

PHF19

PHD finger protein 19

involved_in

(PMID:21873635)

NCBI chr 1:260,899,462...260,919,776
Ensembl chr 1:260,899,450...260,920,111

PHF2

PHD finger protein 2

involved_in

GO_REF:0000043

NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813

PHF8

PHD finger protein 8

involved_in

GO_REF:0000043

NCBI chr X:46,648,164...46,761,192
Ensembl chr X:46,648,165...46,759,248

PRKAA1

protein kinase AMP-activated catalytic subunit alpha 1

involved_in

GO_REF:0000043

NCBI chr16:25,745,902...25,783,524
Ensembl chr16:25,745,321...25,783,610

PRKAA2

protein kinase AMP-activated catalytic subunit alpha 2

involved_in

GO_REF:0000043

NCBI chr 6:155,683,392...155,754,283
Ensembl chr 6:155,681,781...155,754,272

PRMT1

protein arginine methyltransferase 1

involved_in

GO_REF:0000117

NCBI chr 6:54,718,845...54,730,411
Ensembl chr 6:54,711,393...54,732,574

PRMT6

protein arginine methyltransferase 6

involved_in

GO_REF:0000117

NCBI chr 4:112,698,865...112,710,305
Ensembl chr 4:112,696,790...112,703,585

PRMT7

protein arginine methyltransferase 7

involved_in

GO_REF:0000043

NCBI chr 6:28,883,148...28,945,904
Ensembl chr 6:28,883,158...28,945,906

PUM3

pumilio RNA binding family member 3

involved_in

GO_REF:0000043

NCBI chr 1:218,994,139...219,038,208
Ensembl chr 1:218,994,185...219,038,522

PWWP3A

PWWP domain containing 3A, DNA repair factor

involved_in

InterPro
Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr 2:77,089,915...77,111,236
Ensembl chr 2:77,089,915...77,111,206

RAG1

recombination activating 1

involved_in

GO_REF:0000043

NCBI chr 2:24,565,447...24,573,853
Ensembl chr 2:24,565,449...24,602,590

RB1

RB transcriptional corepressor 1

involved_in

GO_REF:0000043

NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,759...19,317,690

RBL1

RB transcriptional corepressor like 1

involved_in

GO_REF:0000043

NCBI chr17:40,201,214...40,279,318
Ensembl chr17:40,194,949...40,279,350

RBL2

RB transcriptional corepressor like 2

involved_in

GO_REF:0000043

NCBI chr 6:31,757,718...31,802,047
Ensembl chr 6:31,748,739...31,802,022

RELA

RELA proto-oncogene, NF-kB subunit

involved_in

GO_REF:0000107

NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,471

RNF168

ring finger protein 168

involved_in

GO_REF:0000043

NCBI chr13:133,625,534...133,659,253

RNF20

ring finger protein 20

involved_in

GO_REF:0000043

NCBI chr 1:243,225,711...243,254,465
Ensembl chr 1:243,225,924...243,254,446

RNF40

ring finger protein 40

involved_in

GO_REF:0000043

NCBI chr 3:17,622,309...17,635,990
Ensembl chr 3:17,622,319...17,639,900

RNF8

ring finger protein 8

involved_in

GO_REF:0000043

NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739

SATB1

SATB homeobox 1

acts_upstream_of_or_within

(MGI:2658695|PMID:12692553)

PMID:12692553

MGI:2658695

NCBI chr13:5,315,985...5,410,686
Ensembl chr13:5,314,358...5,417,591

SETD1A

SET domain containing 1A, histone lysine methyltransferase

involved_in

GO_REF:0000043

NCBI chr 3:17,463,768...17,490,397
Ensembl chr 3:17,463,768...17,488,594

SETD2

SET domain containing 2, histone lysine methyltransferase

involved_in

GO_REF:0000043

NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360

SETD7

SET domain containing 7, histone lysine methyltransferase

involved_in

GO_REF:0000043

NCBI chr 8:87,478,266...87,527,190
Ensembl chr 8:87,477,808...87,527,190

SETDB1

SET domain bifurcated histone lysine methyltransferase 1

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096

SETDB2

SET domain bifurcated histone lysine methyltransferase 2

involved_in

GO_REF:0000117

NCBI chr11:18,252,525...18,298,234
Ensembl chr11:18,252,527...18,297,826

SIRT1

sirtuin 1

involved_in

GO_REF:0000107

NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299

SMARCA2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

involved_in

GO_REF:0000117

NCBI chr 1:219,624,773...219,815,438
Ensembl chr 1:219,573,535...219,815,421

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

involved_in

GO_REF:0000117

NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

acts_upstream_of_or_within
involved_in

(MGI:2179578|PMID:11980720)

PMID:11980720

GO_REF:0000107 MGI:2179578

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

SMYD2

SET and MYND domain containing 2

involved_in

GO_REF:0000043

NCBI chr 9:129,263,524...129,316,226
Ensembl chr 9:129,263,520...129,317,325

SRSF6

serine and arginine rich splicing factor 6

involved_in

GO_REF:0000043

NCBI chr17:46,119,612...46,122,540
Ensembl chr17:46,119,409...46,173,944

SUPT4H1

SPT4 homolog, DSIF elongation factor subunit

involved_in

(PMID:21873635)

NCBI chr12:34,622,775...34,629,681
Ensembl chr12:34,619,729...34,629,022

SUV39H1

SUV39H1 histone lysine methyltransferase

involved_in

GO_REF:0000043 GO_REF:0000117

NCBI chr X:42,797,309...42,811,457
Ensembl chr X:42,797,828...42,814,003

SUV39H2

SUV39H2 histone lysine methyltransferase

involved_in

Ensembl
Ensembl
UniProt
UniProt

GO_REF:0000043 GO_REF:0000107 GO_REF:0000117

NCBI chr10:46,874,606...46,900,058
Ensembl chr10:46,862,584...46,900,040

TBC1D22B

TBC1 domain family member 22B

involved_in

GO_REF:0000043

NCBI chr 7:32,839,178...32,914,498
Ensembl chr 7:32,839,146...32,914,495

TDRD3

tudor domain containing 3

involved_in

GO_REF:0000043

NCBI chr11:33,257,556...33,440,131
Ensembl chr11:33,258,063...33,440,127

UBN1

ubinuclein 1

involved_in

GO_REF:0000002

NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185

UIMC1

ubiquitin interaction motif containing 1

involved_in

GO_REF:0000043

NCBI chr 2:80,895,631...81,040,712
Ensembl chr 2:80,919,244...81,035,711

USP16

ubiquitin specific peptidase 16

involved_in

GO_REF:0000043

NCBI chr13:192,376,850...192,406,474
Ensembl chr13:192,376,881...192,406,474

WAC

WW domain containing adaptor with coiled-coil

involved_in

GO_REF:0000043

NCBI chr10:39,932,562...40,024,114
Ensembl chr10:39,932,570...40,024,115

ZBTB7A

zinc finger and BTB domain containing 7A

involved_in

GO_REF:0000107

NCBI chr 2:74,678,293...74,699,347
Ensembl chr 2:74,681,192...74,695,975

ZMPSTE24

zinc metallopeptidase STE24

acts_upstream_of_or_within
involved_in

(MGI:3789238|PMID:16079796)

PMID:16079796

GO_REF:0000107 MGI:3789238

NCBI chr 6:96,008,307...96,057,131
Ensembl chr 6:96,008,455...96,062,951

ZNF462

zinc finger protein 462

involved_in
acts_upstream_of_or_within

(MGI:4440672|PMID:20219459)

Ensembl
MGI

PMID:20219459

GO_REF:0000107 MGI:4440672

NCBI chr 1:248,029,136...248,181,792
Ensembl chr 1:248,031,631...248,179,783

CENP-A containing chromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CENPP

centromere protein P

involved_in

GO_REF:0000002

NCBI chr 3:42,053,074...42,309,745
Ensembl chr 3:42,053,058...42,308,381

HJURP

Holliday junction recognition protein

involved_in

(PMID:21873635)

MGI
Ensembl
GO_Central
GO_Central

GO_REF:0000107

NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,569...134,123,107

MIS18A

MIS18 kinetochore protein A

acts_upstream_of_or_within
involved_in

ISO
IEA
IBA

(MGI:5438906|PMID:22516971)
(PMID:21873635)

PMID:21873635 PMID:22516971

GO_REF:0000107 MGI:5438906

NCBI chr13:195,912,044...195,928,309
Ensembl chr13:195,911,299...195,928,292

nuclear autoantigenic sperm protein

involved_in

(PMID:21873635)

NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369

OIP5

Opa interacting protein 5

involved_in

(PMID:21873635)

NCBI chr 1:130,036,478...130,054,058
Ensembl chr 1:130,036,480...130,047,043

chromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CDAN1

codanin 1

involved_in

GO_REF:0000107

NCBI chr 1:128,641,411...128,655,556
Ensembl chr 1:128,641,430...128,655,554

CHAF1A

chromatin assembly factor 1 subunit A

involved_in

GO_REF:0000107

NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825

CHAF1B

chromatin assembly factor 1 subunit B

involved_in

GO_REF:0000107

NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556

HMGB1

high mobility group box 1

involved_in

(MGI:3807115|PMID:18650382)

PMID:18650382

MGI:3807115

NCBI chr11:7,195,556...7,321,071

NOC2L

NOC2 like nucleolar associated transcriptional repressor

involved_in

GO_REF:0000107

NCBI chr 6:63,307,703...63,320,799
Ensembl chr 6:63,308,187...63,340,917

RB binding protein 4, chromatin remodeling factor

involved_in

(PMID:8858152)

PMID:8858152

NCBI chr 6:88,987,092...89,006,815

RSF1

remodeling and spacing factor 1

involved_in

GO_REF:0000107

NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

involved_in

GO_REF:0000107

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

TP53

tumor protein p53

involved_in

GO_REF:0000107

NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819

chromatin looping

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CTCF

CCCTC-binding factor

involved_in

GO_REF:0000107

NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009

chromatin remodeling

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ACTL6A

actin like 6A

acts_upstream_of_or_within
involved_in

(MGI:1314932|PMID:9845365)

PMID:9845365

GO_REF:0000107 MGI:1314932

NCBI chr13:117,598,415...117,627,311
Ensembl chr13:117,598,493...117,628,493

ACTR5

actin related protein 5

involved_in

GO_REF:0000107

NCBI chr17:41,702,273...41,724,398
Ensembl chr17:41,702,273...41,724,394

ACTR6

actin related protein 6

involved_in

GO_REF:0000002

NCBI chr 5:83,909,415...83,929,076
Ensembl chr 5:83,908,876...83,929,054

ACTR8

actin related protein 8

involved_in

GO_REF:0000002

NCBI chr13:35,951,601...35,988,501
Ensembl chr13:35,910,692...35,996,831

ARID1A

AT-rich interaction domain 1A

involved_in
acts_upstream_of_or_within

(MGI:3789431|PMID:18448678)

InterPro
Ensembl
InterPro
MGI

PMID:18448678

GO_REF:0000002 GO_REF:0000107 MGI:3789431

NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384

ARID1B

AT-rich interaction domain 1B

involved_in

GO_REF:0000002

NCBI chr 1:9,791,627...10,227,381
Ensembl chr 1:9,791,629...10,227,947

ATRX

ATRX chromatin remodeler

involved_in

(PMID:21873635)

