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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin organization
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Accession:GO:0006325 term browser browse the term
Definition:Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
Synonyms:exact_synonym: chromatin organisation;   establishment or maintenance of chromatin architecture
 related_synonym: chromatin assembly or disassembly;   chromatin assembly/disassembly;   chromatin modification
 alt_id: GO:0006333;   GO:0016568



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chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:40,711,139...40,736,763
Ensembl chr 4:46,556,892...46,581,573
JBrowse link
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:1934781|PMID:11318604) MGI PMID:11318604 MGI:1934781 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IEA InterPro GO_REF:0000002 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ASH1L ASH1 like histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:130,679,868...130,906,918
Ensembl chr 1:134,286,761...134,468,722
JBrowse link
G ATAD2 ATPase family AAA domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:120,014,794...120,091,465
Ensembl chr 8:122,770,893...122,846,958
JBrowse link
G ATXN7L3 ataxin 7 like 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:13,197,939...13,206,017
Ensembl chr17:13,362,312...13,369,667
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr2A:27,884,907...28,338,302
Ensembl chr2A:27,974,917...28,420,519
JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321
JBrowse link
G BANF1 BAF nuclear assembly factor 1 involved_in ISO (PMID:28841419) UniProt PMID:28841419 NCBI chr11:61,366,480...61,368,547
Ensembl chr11:64,693,447...64,695,509
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2179578|PMID:11980720) MGI
Ensembl
PMID:11980720 GO_REF:0000107 MGI:2179578 Ensembl chr 7:80,594,626...80,675,709 JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G BRD3 bromodomain containing 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:105,151,354...105,189,754
Ensembl chr 9:133,759,111...133,782,419
JBrowse link
G BRD4 bromodomain containing 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600
JBrowse link
G BRDT bromodomain testis associated involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:94,603,937...94,668,852
Ensembl chr 1:93,348,994...93,413,343
JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:10,424,993...10,476,702
Ensembl chr19:11,144,733...11,195,948
JBrowse link
G CDAN1 codanin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21364188) MGI
Ensembl
PMID:21364188 GO_REF:0000107 NCBI chr15:21,684,234...21,697,840
Ensembl chr15:39,838,604...39,851,562
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:94,165,414...94,238,836
Ensembl chr 5:99,721,032...99,790,263
JBrowse link
G CHD2 chromodomain helicase DNA binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr15:71,568,560...71,713,330
Ensembl chr15:90,781,169...90,903,569
JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1333986|PMID:10204490) MGI
Ensembl
UniProt
PMID:10204490 GO_REF:0000043 GO_REF:0000107 MGI:1333986 NCBI chr17:7,919,803...7,947,787
Ensembl chr17:7,910,644...7,933,115
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:6,701,004...6,738,621
Ensembl chr12:6,619,089...6,656,076
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G CHD6 chromodomain helicase DNA binding protein 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:37,744,012...37,953,593
Ensembl chr20:38,839,685...38,999,501
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:2,202,847...2,274,012
Ensembl chr14:20,281,422...20,326,361
JBrowse link
G CHD9 chromodomain helicase DNA binding protein 9 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:33,310,358...33,582,142
Ensembl chr16:52,550,321...52,665,290
JBrowse link
G DAXX death domain associated protein involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G DEK DEK proto-oncogene involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 6:18,071,928...18,112,245
Ensembl chr 6:18,427,844...18,465,606
JBrowse link
G DNAJC2 DnaJ heat shock protein family (Hsp40) member C2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:95,303,823...95,336,085
Ensembl chr 7:108,048,307...108,080,127
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr19:1,173,915...1,243,633
Ensembl chr19:2,147,031...2,210,039
JBrowse link
G EHMT1 euchromatic histone lysine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:108,724,568...108,951,077
Ensembl chr 9:137,764,950...137,895,564
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478
JBrowse link
G EP400 E1A binding protein p400 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:129,606,823...129,737,179
Ensembl chr12:134,045,829...134,163,185
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G GPX4 glutathione peroxidase 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934492|PMID:11344099) MGI
Ensembl
PMID:11344099 GO_REF:0000107 MGI:1934492 NCBI chr19:20,904...23,828 JBrowse link
G H1-2 H1.2 linker histone, cluster member acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2664444|PMID:12808097) MGI
Ensembl
PMID:12808097 GO_REF:0000107 MGI:2664444 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657
JBrowse link
G H1-3 H1.3 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 6:26,068,439...26,071,115
Ensembl chr 6:26,729,239...26,729,904
JBrowse link
G H1-4 H1.4 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 6:25,992,845...26,006,585
Ensembl chr 6:26,653,920...26,654,300
JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) UniProt PMID:22956909 NCBI chr 6:27,697,071...27,697,949 JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:28,371,430...28,372,110 JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HDAC2 histone deacetylase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G HDAC3 histone deacetylase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:136,981,790...136,997,786
Ensembl chr 5:143,094,406...143,110,322
JBrowse link
G HDAC4 histone deacetylase 4 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HDAC5 histone deacetylase 5 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr17:13,273,052...13,319,695
Ensembl chr17:13,446,836...13,479,140
JBrowse link
G HDAC7 histone deacetylase 7 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr12:40,913,301...40,950,542
Ensembl