Ensembl
GO_Central
GOC

GO_REF:0000107 GO_REF:0000108

NCBI chr X:61,584,028...61,872,341
Ensembl chr X:61,584,848...61,872,288

BAHD1

bromo adjacent homology domain containing 1

involved_in

(PMID:21873635)

NCBI chr 1:130,849,835...130,874,735
Ensembl chr 1:130,849,835...130,878,321

BAZ1A

bromodomain adjacent to zinc finger domain 1A

involved_in

MGI
GO_Central
Ensembl
InterPro

UniProt
Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107 GO_REF:0000117

NCBI chr 7:64,969,626...65,069,969
Ensembl chr 7:64,877,674...65,069,889

BAZ1B

bromodomain adjacent to zinc finger domain 1B

acts_upstream_of_or_within
involved_in

ISO
IBA
IEA

(MGI:2179578|PMID:11980720)
(PMID:21873635)

PMID:11980720 PMID:21873635

GO_REF:0000002 GO_REF:0000107 MGI:2179578

NCBI chr 3:10,761,461...10,843,918
Ensembl chr 3:10,762,359...10,843,877

BAZ2A

bromodomain adjacent to zinc finger domain 2A

acts_upstream_of_or_within

(MGI:2149896|PMID:11532953)

PMID:11532953

MGI:2149896

NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021

BPTF

bromodomain PHD finger transcription factor

involved_in

(PMID:14609955)

ComplexPortal

PMID:14609955

NCBI chr12:14,112,943...14,254,810
Ensembl chr12:14,112,643...14,255,408

BRD2

bromodomain containing 2

involved_in

(PMID:21873635)

NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433

BRD3

bromodomain containing 3

involved_in

(PMID:21873635)

Ensembl chr 1:273,502,320...273,534,361

BRD4

bromodomain containing 4

involved_in

(PMID:21873635)

NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,987...62,345,387

BRDT

bromodomain testis associated

involved_in
acts_upstream_of_or_within

PMID:12861021 PMID:22215678

(MGI:2668282|PMID:12861021)

RGD
Ensembl
MGI

GO_REF:0000107 MGI:2668282 RGD:9586361

NCBI chr 4:125,004,897...125,062,208
Ensembl chr 4:125,004,898...125,062,197

BTAF1

B-TFIID TATA-box binding protein associated factor 1

involved_in

GO_REF:0000108

NCBI chr14:103,530,746...103,641,082
Ensembl chr14:103,530,787...103,642,266

CECR2

CECR2 histone acetyl-lysine reader

involved_in

GO_REF:0000002

NCBI chr 5:69,621,871...69,747,730
Ensembl chr 5:69,621,759...69,744,436

CFDP1

craniofacial development protein 1

involved_in

(PMID:21873635)

PMID:16415155 PMID:21873635

NCBI chr 6:12,223,701...12,354,180
Ensembl chr 6:12,223,747...12,354,177

CHD1

chromodomain helicase DNA binding protein 1

acts_upstream_of_or_within
involved_in

ISO
IBA
IEA

(MGI:3616364|PMID:16415155)
(PMID:21873635)

MGI
GO_Central
Ensembl
GOC

GO_REF:0000107 GO_REF:0000108 MGI:3616364

NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,152

CHD1L

chromodomain helicase DNA binding protein 1 like

involved_in

Ensembl
Ensembl
GO_Central
InterPro
GO_Central
InterPro

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 4:100,264,963...100,425,728
Ensembl chr 4:100,264,967...100,436,529

CHD2

chromodomain helicase DNA binding protein 2

involved_in

(PMID:21873635)

GOC
GO_Central

GO_REF:0000108

NCBI chr 7:85,980,759...86,107,886
Ensembl chr 7:85,980,759...86,107,859

CHD3

chromodomain helicase DNA binding protein 3

involved_in

Ensembl
GO_Central
InterPro
Ensembl

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr12:53,135,767...53,163,244
Ensembl chr12:53,112,230...53,165,653

CHD4

chromodomain helicase DNA binding protein 4

involved_in

InterPro
Ensembl
GO_Central

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 5:64,071,627...64,105,212
Ensembl chr 5:64,072,697...64,105,198

CHD5

chromodomain helicase DNA binding protein 5

involved_in

InterPro
Ensembl
GO_Central

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 6:67,017,410...67,086,685
Ensembl chr 6:67,017,425...67,087,043

CHD6

chromodomain helicase DNA binding protein 6

involved_in

(PMID:21873635)

GOC
GO_Central

Ensembl
GO_Central
MGI
Ensembl

GO_REF:0000108

NCBI chr17:44,048,056...44,265,472
Ensembl chr17:44,047,803...44,265,431

CHD7

chromodomain helicase DNA binding protein 7

involved_in
acts_upstream_of_or_within

IEA
IBA
ISO

(PMID:21873635)
(MGI:5694290|PMID:26102480)

PMID:21873635 PMID:26102480

GO_REF:0000107 MGI:5694290

NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,571,874...72,754,432

CHD8

chromodomain helicase DNA binding protein 8

involved_in

Ensembl
GO_Central
UniProt
InterPro
Ensembl

(PMID:21873635)

GO_REF:0000002 GO_REF:0000104 GO_REF:0000107

NCBI chr 7:77,719,476...77,780,148
Ensembl chr 7:77,719,554...77,780,147

CHD9

chromodomain helicase DNA binding protein 9

involved_in

GO_REF:0000108

NCBI chr 6:31,829,870...32,071,975
Ensembl chr 6:31,830,505...32,013,734

CHDH

choline dehydrogenase

involved_in

GO_REF:0000002

NCBI chr13:35,910,688...35,950,438
Ensembl chr13:35,910,696...35,948,259

CHRAC1

chromatin accessibility complex subunit 1

involved_in

GO_REF:0000107

NCBI chr 4:3,014,171...3,028,808
Ensembl chr 4:3,024,615...3,028,725

DAXX

death domain associated protein

involved_in

GO_REF:0000107

NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110

DMAP1

DNA methyltransferase 1 associated protein 1

involved_in

GO_REF:0000002

NCBI chr 6:167,083,053...167,091,654
Ensembl chr 6:167,082,846...167,091,630

DR1

down-regulator of transcription 1

involved_in

(PMID:21873635)

NCBI chr 4:123,815,088...123,835,875
Ensembl chr 4:123,815,456...123,835,826

EOMES

eomesodermin

involved_in

(MGI:6220563|PMID:30186101)

PMID:30186101

MGI:6220563

NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,210,083...14,215,797

EP400

E1A binding protein p400

involved_in

GO_REF:0000108

NCBI chr14:23,286,938...23,396,316
Ensembl chr14:23,289,244...23,396,457

ERCC6

ERCC excision repair 6, chromatin remodeling factor

involved_in

GOC
GOC

GO_REF:0000108

NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898

ERCC6L

ERCC excision repair 6 like, spindle assembly checkpoint helicase

involved_in

GO_REF:0000108

NCBI chr X:58,087,216...58,117,942
Ensembl chr X:58,087,169...58,117,947

ERCC6L2

ERCC excision repair 6 like 2

involved_in

GO_REF:0000108

NCBI chr10:26,112,019...26,264,759
Ensembl chr10:26,112,032...26,264,175

EZH1

enhancer of zeste 1 polycomb repressive complex 2 subunit

involved_in

GO_REF:0000002

NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749

enhancer of zeste 2 polycomb repressive complex 2 subunit

involved_in

GO_REF:0000002

NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941

FOXA1

forkhead box A1

involved_in

GO_REF:0000107

NCBI chr 7:62,471,233...62,479,638
Ensembl chr 7:62,471,228...62,479,223

GATA3

GATA binding protein 3

involved_in
acts_upstream_of_or_within

(MGI:3046385|PMID:15087456)

PMID:15087456

GO_REF:0000107 MGI:3046385

NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859

GATAD1

GATA zinc finger domain containing 1

involved_in

GO_REF:0000107

NCBI chr 9:72,360,321...72,370,064
Ensembl chr 9:72,360,483...72,368,607

GATAD2A

GATA zinc finger domain containing 2A

involved_in

GO_REF:0000107

NCBI chr 2:58,415,749...58,517,308
Ensembl chr 2:58,415,749...58,517,191

GATAD2B

GATA zinc finger domain containing 2B

involved_in

GO_REF:0000107

NCBI chr 4:95,766,989...95,864,502
Ensembl chr 4:95,759,073...95,864,458

HCFC2

host cell factor C2

involved_in

(PMID:21873635)

NCBI chr 5:80,366,826...80,409,798
Ensembl chr 5:80,370,426...80,409,786

HDAC1

histone deacetylase 1

involved_in

GO_REF:0000107

NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412

HDAC2

histone deacetylase 2

involved_in

GO_REF:0000107

NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585

HDAC4

histone deacetylase 4

involved_in

(PMID:18850004)

BHF-UCL

PMID:18850004

NCBI chr15:138,378,237...138,657,266
Ensembl chr15:138,381,627...138,614,301

helicase, lymphoid specific

involved_in

GO_REF:0000108

NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998

HLTF

helicase like transcription factor

involved_in

GO_REF:0000108

NCBI chr13:89,261,199...89,333,020
Ensembl chr13:89,261,192...89,333,000

HNF1A

HNF1 homeobox A

involved_in
acts_upstream_of_or_within

(MGI:3699537|PMID:11733582)

PMID:11733582

GO_REF:0000107 MGI:3699537

NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328

INO80

INO80 complex ATPase subunit

involved_in

UniProt
UniProt
Ensembl
InterPro

GO_REF:0000002 GO_REF:0000104 GO_REF:0000107

NCBI chr 1:130,201,705...130,341,627
Ensembl chr 1:130,201,718...130,342,840

INO80B

INO80 complex subunit B

involved_in

InterPro
Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr 3:68,585,038...68,588,321

INO80C

INO80 complex subunit C

involved_in

GO_Central
GO_Central
Ensembl
InterPro
InterPro

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 6:119,262,488...119,285,852
Ensembl chr 6:119,260,579...119,286,145

INO80D

INO80 complex subunit D

involved_in

GO_REF:0000107

NCBI chr15:109,301,753...109,376,614
Ensembl chr15:109,307,166...109,376,463

INO80E

INO80 complex subunit E

involved_in

InterPro
InterPro
Ensembl

GO_REF:0000002 GO_REF:0000107

NCBI chr 3:18,202,092...18,212,187
Ensembl chr 3:18,202,150...18,211,265

KAT2A

lysine acetyltransferase 2A

involved_in

(PMID:21873635)

NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463

KAT2B

lysine acetyltransferase 2B

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr13:6,985,151...7,099,771
Ensembl chr13:6,985,235...7,100,346

KDM4A

lysine demethylase 4A

involved_in

(PMID:21873635)

NCBI chr 6:167,597,954...167,642,381
Ensembl chr 6:167,597,956...167,642,309

KDM4B

lysine demethylase 4B

involved_in

(PMID:21873635)

NCBI chr 2:73,746,379...73,889,881
Ensembl chr 2:73,747,641...73,889,865

KDM4C

lysine demethylase 4C

involved_in

(PMID:21873635)

NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,334...215,507,800

KDM5A

lysine demethylase 5A

involved_in

(PMID:21873635)

NCBI chr 5:67,628,791...67,716,143
Ensembl chr 5:67,629,380...67,716,651

KDM5B

lysine demethylase 5B

involved_in

(PMID:21873635)

NCBI chr10:24,739,115...24,831,537
Ensembl chr10:24,736,834...24,831,447

KDM5C

lysine demethylase 5C

involved_in

(PMID:21873635)

NCBI chr X:45,968,812...46,003,215
Ensembl chr X:45,968,814...46,003,215

KDM6A

lysine demethylase 6A

involved_in

GO_REF:0000107

NCBI chr X:39,953,764...40,154,197
Ensembl chr X:39,953,759...40,154,194

KDM6B

lysine demethylase 6B

involved_in

GO_REF:0000107

NCBI chr12:53,087,072...53,108,949
Ensembl chr12:53,091,334...53,108,214

KLF1

Kruppel like factor 1

acts_upstream_of_or_within

(MGI:3056025|PMID:15489291)

PMID:15489291

MGI:3056025

NCBI chr 2:66,144,767...66,148,500
Ensembl chr 2:66,144,777...66,148,517

LOC100514356

lysine-specific demethylase 4D

involved_in

(PMID:21873635)

NCBI chr 9:27,102,104...27,106,143

LOC110257883

lysine-specific demethylase 5D-like

involved_in

(PMID:21873635)

NCBI chr Y:39,582,253...39,631,823
Ensembl chr Y:39,582,815...39,631,815

MBD2

methyl-CpG binding domain protein 2

involved_in

GO_REF:0000107

NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,683,065...103,752,427

MBD3

methyl-CpG binding domain protein 3

involved_in

GO_REF:0000107

NCBI chr 2:76,913,880...76,923,435
Ensembl chr 2:76,906,644...76,923,435

MCRS1

microspherule protein 1

involved_in

GO_REF:0000107

NCBI chr 5:15,517,028...15,526,567
Ensembl chr 5:15,517,028...15,526,510

MEN1

menin 1

acts_upstream_of_or_within

(MGI:3616364|PMID:16415155)
(MGI:3616131|PMID:15044367)

PMID:15044367 PMID:16415155

MGI:3616131 MGI:3616364

NCBI chr 2:7,358,130...7,364,952
Ensembl chr 2:7,357,951...7,365,128

MIER1

MIER1 transcriptional regulator

involved_in

GO_REF:0000107

NCBI chr 6:145,609,619...145,680,063
Ensembl chr 6:145,609,619...145,680,649

MLLT1

MLLT1 super elongation complex subunit

involved_in

(PMID:21873635)

NCBI chr 2:72,780,950...72,847,694
Ensembl chr 2:72,780,947...72,847,691

MLLT3

MLLT3 super elongation complex subunit

involved_in

(PMID:21873635)

NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,317,453...202,607,061

MORC2

MORC family CW-type zinc finger 2

involved_in

GO_REF:0000107

NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643

MPND

MPN domain containing

involved_in

(PMID:21873635)

NCBI chr 2:74,445,660...74,455,928
Ensembl chr 2:74,445,662...74,456,479

MTA1

metastasis associated 1

involved_in

GO_REF:0000107

MTA2

metastasis associated 1 family member 2

involved_in

GO_REF:0000107

NCBI chr 2:9,137,818...9,146,966
Ensembl chr 2:9,137,946...9,146,966

MTA3

metastasis associated 1 family member 3

involved_in

GO_REF:0000107

NCBI chr 3:97,601,403...97,782,868
Ensembl chr 3:97,601,411...97,785,518

MYB

MYB proto-oncogene, transcription factor

involved_in

GO_REF:0000107

NCBI chr 1:28,819,500...28,856,222
Ensembl chr 1:28,819,503...28,857,000

MYC

MYC proto-oncogene, bHLH transcription factor

involved_in

UniProt
Ensembl
UniProt
Ensembl

GO_REF:0000024 GO_REF:0000107

NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078

MYSM1

Myb like, SWIRM and MPN domains 1

involved_in

Ensembl
GO_Central
Ensembl
GO_Central

(PMID:21873635)

GO_REF:0000107

NCBI chr 6:153,755,209...153,798,412
Ensembl chr 6:153,756,181...153,795,535

NFRKB

nuclear factor related to kappaB binding protein

involved_in

GO_REF:0000107

NCBI chr 9:56,616,865...56,656,068
Ensembl chr 9:56,614,227...56,656,057

NPM1

nucleophosmin 1

involved_in

(PMID:21873635)

MGI
GO_Central
GO_Central

NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740

NPM2

nucleophosmin/nucleoplasmin 2

acts_upstream_of_or_within
involved_in

ISO
IBA

(MGI:2662932|PMID:12714744)
(PMID:21873635)

PMID:12714744 PMID:21873635

MGI:2662932

NCBI chr14:6,288,422...6,303,750
Ensembl chr14:6,289,337...6,303,748

NPM3

nucleophosmin/nucleoplasmin 3

involved_in

(PMID:21873635)

NCBI chr14:112,819,390...112,822,244
Ensembl chr14:112,819,393...112,821,368

NR3C1

nuclear receptor subfamily 3 group C member 1

involved_in

PMID:12917342

NCBI chr 2:144,822,937...144,956,451
Ensembl chr 2:144,822,937...144,956,095

NUDT5

nudix hydrolase 5

involved_in

GO_REF:0000107

NCBI chr10:59,765,444...59,787,773
Ensembl chr10:59,765,703...59,790,159

PABPC1L

poly(A) binding protein cytoplasmic 1 like

involved_in
acts_upstream_of_or_within

(MGI:5688228|PMID:26134869)

PMID:26134869

GO_REF:0000107 MGI:5688228

NCBI chr17:47,321,259...47,351,905
Ensembl chr17:47,321,380...47,351,106

PADI4

peptidyl arginine deiminase 4

involved_in

GO_REF:0000107

NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169

PAK1

p21 (RAC1) activated kinase 1

involved_in

GO_REF:0000107

NCBI chr 9:11,830,095...11,973,074
Ensembl chr 9:11,830,093...12,113,670

PAX6

paired box 6

involved_in

GO_REF:0000107

NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200

PAX7

paired box 7

acts_upstream_of_or_within

(MGI:5440096|PMID:23070814)

PMID:23070814

MGI:5440096

NCBI chr 6:77,160,827...77,268,626
Ensembl chr 6:77,161,097...77,267,415

PBRM1

polybromo 1

involved_in

GO_REF:0000002

NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,721...34,820,957

PIH1D1

PIH1 domain containing 1

involved_in

GO_REF:0000107

NCBI chr 6:54,524,172...54,529,700
Ensembl chr 6:54,524,172...54,537,588

POLE3

DNA polymerase epsilon 3, accessory subunit

involved_in

GO_REF:0000107

NCBI chr 1:254,033,378...254,036,224

RAD54B

RAD54 homolog B

involved_in

GO_REF:0000108

NCBI chr 4:42,249,482...42,369,408
Ensembl chr 4:42,249,512...42,369,447

RAD54L

RAD54 like

involved_in

GO_REF:0000108

NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776

RAD54L2

RAD54 like 2

involved_in

GO_REF:0000108

NCBI chr13:33,771,783...33,890,567
Ensembl chr13:33,771,814...33,885,848

RB binding protein 4, chromatin remodeling factor

involved_in

(PMID:21873635)

NCBI chr 6:88,987,092...89,006,815

RBBP7

RB binding protein 7, chromatin remodeling factor

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr X:13,293,278...13,317,074
Ensembl chr X:13,280,977...13,317,079

RERE

arginine-glutamic acid dipeptide repeats

acts_upstream_of_or_within

(MGI:2683041|PMID:14645126)

PMID:14645126

MGI:2683041

NCBI chr 6:68,954,766...69,258,855

RSF1

remodeling and spacing factor 1

involved_in

GO_REF:0000107

NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120

RUVBL1

RuvB like AAA ATPase 1

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr13:72,196,219...72,246,514
Ensembl chr13:72,200,511...72,248,582

RUVBL2

RuvB like AAA ATPase 2

involved_in

(PMID:21873635)

InterPro
GO_Central
InterPro
MGI
GO_Central

GO_REF:0000107

NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893

SATB1

SATB homeobox 1

involved_in
acts_upstream_of_or_within

IEA
IBA
ISO

(PMID:21873635)
(MGI:5295905|PMID:21930775)

PMID:21873635 PMID:21930775

GO_REF:0000002 MGI:5295905

NCBI chr13:5,315,985...5,410,686
Ensembl chr13:5,314,358...5,417,591

SATB2

SATB homeobox 2

involved_in
acts_upstream_of_or_within

GO_Central
Ensembl
InterPro
GO_Central
MGI
InterPro

(PMID:21873635)
(MGI:3793380|PMID:18255031)

PMID:18255031 PMID:21873635

GO_REF:0000002 GO_REF:0000107 MGI:3793380

NCBI chr15:102,962,635...103,172,224
Ensembl chr15:102,964,404...103,154,630

SCMH1

Scm polycomb group protein homolog 1

involved_in
acts_upstream_of_or_within

(MGI:3703453|PMID:17215307)

PMID:17215307

GO_REF:0000107 MGI:3703453

NCBI chr 6:169,999,763...170,189,357
Ensembl chr 6:169,999,818...170,189,354

SELENOK

selenoprotein K

involved_in

GO_REF:0000107

NCBI chr13:35,989,461...35,996,824
Ensembl chr13:35,910,697...35,996,831

SMARCA1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

involved_in

InterPro
GOC

GO_REF:0000002 GO_REF:0000108

NCBI chr X:106,039,961...106,116,156
Ensembl chr X:106,039,969...106,116,139

SMARCA2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

involved_in
NOT|involved_in

InterPro
UniProt
InterPro
UniProt

(PMID:22368283)

PMID:22368283

GO_REF:0000002 GO_REF:0000117

NCBI chr 1:219,624,773...219,815,438
Ensembl chr 1:219,573,535...219,815,421

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

involved_in
acts_upstream_of_or_within

PMID:9001244 PMID:16287714

(MGI:3610843|PMID:16287714)

RGD
UniProt
InterPro
Ensembl
MGI

GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 MGI:3610843 RGD:634124

NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

acts_upstream_of_or_within
involved_in

PMID:11532953 PMID:11980720

(MGI:2179578|PMID:11980720)
(MGI:2149896|PMID:11532953)

MGI
InterPro
Ensembl

GO_REF:0000002 GO_REF:0000107 MGI:2149896 MGI:2179578

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

SMARCAD1

SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

involved_in

Ensembl
GOC
Ensembl

GO_REF:0000107 GO_REF:0000108

NCBI chr 8:125,410,221...125,488,471
Ensembl chr 8:125,409,507...125,488,436

SMARCAL1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1

involved_in

GO_REF:0000108

NCBI chr15:118,627,734...118,688,005
Ensembl chr15:118,629,238...118,687,940

SMARCB1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

involved_in

InterPro
InterPro
Ensembl

GO_REF:0000002 GO_REF:0000107

NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048

SMARCC1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1

involved_in

Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr13:30,409,979...30,576,270
Ensembl chr13:30,409,982...30,601,441

SMARCC2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2

involved_in

(PMID:10078207), (PMID:11018012), (PMID:11726552)

PMID:10078207 PMID:11018012 PMID:11726552

NCBI chr 5:21,563,426...21,586,790
Ensembl chr 5:21,563,402...21,586,727

SMARCD1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

involved_in

GO_REF:0000107

NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,459...16,005,778

SMARCD2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

involved_in

Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr12:15,091,926...15,101,899
Ensembl chr12:15,091,733...15,101,899

SMARCD3

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3

involved_in

GO_REF:0000107

NCBI chr18:5,958,466...5,989,120
Ensembl chr18:5,958,481...5,990,025

SMARCE1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1

involved_in

Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr12:21,784,410...21,807,170
Ensembl chr12:21,784,426...21,807,170

SMYD1

SET and MYND domain containing 1

involved_in
acts_upstream_of_or_within

(MGI:2178868|PMID:11923873)

PMID:11923873

GO_REF:0000107 MGI:2178868

NCBI chr 3:57,866,078...57,918,576
Ensembl chr 3:57,867,223...57,945,953

SOX9

SRY-box transcription factor 9

involved_in

GO_REF:0000024 GO_REF:0000107

NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315

SRCAP

Snf2 related CREBBP activator protein

involved_in

GO_REF:0000108

NCBI chr 3:17,662,374...17,702,862

SUV39H2

SUV39H2 histone lysine methyltransferase

involved_in

GO_REF:0000107

NCBI chr10:46,874,606...46,900,058
Ensembl chr10:46,862,584...46,900,040

TADA2A

transcriptional adaptor 2A

involved_in

(PMID:21873635)

NCBI chr12:38,875,156...38,928,011
Ensembl chr12:38,875,193...38,928,011

TADA2B

transcriptional adaptor 2B

involved_in

(PMID:21873635)

NCBI chr 8:3,815,056...3,828,113
Ensembl chr 8:3,812,244...3,828,102

TBR1

T-box brain transcription factor 1

involved_in

GO_REF:0000107

NCBI chr15:68,208,884...68,222,993
Ensembl chr15:68,213,562...68,222,991

TEX264

testis expressed 264, ER-phagy receptor

involved_in

GO_REF:0000108

NCBI chr13:33,892,557...33,924,175
Ensembl chr13:33,771,816...33,926,156

TFPT

TCF3 fusion partner

involved_in

GO_REF:0000107

NCBI chr 6:56,011,496...56,018,166
Ensembl chr 6:56,011,491...56,018,170

TFR2

transferrin receptor 2

involved_in

GO_Central
Ensembl
GO_Central
UniProt
UniProt

(PMID:11726552)

BHF-UCL

PMID:11726552

NCBI chr 3:8,554,322...8,568,774
Ensembl chr 3:8,539,318...8,578,884

TNP1

transition protein 1

involved_in

IBA
IEA
ISS

(PMID:21873635)

GO_REF:0000024 GO_REF:0000107

NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105

TOP1

DNA topoisomerase I

involved_in

(PMID:21873635)

NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700

TP63

tumor protein p63

involved_in
acts_upstream_of_or_within

(MGI:5295905|PMID:21930775)

PMID:21930775

GO_REF:0000107 MGI:5295905

NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,104...127,347,075

TTF1

transcription termination factor 1

acts_upstream_of_or_within

(MGI:85982|PMID:9049305)

PMID:9049305

MGI:85982

NCBI chr 1:272,180,488...272,212,504

TTF2

transcription termination factor 2

involved_in

GO_REF:0000108

NCBI chr 4:103,632,377...103,676,478
Ensembl chr 4:103,622,064...103,676,420

TTI1

TELO2 interacting protein 1

involved_in

(PMID:21873635)

NCBI chr17:41,047,408...41,094,038
Ensembl chr17:41,047,408...41,078,506

UCHL5

ubiquitin C-terminal hydrolase L5

involved_in

GO_REF:0000107

NCBI chr10:725,688...761,633
Ensembl chr10:725,489...764,006

VPS72

vacuolar protein sorting 72 homolog

involved_in

GO_REF:0000002

NCBI chr 4:98,062,261...98,074,074
Ensembl chr 4:98,062,256...98,074,059

YY1

YY1 transcription factor

involved_in

GO_REF:0000107

NCBI chr 7:121,132,168...121,170,699
Ensembl chr 7:121,131,917...121,170,697

ZBTB1

zinc finger and BTB domain containing 1

involved_in

GO_REF:0000107

NCBI chr 7:88,575,563...88,602,726
Ensembl chr 7:88,576,008...88,610,480

ZBTB7A

zinc finger and BTB domain containing 7A

involved_in

GO_REF:0000107

NCBI chr 2:74,678,293...74,699,347
Ensembl chr 2:74,681,192...74,695,975

ZNF827

zinc finger protein 827

involved_in

GO_REF:0000107

NCBI chr 8:82,596,560...82,783,691
Ensembl chr 8:82,596,659...82,783,691

ZNHIT1

zinc finger HIT-type containing 1

involved_in

GO_REF:0000002

NCBI chr 3:8,918,873...8,926,595
Ensembl chr 3:8,918,872...8,926,589

ZRANB3

zinc finger RANBP2-type containing 3

involved_in

GO_REF:0000108

NCBI chr15:16,414,291...16,727,659
Ensembl chr15:16,414,757...16,727,842

DNA methylation-dependent heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

DNMT1

DNA methyltransferase 1

involved_in

GO_REF:0000107

NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919

DNMT3A

DNA methyltransferase 3 alpha

involved_in
acts_upstream_of_or_within

(MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)

PMID:16322236 PMID:17938196

GO_REF:0000107 MGI:3611125 MGI:3768461

NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139

DNMT3B

DNA methyltransferase 3 beta

acts_upstream_of_or_within

(MGI:3768461|PMID:17938196)

PMID:17938196

MGI:3768461

NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074

HDAC1

histone deacetylase 1

involved_in

GO_REF:0000107

NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412

helicase, lymphoid specific

involved_in

(PMID:21873635)

NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998

KMT2B

lysine methyltransferase 2B

acts_upstream_of_or_within

(MGI:4849597|PMID:20808952)

PMID:20808952

MGI:4849597

NCBI chr 6:45,146,863...45,166,854
Ensembl chr 6:45,146,846...45,166,852

MBD2

methyl-CpG binding domain protein 2

involved_in

GO_REF:0000107

NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,683,065...103,752,427

MBD3

methyl-CpG binding domain protein 3

involved_in
acts_upstream_of_or_within

(MGI:3611125|PMID:16322236)

PMID:16322236

GO_REF:0000107 MGI:3611125

NCBI chr 2:76,913,880...76,923,435
Ensembl chr 2:76,906,644...76,923,435

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

acts_upstream_of_or_within

(MGI:3611125|PMID:16322236)

PMID:16322236

MGI:3611125

NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298

DNA replication-dependent chromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

anti-silencing function 1A histone chaperone

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913

anti-silencing function 1B histone chaperone

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681

CHAF1A

chromatin assembly factor 1 subunit A

involved_in

GO_REF:0000107

NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825

CHAF1B

chromatin assembly factor 1 subunit B

involved_in

Ensembl
Ensembl
InterPro

GO_REF:0000002 GO_REF:0000107

NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556

HAT1

histone acetyltransferase 1

involved_in

GO_REF:0000107

NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665

HIST1H3E

histone cluster 1, H3e

involved_in

(PMID:14718166)

NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784

importin 4

involved_in

GO_REF:0000107

NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741

importin 4

involved_in

GO_REF:0000107

NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741

LOC100158117

histone H4

involved_in

GO_REF:0000107

NCBI chr 7:21,595,863...21,596,243

LOC106504121

histone H3.1

involved_in

(PMID:14718166)

NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784

LOC110261477

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:20,773,579...20,773,986

LOC110261673

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379

LOC110261674

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:21,224,973...21,225,379

nuclear autoantigenic sperm protein

involved_in
acts_upstream_of_or_within

GO_Central
GO_Central
Ensembl
UniProt
Ensembl

(PMID:21873635)
(MGI:3694318|PMID:16728391)

PMID:16728391 PMID:21873635

GO_REF:0000107 MGI:3694318

NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369

RB binding protein 4, chromatin remodeling factor

involved_in

(PMID:14718166)

NCBI chr 6:88,987,092...89,006,815

DNA replication-independent chromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

anti-silencing function 1A histone chaperone

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913

anti-silencing function 1B histone chaperone

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681

ATRX

ATRX chromatin remodeler

involved_in

GO_REF:0000107

NCBI chr X:61,584,028...61,872,341
Ensembl chr X:61,584,848...61,872,288

CABIN1

calcineurin binding protein 1

involved_in

InterPro
InterPro
Ensembl
Ensembl

GO_REF:0000002 GO_REF:0000107

NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,197...49,787,688

H3-3A

H3 histone, family 3A

involved_in

GO_REF:0000107

NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000

HAT1

histone acetyltransferase 1

involved_in

GO_REF:0000107

NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665

HIRA

histone cell cycle regulator

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506

importin 4

involved_in

GO_REF:0000107

NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741

importin 4

involved_in

GO_REF:0000107

NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741

LOC100158117

histone H4

involved_in

GO_REF:0000107

NCBI chr 7:21,595,863...21,596,243

LOC100521680

histone H3.3

involved_in

GO_REF:0000107

NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726

LOC110261477

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:20,773,579...20,773,986

LOC110261673

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379

LOC110261674

histone H4

involved_in

(PMID:14718166)

NCBI chr 7:21,224,973...21,225,379

nuclear autoantigenic sperm protein

involved_in

GO_REF:0000107

NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369

RB binding protein 4, chromatin remodeling factor

involved_in

(PMID:14718166)

NCBI chr 6:88,987,092...89,006,815

UBN1

ubinuclein 1

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185

UBN2

ubinuclein 2

involved_in

(PMID:21873635)

NCBI chr18:10,371,121...10,451,243
Ensembl chr18:10,381,209...10,451,255

DNA replication-independent chromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

SUPT16H

SPT16 homolog, facilitates chromatin remodeling subunit

involved_in

(PMID:21873635)

NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505

dosage compensation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

H2A histone family, member Y

acts_upstream_of_or_within
involved_in

(PMID:15053874)

PMID:15053874

GO_REF:0000107

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

macroH2A.2 histone

acts_upstream_of_or_within
involved_in

(PMID:11331621)

PMID:11331621

GO_REF:0000107

NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226

dosage compensation by inactivation of X chromosome

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

BRCA1

BRCA1 DNA repair associated

involved_in
acts_upstream_of_or_within

GO_Central
Ensembl
GO_Central
MGI

(PMID:21873635)
(MGI:2389513|PMID:12419249)

PMID:12419249 PMID:21873635

GO_REF:0000107 MGI:2389513

NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570

EIF1

eukaryotic translation initiation factor 1

acts_upstream_of_or_within
involved_in

(MGI:3694307|PMID:16789828)

PMID:16789828

GO_REF:0000107 MGI:3694307

NCBI chr12:20,974,498...20,977,075
Ensembl chr12:20,974,496...20,977,062

EXOSC10

exosome component 10

involved_in
acts_upstream_of_or_within

(MGI:3694307|PMID:16789828)

Ensembl
MGI

PMID:16789828

GO_REF:0000107 MGI:3694307

NCBI chr 6:71,258,988...71,282,802
Ensembl chr 6:71,258,996...71,282,434

HNRNPU

heterogeneous nuclear ribonucleoprotein U

involved_in

GO_REF:0000107

NCBI chr10:17,475,266...17,497,060
Ensembl chr10:17,475,270...17,497,130

JARID2

jumonji and AT-rich interaction domain containing 2

acts_upstream_of_or_within
involved_in

(MGI:5888829|PMID:27892467)

PMID:27892467

GO_REF:0000107 MGI:5888829

NCBI chr 7:11,358,243...11,601,715
Ensembl chr 7:11,357,961...11,602,104

LRIF1

ligand dependent nuclear receptor interacting factor 1

involved_in

GO_REF:0000107

NCBI chr 4:109,271,562...109,292,313
Ensembl chr 4:109,271,728...109,292,310

METTL3

methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit

involved_in

GO_REF:0000107

NCBI chr 7:77,661,945...77,679,459
Ensembl chr 7:77,662,058...77,695,948

RBM15

RNA binding motif protein 15

involved_in

GO_REF:0000107

NCBI chr 4:109,767,464...109,791,555
Ensembl chr 4:109,769,869...109,786,235

RBM15B

RNA binding motif protein 15B

involved_in

GO_REF:0000107

NCBI chr13:33,664,387...33,671,047
Ensembl chr13:33,664,472...33,669,456

SMCHD1

structural maintenance of chromosomes flexible hinge domain containing 1

acts_upstream_of_or_within
involved_in

(MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746)

PMID:18425126 PMID:23754746

GO_REF:0000107 MGI:3821390 MGI:5532809

NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144

SUZ12

SUZ12 polycomb repressive complex 2 subunit

acts_upstream_of_or_within
involved_in

(MGI:5888829|PMID:27892467)

PMID:27892467

GO_REF:0000107 MGI:5888829

NCBI chr12:42,983,597...43,032,671
Ensembl chr12:42,983,997...43,032,644

UPF1

UPF1 RNA helicase and ATPase

involved_in

GO_REF:0000107

NCBI chr 2:58,975,013...59,013,546
Ensembl chr 2:58,975,015...59,013,495

YTHDC1

YTH domain containing 1

involved_in

GO_REF:0000107

NCBI chr 8:66,086,528...66,122,717
Ensembl chr 8:65,999,525...66,122,711

epigenetic maintenance of chromatin in transcription-competent conformation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CDCA4

cell division cycle associated 4

involved_in

(PMID:21873635)

checkpoint kinase 1

involved_in

GO_REF:0000107

NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706

EP300

E1A binding protein p300

involved_in

GO_REF:0000107

NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760

FAM47E

family with sequence similarity 47 member E

involved_in

(PMID:33376131)

ARUK-UCL

PMID:33376131

NCBI chr 8:71,940,297...71,965,843

H2A histone family, member Y

involved_in

GO_REF:0000107

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

LOC100624836

protein FAM47E-like

involved_in

(PMID:21873635)

NCBI chr X:33,004,811...33,006,091

MIR744

microRNA mir-744

acts_upstream_of_or_within

(MGI:5494393|PMID:22053081)

PMID:22053081

MGI:5494393

NCBI chr12:56,464,848...56,464,927
Ensembl chr12:56,464,848...56,464,927

NR3C1

nuclear receptor subfamily 3 group C member 1

involved_in

PMID:12917342

NCBI chr 2:144,822,937...144,956,451
Ensembl chr 2:144,822,937...144,956,095

PABPC1L

poly(A) binding protein cytoplasmic 1 like

acts_upstream_of_or_within
involved_in

(MGI:5688228|PMID:26134869)

PMID:26134869

GO_REF:0000107 MGI:5688228

NCBI chr17:47,321,259...47,351,905
Ensembl chr17:47,321,380...47,351,106

PADI2

peptidyl arginine deiminase 2

involved_in

GO_REF:0000107

NCBI chr 6:75,696,476...75,755,977
Ensembl chr 6:75,696,484...75,755,892

PHF2

PHD finger protein 2

involved_in

GO_REF:0000107

NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813

SERTAD1

SERTA domain containing 1

involved_in

(PMID:21873635)

NCBI chr 6:48,698,881...48,702,448
Ensembl chr 6:48,698,849...48,702,400

SERTAD2

SERTA domain containing 2

involved_in

(PMID:21873635)

NCBI chr 3:77,192,570...77,317,327
Ensembl chr 3:77,192,716...77,317,327

SMARCD1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

involved_in

GO_REF:0000107

NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,459...16,005,778

SPHK2

sphingosine kinase 2

involved_in

GO_REF:0000107

NCBI chr 6:53,982,911...53,986,779
Ensembl chr 6:53,979,012...53,986,770

STBD1

starch binding domain 1

involved_in

(PMID:21873635)

Ensembl
GO_Central

GO_REF:0000107

NCBI chr 8:71,982,987...71,987,880

VPS72

vacuolar protein sorting 72 homolog

involved_in

GO_REF:0000107

NCBI chr 4:98,062,261...98,074,074
Ensembl chr 4:98,062,256...98,074,059

WBP2

WW domain binding protein 2

involved_in

InterPro
InterPro
Ensembl
Ensembl

GO_REF:0000002 GO_REF:0000107

NCBI chr12:5,565,112...5,573,277
Ensembl chr12:5,565,136...5,574,586

ZMIZ1

zinc finger MIZ-type containing 1

involved_in

(PMID:21873635)

NCBI chr14:81,409,067...81,647,808
Ensembl chr14:81,455,127...81,647,949

ZMIZ2

zinc finger MIZ-type containing 2

involved_in

(PMID:21873635)

NCBI chr18:50,579,650...50,598,921
Ensembl chr18:50,579,653...50,598,653

genomic imprinting

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ASIP

agouti signaling protein

acts_upstream_of_or_within
involved_in

(MGI:2652932|PMID:12601169)

PMID:12601169

GO_REF:0000107 MGI:2652932

NCBI chr17:37,542,615...37,718,787

AXIN1

axin 1

acts_upstream_of_or_within
involved_in

(MGI:2652932|PMID:12601169)

PMID:12601169

GO_REF:0000107 MGI:2652932

NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997

CDKN1C

cyclin dependent kinase inhibitor 1C

acts_upstream_of_or_within

(MGI:3839493|PMID:19276117)

PMID:19276117

MGI:3839493

NCBI chr 2:2,019,391...2,022,092
Ensembl chr 2:2,019,490...2,021,853

CTCF

CCCTC-binding factor

involved_in

GO_REF:0000107

NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009

DNMT3L

DNA methyltransferase 3 like

involved_in
acts_upstream_of_or_within

(MGI:3663953|PMID:16920095)

PMID:16920095

GO_REF:0000107 MGI:3663953

NCBI chr13:207,119,025...207,141,990

GNAS

GNAS complex locus

involved_in
acts_upstream_of_or_within

(MGI:4454202|PMID:20427744)

PMID:20427744

GO_REF:0000107 MGI:4454202

NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021

NDN

necdin, MAGE family member

involved_in
acts_upstream_of_or_within

PMID:21873635 PMID:27841881

(MGI:1345919|PMID:10508517)

Ensembl
MGI

PMID:10508517

GO_REF:0000107 MGI:1345919

NCBI chr 1:142,412,688...142,413,665
Ensembl chr 1:142,412,565...142,414,240

ZDBF2

zinc finger DBF-type containing 2

acts_upstream_of_or_within
involved_in

ISO
IBA

(MGI:6151717|PMID:27841881)
(PMID:21873635)

MGI
GO_Central

MGI:6151717

NCBI chr15:109,563,445...109,593,858
Ensembl chr15:109,563,440...109,589,700

ZFP57

ZFP57 zinc finger protein

acts_upstream_of_or_within

(MGI:6506156|PMID:33500348)

PMID:33500348

MGI:6506156

NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064

heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

BAHD1

bromo adjacent homology domain containing 1

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 1:130,849,835...130,874,735
Ensembl chr 1:130,849,835...130,878,321

BAZ2A

bromodomain adjacent to zinc finger domain 2A

acts_upstream_of_or_within

(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)

PMID:16678107 PMID:20168299

MGI:3653583 MGI:4462332

NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021

BMI1

BMI1 proto-oncogene, polycomb ring finger

involved_in

(PMID:21873635)

NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,280...52,596,376

CBX3

chromobox 3

involved_in

GO_REF:0000107

NCBI chr18:46,193,138...46,205,114
Ensembl chr18:46,193,138...46,204,714

CTBP1

C-terminal binding protein 1

involved_in

GO_REF:0000107

NCBI chr 8:475,164...496,510
Ensembl chr 8:475,082...495,984

DOT1L

DOT1 like histone lysine methyltransferase

involved_in

GO_REF:0000002

NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966

EED

embryonic ectoderm development

involved_in

(PMID:21873635)

NCBI chr 9:20,123,077...20,158,747
Ensembl chr 9:20,123,857...20,158,816

EZH1

enhancer of zeste 1 polycomb repressive complex 2 subunit

involved_in

(PMID:21873635)

NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749

enhancer of zeste 2 polycomb repressive complex 2 subunit

involved_in

(PMID:21873635)

NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941

H2A histone family, member Y

involved_in

(PMID:21873635)

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

H2AFZ

H2A histone family, member Z

involved_in

(PMID:21873635)

NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,034

helicase, lymphoid specific

acts_upstream_of_or_within

(MGI:3510059|PMID:15448183)

PMID:15448183

MGI:3510059

NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998

HMGA2

high mobility group AT-hook 2

involved_in

(PMID:16901784)

PMID:16901784

NCBI chr 5:30,188,521...30,329,635

HMGB1

high mobility group box 1

involved_in

(PMID:19158276)

PMID:19158276

NCBI chr11:7,195,556...7,321,071

KMT2D

lysine methyltransferase 2D

involved_in

(MGI:4849597|PMID:20808952)

PMID:20808952

MGI:4849597

NCBI chr 5:15,049,827...15,091,622

L3MBTL1

L3MBTL histone methyl-lysine binding protein 1

involved_in

(PMID:17540172)

ComplexPortal

PMID:17540172

NCBI chr17:46,135,567...46,176,967
Ensembl chr17:46,119,409...46,173,944

LMNA

lamin A/C

involved_in

(PMID:21873635)

NCBI chr 4:93,899,019...93,927,255
Ensembl chr 4:93,899,026...93,949,398

LMNB1

lamin B1

involved_in

(PMID:21873635)

NCBI chr 2:129,807,228...129,862,211
Ensembl chr 2:129,807,318...129,871,725

LMNB2

lamin B2

involved_in

(PMID:21873635)

NCBI chr 2:76,125,932...76,146,564
Ensembl chr 2:76,125,926...76,146,733

LOC100154071

histone H2A type 1-like

involved_in

(PMID:21873635)

NCBI chr 7:21,592,937...21,593,433

LOC100154181

histone H2A type 2-B

involved_in

(PMID:21873635)

NCBI chr 4:99,168,195...99,168,679
Ensembl chr 4:99,168,255...99,168,647

LOC100155734

histone H2A type 1

involved_in

(PMID:21873635)

NCBI chr 7:20,863,594...20,864,115
Ensembl chr 7:20,789,769...20,867,386

LOC100157763

histone H2A type 1-H

involved_in

(PMID:21873635)

NCBI chr 7:21,582,735...21,583,552
Ensembl chr 7:21,226,552...21,232,705

LOC100158121

histone H2A type 1

involved_in

(PMID:21873635)

NCBI chr 7:20,857,026...20,858,357
Ensembl chr 7:21,632,862...21,936,037

LOC100359361

high mobility group AT-hook 2-like

involved_in

ISS

GO_REF:0000024

NCBI chr 1:191,094,785...191,105,394

LOC100510904

histone H1.0

involved_in

GO_REF:0000107

NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080

LOC100512448

histone H2A.V

involved_in

(PMID:21873635)

NCBI chr18:50,533,382...50,548,341
Ensembl chr18:50,533,429...50,556,439

LOC100520991

histone H2A-Bbd type 1-like

involved_in

(PMID:21873635)

NCBI chr X:32,692,523...32,693,072

LOC100620620

histone H2A-Bbd type 2/3

involved_in

(PMID:21873635)

NCBI chr X:125,537,401...125,540,026

LOC100621538

histone H2A type 3

involved_in

(PMID:21873635)

NCBI chr 2:51,688,375...51,704,824
Ensembl chr 2:51,693,853...51,694,245

LOC100622387

histone H2A type 1

involved_in

(PMID:21873635)

NCBI chr 7:21,632,867...21,633,939
Ensembl chr 7:21,632,862...21,936,037

LOC100625850

histone H2A.J

involved_in

(PMID:21873635)

NCBI chr 5:57,777,008...57,777,673
Ensembl chr 5:57,777,010...57,777,654

LOC102159655

histone H2A type 2-A-like

involved_in

(PMID:21873635)

NCBI chr 4:99,197,499...99,198,164
Ensembl chr 4:99,197,661...99,198,053

LOC106510170

histone H2A type 2-C

involved_in

(PMID:21873635)

NCBI chr 4:99,168,743...99,169,270
Ensembl chr 4:99,168,806...99,169,195

LOC110255320

lysine-specific demethylase 6A-like

acts_upstream_of_or_within

(MGI:5305502|PMID:22192413)

PMID:22192413

MGI:5305502

NCBI chr Y:8,937,949...9,087,971

macroH2A.2 histone

involved_in

(PMID:21873635)

NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226

MECP2

methyl-CpG binding protein 2

acts_upstream_of_or_within
involved_in

(MGI:3530434|PMID:15608638)

PMID:15608638

GO_REF:0000107 MGI:3530434

NCBI chr X:124,735,523...124,789,063
Ensembl chr X:124,735,656...124,789,110

MORF4L1

mortality factor 4 like 1

involved_in

(PMID:21873635)

NCBI chr 7:48,050,050...48,075,799
Ensembl chr 7:48,050,045...48,075,796

MORF4L2

mortality factor 4 like 2

involved_in

(PMID:21873635)

NCBI chr X:84,553,770...84,566,304
Ensembl chr X:84,552,705...84,569,030

MSL3

MSL complex subunit 3

involved_in

(PMID:21873635)

NCBI chr X:8,519,366...8,535,249
Ensembl chr X:8,518,835...8,535,249

PCGF2

polycomb group ring finger 2

involved_in

(PMID:21873635)

NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775

POLE3

DNA polymerase epsilon 3, accessory subunit

involved_in

(PMID:21873635)

NCBI chr 1:254,033,378...254,036,224

PPM1D

protein phosphatase, Mg2+/Mn2+ dependent 1D

involved_in

GO_REF:0000107

NCBI chr12:37,485,601...37,536,159
Ensembl chr12:37,485,586...37,536,146

RB1

RB transcriptional corepressor 1

involved_in

GO_REF:0000107

NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,759...19,317,690

RB binding protein 4, chromatin remodeling factor

involved_in

(PMID:21873635)

NCBI chr 6:88,987,092...89,006,815

RBBP7

RB binding protein 7, chromatin remodeling factor

involved_in

(PMID:21873635)

NCBI chr X:13,293,278...13,317,074
Ensembl chr X:13,280,977...13,317,079

SIRT1

sirtuin 1

involved_in

GO_REF:0000107

NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

involved_in

GO_REF:0000107

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

SPT2 chromatin protein domain containing 1

involved_in

(PMID:26109053)

PMID:26109053

NCBI chr 2:40,581,816...40,604,040

TNP1

transition protein 1

involved_in

GO_REF:0000024 GO_REF:0000107

NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105

UBR2

ubiquitin protein ligase E3 component n-recognin 2

involved_in

(PMID:21873635)

GO_Central
Ensembl

GO_REF:0000107

NCBI chr 7:37,655,808...37,785,301
Ensembl chr 7:37,655,847...37,784,359

heterochromatin assembly by small RNA

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

FAM172A

family with sequence similarity 172 member A

involved_in

(PMID:21873635)

NCBI chr 2:100,477,770...100,893,594
Ensembl chr 2:100,477,775...100,893,580

NRDE2

NRDE-2, necessary for RNA interference, domain containing

involved_in

(PMID:21873635)

NCBI chr 7:112,039,949...112,090,632
Ensembl chr 7:112,038,234...112,090,511

TRMT10C

tRNA methyltransferase 10C, mitochondrial RNase P subunit

involved_in

(PMID:21873635)

NCBI chr13:157,495,075...157,522,349
Ensembl chr13:157,497,562...157,504,418

ZNFX1

zinc finger NFX1-type containing 1

involved_in

(PMID:21873635)

NCBI chr17:50,925,789...50,958,722
Ensembl chr17:50,925,789...50,958,705

heterochromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

HDAC2

histone deacetylase 2

involved_in

GO_REF:0000107

NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585

HP1BP3

heterochromatin protein 1 binding protein 3

involved_in

InterPro
GO_Central
InterPro
Ensembl
GO_Central

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214

LOXL2

lysyl oxidase like 2

involved_in

GO_REF:0000107

NCBI chr14:7,435,861...7,540,699
Ensembl chr14:7,435,863...7,540,704

MECOM

MDS1 and EVI1 complex locus

involved_in

(MGI:6274969|PMID:22939622)

PMID:22939622

MGI:6274969

NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,480...108,335,503

MTHFR

methylenetetrahydrofolate reductase

involved_in
acts_upstream_of

(PMID:24769206)

Ensembl
Ensembl
BHF-UCL

PMID:24769206

GO_REF:0000107

NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,636...71,881,820

PRDM16

PR/SET domain 16

involved_in

(MGI:6274969|PMID:22939622)

Ensembl
GO_Central
Ensembl
MGI

PMID:22939622

MGI:6274969

NCBI chr 6:64,704,181...65,012,580
Ensembl chr 6:64,704,468...65,012,575

SETD7

SET domain containing 7, histone lysine methyltransferase

involved_in
acts_upstream_of_or_within

IEA
IBA
ISO

(PMID:21873635)
(PMID:23509280)
(MGI:5471848|PMID:23509280)

PMID:21873635 PMID:23509280

GO_REF:0000107 MGI:5471848

NCBI chr 8:87,478,266...87,527,190
Ensembl chr 8:87,477,808...87,527,190

SETDB1

SET domain bifurcated histone lysine methyltransferase 1

involved_in

(PMID:21873635)

NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096

SNAI1

snail family transcriptional repressor 1

involved_in

GO_REF:0000107

NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,393...51,552,504

histone exchange

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ACTR6

actin related protein 6

involved_in

(PMID:21873635)

NCBI chr 5:83,909,415...83,929,076
Ensembl chr 5:83,908,876...83,929,054

ANP32E

acidic nuclear phosphoprotein 32 family member E

involved_in

GO_REF:0000107

NCBI chr 4:98,849,114...98,869,095
Ensembl chr 4:98,820,920...98,869,140

CMTR1

cap methyltransferase 1

involved_in

GO_REF:0000107

NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739

DMAP1

DNA methyltransferase 1 associated protein 1

involved_in

(PMID:21873635)

NCBI chr 6:167,083,053...167,091,654
Ensembl chr 6:167,082,846...167,091,630

LOC100152601

acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene

involved_in

(PMID:21873635)

NCBI chr X:61,053,747...61,055,034

nuclear autoantigenic sperm protein

involved_in

(MGI:3693383|PMID:12509435)

PMID:12509435

MGI:3693383

NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369

PTMA

prothymosin alpha

acts_upstream_of_or_within

(MGI:4457993|PMID:20434447)

PMID:20434447

MGI:4457993

NCBI chr15:132,353,763...132,361,442
Ensembl chr15:132,355,655...132,361,435

RNF8

ring finger protein 8

involved_in

GO_REF:0000107

NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739

SPT2 chromatin protein domain containing 1

involved_in

(PMID:21873635)

NCBI chr 2:40,581,816...40,604,040

SRCAP

Snf2 related CREBBP activator protein

involved_in

(PMID:21873635)

NCBI chr 3:17,662,374...17,702,862

VPS72

vacuolar protein sorting 72 homolog

involved_in

GO_Central
GO_Central
InterPro

(PMID:21873635)

GO_REF:0000002

NCBI chr 4:98,062,261...98,074,074
Ensembl chr 4:98,062,256...98,074,059

ZNHIT1

zinc finger HIT-type containing 1

involved_in

GO_Central
GO_Central
InterPro

(PMID:21873635)

GO_REF:0000002

NCBI chr 3:8,918,873...8,926,595
Ensembl chr 3:8,918,872...8,926,589

inactivation of paternal X chromosome

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

PRDM14

PR/SET domain 14

involved_in
acts_upstream_of_or_within

(MGI:5548017|PMID:24268575)

PMID:24268575

GO_REF:0000107 MGI:5548017

NCBI chr 4:65,273,988...65,295,362
Ensembl chr 4:65,274,003...65,295,600

inactivation of X chromosome by genomic imprinting

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

PCGF3

polycomb group ring finger 3

involved_in

GO_REF:0000107

NCBI chr 8:140,435...189,796
Ensembl chr 8:140,446...182,261

PCGF5

polycomb group ring finger 5

involved_in

(PMID:21873635)

NCBI chr14:102,827,140...102,961,862
Ensembl chr14:102,636,838...102,961,860

inactivation of X chromosome by heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

SMCHD1

structural maintenance of chromosomes flexible hinge domain containing 1

involved_in

GO_REF:0000107

NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144

negative regulation of DNA methylation-dependent heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

AICDA

activation induced cytidine deaminase

involved_in

GO_REF:0000107

NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483

APOBEC1

apolipoprotein B mRNA editing enzyme catalytic subunit 1

involved_in

GO_REF:0000107

NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173

TET1

tet methylcytosine dioxygenase 1

involved_in

GO_REF:0000107

NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621

negative regulation of gene expression, epigenetic

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

BMI1

BMI1 proto-oncogene, polycomb ring finger

involved_in

GO_REF:0000107

NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,280...52,596,376

CREBZF

CREB/ATF bZIP transcription factor

involved_in

GO_REF:0000107

NCBI chr 9:19,589,617...19,595,114
Ensembl chr 9:19,589,680...19,595,049

DNMT3B

DNA methyltransferase 3 beta

involved_in

(MGI:3765099|PMID:18056424)

PMID:18056424

MGI:3765099

NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074

EPC1

enhancer of polycomb homolog 1

acts_upstream_of_or_within
involved_in

(PMID:10976108)

PMID:10976108

GO_REF:0000107

NCBI chr10:42,835,280...42,946,859
Ensembl chr10:42,835,285...42,947,524

enhancer of zeste 2 polycomb repressive complex 2 subunit

involved_in

GO_REF:0000107

NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941

H2A histone family, member Y

involved_in

GO_REF:0000107

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

LHX2

LIM homeobox 2

involved_in

GO_REF:0000107

NCBI chr 1:264,900,931...264,920,888
Ensembl chr 1:264,900,591...264,920,913

macroH2A.2 histone

involved_in

GO_REF:0000107

NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226

MORC2

MORC family CW-type zinc finger 2

involved_in

GO_REF:0000107

NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643

MPHOSPH8

M-phase phosphoprotein 8

involved_in

GO_REF:0000107

NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121

PPHLN1

periphilin 1

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 5:73,556,205...73,696,403
Ensembl chr 5:73,496,820...73,709,342

PPM1D

protein phosphatase, Mg2+/Mn2+ dependent 1D

involved_in

(PMID:21873635)

Ensembl
GO_Central

GO_REF:0000107

NCBI chr12:37,485,601...37,536,159
Ensembl chr12:37,485,586...37,536,146

RIF1

replication timing regulatory factor 1

involved_in

GO_REF:0000107

NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010

SIRT6

sirtuin 6

involved_in

GO_REF:0000107

NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772

SMYD5

SMYD family member 5

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 3:69,552,731...69,566,013
Ensembl chr 3:69,552,731...69,571,128

SMYD5

SMYD family member 5

involved_in

GO_REF:0000107

NCBI chr 3:69,566,112...69,571,165
Ensembl chr 3:69,552,731...69,571,128

SPI1

Spi-1 proto-oncogene

involved_in

GO_REF:0000107

NCBI chr 2:15,227,850...15,245,679
Ensembl chr 2:15,227,829...15,245,667

TASOR

transcription activation suppressor

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931

TRIM27

tripartite motif containing 27

acts_upstream_of_or_within
involved_in

(PMID:10976108)

PMID:10976108

GO_REF:0000107

negative regulation of ribosomal DNA heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

PHF2

PHD finger protein 2

involved_in

GO_REF:0000107

NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813

PHF8

PHD finger protein 8

involved_in

GO_REF:0000107

NCBI chr X:46,648,164...46,761,192
Ensembl chr X:46,648,165...46,759,248

nucleolar chromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

DDX11

DEAD/H-box helicase 11

involved_in

GO_REF:0000107

NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111

nucleosome assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ANP32B

acidic nuclear phosphoprotein 32 family member B

involved_in

GO_REF:0000107

NCBI chr 1:239,842,062...239,868,404
Ensembl chr 1:239,842,063...239,919,984

anti-silencing function 1A histone chaperone

acts_upstream_of_or_within
involved_in

(PMID:11897662)

PMID:11897662

GO_REF:0000107

NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913

anti-silencing function 1B histone chaperone

acts_upstream_of_or_within
involved_in

(MGI:2675150|PMID:12842904)

PMID:12842904

GO_REF:0000107 MGI:2675150

NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681

ATRX

ATRX chromatin remodeler

involved_in

GO_REF:0000107

NCBI chr X:61,584,028...61,872,341
Ensembl chr X:61,584,848...61,872,288

BAZ1A

bromodomain adjacent to zinc finger domain 1A

involved_in

GO_REF:0000107

NCBI chr 7:64,969,626...65,069,969
Ensembl chr 7:64,877,674...65,069,889

BRD2

bromodomain containing 2

involved_in

GO_REF:0000107

NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433

CHAF1B

chromatin assembly factor 1 subunit B

involved_in

(PMID:21873635)

NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556

CHRAC1

chromatin accessibility complex subunit 1

involved_in

GO_REF:0000107

NCBI chr 4:3,014,171...3,028,808
Ensembl chr 4:3,024,615...3,028,725

DAXX

death domain associated protein

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110

DNAJC9

DnaJ heat shock protein family (Hsp40) member C9

involved_in

GO_REF:0000107

NCBI chr14:76,064,598...76,070,301
Ensembl chr14:76,061,446...76,074,604

GRWD1

glutamate rich WD repeat containing 1

involved_in

GO_REF:0000107

NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385

H1-2

H1.2 linker histone, cluster member

involved_in

GO_REF:0000002

NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356

H1-3

H1.3 linker histone, cluster member

involved_in

GO_REF:0000002

Ensembl chr 7:20,862,942...20,882,693

H1-4

H1.4 linker histone, cluster member

involved_in

GO_REF:0000002

Ensembl chr 7:20,819,639...20,854,590

H1-6

H1.6 linker histone, cluster member

involved_in

GO_REF:0000002

NCBI chr 7:20,774,135...20,777,244

H1FOO

oocyte-specific H1 histone

involved_in

GO_REF:0000002

NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744

H2A histone family, member Y

involved_in

UniProt
InterPro
UniProt

GO_REF:0000002 GO_REF:0000104

NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889

H2BC11

H2B clustered histone 11

involved_in

(PMID:21873635)

Ensembl chr 7:21,219,627...21,227,153

H3-3A

H3 histone, family 3A

involved_in

GO_REF:0000107

NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000

HIST1H2BD

histone cluster 1, H2bd

involved_in

GO_Central
InterPro
GO_Central

(PMID:21873635)

GO_REF:0000002

NCBI chr 7:20,821,090...20,829,491
Ensembl chr 7:20,821,091...20,829,493

HIST1H3E

histone cluster 1, H3e

involved_in

(PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)

PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412

NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784

HMGB1

high mobility group box 1

involved_in

IDA

(PMID:2465778)

AgBase
AgBase

PMID:2465778

NCBI chr11:7,195,556...7,321,071

HMGB2

high mobility group box 2

involved_in

IDA

(PMID:2465778)

AgBase
AgBase

PMID:2465778

NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126

HP1BP3

heterochromatin protein 1 binding protein 3

involved_in

GO_REF:0000002

NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214

KAT6B

lysine acetyltransferase 6B

involved_in

GO_REF:0000002

NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,375,758...77,597,674

LOC100152135

histone H2B type 1-A-like

involved_in
acts_upstream_of_or_within

GO_Central
Ensembl
GO_Central
MGI

(PMID:21873635)
(MGI:3702345|PMID:17261847)

PMID:17261847 PMID:21873635

GO_REF:0000107 MGI:3702345

NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512

LOC100152878

histone H2B type 1-A

involved_in

(PMID:21873635)

NCBI chr 7:20,467,395...20,471,314

LOC100155267

histone H2B type 2-F-like

involved_in

(PMID:21873635)

NCBI chr14:45,760,877...45,761,561

LOC100156127

histone H2B type 1-M

involved_in

(PMID:21873635)

NCBI chr 7:20,842,185...20,842,659

LOC100156741

histone cluster 2, H3-like

involved_in

GO_REF:0000107

NCBI chr 4:99,199,243...99,199,653

LOC100156937

histone H2B type 1

involved_in

(PMID:21873635)

NCBI chr 7:20,862,784...20,863,395
Ensembl chr 7:20,897,623...20,907,522

LOC100158117

histone H4

involved_in

(PMID:21873635)

NCBI chr 7:21,595,863...21,596,243

LOC100510904

histone H1.0

involved_in

GO_REF:0000002

NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080

LOC100515302

histone H2B type 3-B

involved_in

(PMID:21873635)

NCBI chr 2:51,687,852...51,694,237
Ensembl chr 2:51,693,136...51,693,516

LOC100516295

histone H1x

involved_in

GO_REF:0000002

NCBI chr13:71,760,464...71,762,035

LOC100517800

histone H2A-Bbd type 2/3

involved_in

(PMID:22795134)

PMID:22795134

NCBI chr X:125,277,575...125,280,752

LOC100519930

histone H2B subacrosomal variant-like

involved_in

(PMID:21873635)

NCBI chr16:49,000,352...49,001,341

LOC100521680

histone H3.3

involved_in

GO_REF:0000107

NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726

LOC100525798

nucleosome assembly protein 1-like 2

involved_in

GO_Central
GO_Central
InterPro

(PMID:21873635)

GO_REF:0000002

NCBI chr X:58,969,577...59,176,807
Ensembl chr X:58,966,830...58,972,091

LOC100625034

testis-specific Y-encoded protein 4-like

involved_in

GO_REF:0000002

NCBI chr Y:40,190,400...40,192,431

LOC100738859

histone H2B type 2-E

involved_in

(PMID:21873635)

NCBI chr 4:99,169,471...99,171,665
Ensembl chr 4:99,169,485...99,186,310

LOC102160938

late histone H2B.L4-like

involved_in

(PMID:21873635)

NCBI chr18:6,017,053...6,022,069
Ensembl chr18:6,019,516...6,022,049

LOC102161782

histone H3

involved_in

(PMID:21636898), (PMID:25615412)

PMID:21636898 PMID:25615412

NCBI chr 4:99,187,225...99,187,722

LOC102162202

histone H2B type 2-E

involved_in

(PMID:21873635)

NCBI chr 4:99,189,505...99,191,226
Ensembl chr 4:99,169,485...99,186,310

LOC106504121

histone H3.1

involved_in

(PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)

PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412

NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784

LOC106506652

putative testis-specific Y-encoded-like protein 3

involved_in

GO_REF:0000002

NCBI chr17:35,836,203...35,838,807

LOC110259305

histone H3.1

involved_in

(PMID:25615412)
(PMID:20498094)

PMID:20498094 PMID:25615412

NCBI chr 2:51,709,942...51,710,952

LOC110261477

histone H4

involved_in

(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)

PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412

NCBI chr 7:20,773,579...20,773,986

LOC110261669

histone H2B type 1

involved_in

GO_REF:0000002

NCBI chr 7:20,897,783...20,898,253

LOC110261673

histone H4

involved_in

(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)

PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412

NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379

LOC110261674

histone H4

involved_in

(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)

PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412

NCBI chr 7:21,224,973...21,225,379

LOC595122

histone H1.3-like protein

involved_in

GO_REF:0000002

NCBI chr 7:20,881,642...20,882,307

macroH2A.2 histone

involved_in

GO_REF:0000002 GO_REF:0000104

NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226

MCM2

minichromosome maintenance complex component 2

involved_in
acts_upstream_of_or_within

(MGI:2156014|PMID:10531422)

PMID:10531422

GO_REF:0000107 MGI:2156014

NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620

NAA60

N-alpha-acetyltransferase 60, NatF catalytic subunit

involved_in

GO_REF:0000107

NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,755,420...38,782,056

NAP1L1

nucleosome assembly protein 1 like 1

involved_in

InterPro
GO_Central
InterPro
GO_Central

(PMID:21873635)

GO_REF:0000002

NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,051...39,363,711

NAP1L4

nucleosome assembly protein 1 like 4

involved_in

GO_Central
GO_Central
InterPro
Ensembl
InterPro

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,067,870...2,117,487

NAP1L5

nucleosome assembly protein 1 like 5

involved_in

GO_REF:0000002

NCBI chr 8:130,364,566...130,365,464
Ensembl chr 8:130,364,566...130,365,464

nuclear autoantigenic sperm protein

involved_in

(PMID:25615412)

PMID:25615412

NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369

NEFH

neurofilament heavy chain

involved_in

GO_REF:0000002

NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910

NPM1

nucleophosmin 1

involved_in

GO_REF:0000107

NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740

PADI4

peptidyl arginine deiminase 4

involved_in

GO_REF:0000107

NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169

POLE3

DNA polymerase epsilon 3, accessory subunit

involved_in

GO_REF:0000107

NCBI chr 1:254,033,378...254,036,224

RSF1

remodeling and spacing factor 1

involved_in

GO_REF:0000107

NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120

SART3

spliceosome associated factor 3, U4/U6 recycling protein

involved_in

GO_REF:0000107

NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113

SET

SET nuclear proto-oncogene

involved_in

GO_REF:0000002

NCBI chr 1:269,050,447...269,064,462

SHPRH

SNF2 histone linker PHD RING helicase

involved_in

GO_REF:0000002

NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,823...19,695,272

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

involved_in

GO_REF:0000107

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

SMYD3

SET and MYND domain containing 3

involved_in
acts_upstream_of_or_within

(MGI:5500979|PMID:23752591)

Ensembl
Ensembl
UniProt
UniProt

PMID:23752591

GO_REF:0000107 MGI:5500979

NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537

SOX9

SRY-box transcription factor 9

involved_in

IEA
ISS

GO_REF:0000024 GO_REF:0000107

NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315

SPT2 chromatin protein domain containing 1

involved_in

(PMID:21873635)

NCBI chr 2:40,581,816...40,604,040

TSPYL1

TSPY like 1

involved_in

GO_REF:0000002

NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,613

TSPYL2

TSPY like 2

involved_in

GO_REF:0000002

NCBI chr X:45,909,688...45,916,859
Ensembl chr X:45,909,686...45,916,941

TSPYL4

TSPY like 4

involved_in

GO_REF:0000002

NCBI chr 1:81,888,946...81,893,643

TSPYL5

TSPY like 5

involved_in

GO_REF:0000002

NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,962...39,369,885

nucleosome disassembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ARID1A

AT-rich interaction domain 1A

involved_in

GO_REF:0000107

NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384

ARID2

AT-rich interaction domain 2

involved_in

GO_REF:0000107

NCBI chr 5:76,637,385...76,800,155
Ensembl chr 5:76,637,202...76,847,316

GRWD1

glutamate rich WD repeat containing 1

involved_in

GO_REF:0000107

NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385

LOC100152135

histone H2B type 1-A-like

involved_in

(MGI:5502464|PMID:23884607)

PMID:23884607

MGI:5502464

NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512

LOC100621538

histone H2A type 3

involved_in

(PMID:22334663)

PMID:22334663

NCBI chr 2:51,688,375...51,704,824
Ensembl chr 2:51,693,853...51,694,245

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

involved_in

RGD
Ensembl
Ensembl

PMID:9001244

GO_REF:0000107 RGD:634124

NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298

SMARCB1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

involved_in

GO_REF:0000107

NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048

SMARCC1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1

involved_in

GO_REF:0000107

NCBI chr13:30,409,979...30,576,270
Ensembl chr13:30,409,982...30,601,441

SMARCC2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2

involved_in

(PMID:8895581)

BHF-UCL

PMID:8895581

NCBI chr 5:21,563,426...21,586,790
Ensembl chr 5:21,563,402...21,586,727

SMARCD1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

involved_in

GO_REF:0000107

NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,459...16,005,778

SMARCD2

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

involved_in

GO_REF:0000107

NCBI chr12:15,091,926...15,101,899
Ensembl chr12:15,091,733...15,101,899

SMARCD3

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3

involved_in

GO_REF:0000107

NCBI chr18:5,958,466...5,989,120
Ensembl chr18:5,958,481...5,990,025

SMARCE1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1

involved_in

GO_REF:0000107

NCBI chr12:21,784,410...21,807,170
Ensembl chr12:21,784,426...21,807,170

SSRP1

structure specific recognition protein 1

involved_in

GO_REF:0000107

NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,233

SUPT16H

SPT16 homolog, facilitates chromatin remodeling subunit

involved_in

GO_REF:0000107

NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505

TNP1

transition protein 1

involved_in

GO_REF:0000024 GO_REF:0000107

NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105

nucleosome organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CHD1

chromodomain helicase DNA binding protein 1

involved_in

(PMID:21873635)

NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,152

CHD2

chromodomain helicase DNA binding protein 2

involved_in

(PMID:21873635)

NCBI chr 7:85,980,759...86,107,886
Ensembl chr 7:85,980,759...86,107,859

LIN54

lin-54 DREAM MuvB core complex component

acts_upstream_of_or_within
involved_in

(PMID:27465258)

ARUK-UCL
Ensembl

PMID:27465258

GO_REF:0000107

NCBI chr 8:135,330,868...135,398,274
Ensembl chr 8:135,330,917...135,398,269

MCM3AP

minichromosome maintenance complex component 3 associated protein

involved_in

GO_REF:0000107

SETD2

SET domain containing 2, histone lysine methyltransferase

involved_in

GO_REF:0000107

NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360

SUPT6H

SPT6 homolog, histone chaperone and transcription elongation factor

involved_in

(PMID:21873635)

NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,906,858...44,952,427

pericentric heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CENPV

centromere protein V

involved_in

(PMID:21873635)

NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664

DICER1

dicer 1, ribonuclease III

acts_upstream_of_or_within

(MGI:3528782|PMID:15713842)

PMID:15713842

MGI:3528782

NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519

H3-3A

H3 histone, family 3A

acts_upstream_of_or_within
involved_in

(MGI:5694896|PMID:26159997)

PMID:26159997

GO_REF:0000107 MGI:5694896

NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000

helicase, lymphoid specific

involved_in

(PMID:21873635)

NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998

LOC100521680

histone H3.3

acts_upstream_of_or_within
involved_in

(MGI:5694896|PMID:26159997)

PMID:26159997

GO_REF:0000107 MGI:5694896

NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726

SIRT6

sirtuin 6

involved_in

GO_REF:0000107

NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772

pericentric heterochromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

WDHD1

WD repeat and HMG-box DNA binding protein 1

acts_upstream_of_or_within

(MGI:5317038|PMID:21266480)

PMID:21266480

MGI:5317038

NCBI chr 1:184,300,291...184,378,974
Ensembl chr 1:184,300,291...184,378,959

positive regulation of chromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

TAL1

TAL bHLH transcription factor 1, erythroid differentiation factor

involved_in

GO_REF:0000107

NCBI chr 6:164,282,242...164,297,636
Ensembl chr 6:164,281,737...164,297,637

positive regulation of DNA methylation-dependent heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ATF7IP

activating transcription factor 7 interacting protein

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr 5:58,022,734...58,149,980
Ensembl chr 5:58,022,740...58,150,185

ATF7IP2

activating transcription factor 7 interacting protein 2

involved_in

(PMID:21873635)

NCBI chr 3:32,523,462...32,598,946
Ensembl chr 3:32,523,461...32,598,855

DNMT1

DNA methyltransferase 1

involved_in

GO_REF:0000107

NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919

MORC2

MORC family CW-type zinc finger 2

involved_in

GO_REF:0000107

NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643

MPHOSPH8

M-phase phosphoprotein 8

involved_in

GO_REF:0000107

NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121

PPHLN1

periphilin 1

involved_in

GO_REF:0000107

NCBI chr 5:73,556,205...73,696,403
Ensembl chr 5:73,496,820...73,709,342

RESF1

retroelement silencing factor 1

involved_in

(PMID:21873635)

NCBI chr 5:42,263,560...42,299,596
Ensembl chr 5:42,261,290...42,299,514

SETDB1

SET domain bifurcated histone lysine methyltransferase 1

involved_in

(PMID:21873635)

NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096

TASOR

transcription activation suppressor

involved_in

(PMID:21873635)

GO_REF:0000107

NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931

TRIM28

tripartite motif containing 28

involved_in

GO_REF:0000107

NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532

ZNF304

zinc finger protein 304

involved_in

GO_REF:0000107

NCBI chr 6:61,740,677...61,790,290
Ensembl chr 6:61,695,111...61,784,106

positive regulation of heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CDK2

cyclin dependent kinase 2

involved_in

GO_REF:0000107

NCBI chr 5:21,365,723...21,372,170
Ensembl chr 5:21,365,763...21,392,726

RAB5B

RAB5B, member RAS oncogene family

involved_in

GO_REF:0000107

NCBI chr 5:21,373,333...21,392,729
Ensembl chr 5:21,365,763...21,392,726

SIN3A

SIN3 transcription regulator family member A

involved_in

GO_REF:0000107

NCBI chr 7:58,171,821...58,246,126
Ensembl chr 7:58,176,166...58,245,762

TPR

translocated promoter region, nuclear basket protein

involved_in

GO_REF:0000107

NCBI chr 9:127,481,678...127,540,393
Ensembl chr 9:127,481,684...127,540,790

positive regulation of histone exchange

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

KAT5

lysine acetyltransferase 5

involved_in

GO_REF:0000107

NCBI chr 2:6,560,544...6,572,461
Ensembl chr 2:6,560,513...6,572,466

programmed DNA elimination by chromosome breakage

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

HMGA2

high mobility group AT-hook 2

involved_in

(PMID:19549901)

PMID:19549901

NCBI chr 5:30,188,521...30,329,635

RFWD3

ring finger and WD repeat domain 3

involved_in

GO_REF:0000107

NCBI chr 6:12,952,243...12,994,053
Ensembl chr 6:12,952,350...12,994,050

random inactivation of X chromosome

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CDYL

chromodomain Y like

involved_in

GO_REF:0000107

NCBI chr 7:2,845,903...2,967,537
Ensembl chr 7:2,785,405...2,966,241

LOC100151952

E3 ubiquitin-protein ligase RLIM-like

involved_in

(PMID:21873635)

NCBI chr X:30,364,427...30,367,647

RLIM

ring finger protein, LIM domain interacting

involved_in

GO_REF:0000107

NCBI chr X:59,889,799...59,920,464
Ensembl chr X:59,893,146...59,920,182

rDNA heterochromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

BAZ2A

bromodomain adjacent to zinc finger domain 2A

involved_in
acts_upstream_of_or_within

PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299

UniProt
MGI

MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332

NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021

BEND3

BEN domain containing 3

involved_in

GO_Central
InterPro
Ensembl
GO_Central

(PMID:21873635)

GO_REF:0000002 GO_REF:0000107

NCBI chr 1:73,184,745...73,224,663
Ensembl chr 1:73,184,753...73,360,113

RRP8

ribosomal RNA processing 8

involved_in

GO_Central
Ensembl
GO_Central
Ensembl

(PMID:21873635)

GO_REF:0000107

NCBI chr 9:3,152,162...3,169,380
Ensembl chr 9:3,150,877...3,162,562

SIRT1

sirtuin 1

involved_in

GO_REF:0000107

NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

involved_in

GO_REF:0000107

NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871

SUV39H1

SUV39H1 histone lysine methyltransferase

involved_in

GO_REF:0000107

NCBI chr X:42,797,309...42,811,457
Ensembl chr X:42,797,828...42,814,003

UBTF

upstream binding transcription factor

acts_upstream_of_or_within

(MGI:3836497|PMID:19103806)

PMID:19103806

MGI:3836497

NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141

regulation of chromatin assembly

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

PARP10

poly(ADP-ribose) polymerase family member 10

involved_in

(PMID:15674325)

PMID:15674325

NCBI chr 4:688,511...695,808

SPT2 chromatin protein domain containing 1

involved_in

(PMID:21873635)

NCBI chr 2:40,581,816...40,604,040

regulation of chromatin organization

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

ALKBH4

alkB homolog 4, lysine demethylase

involved_in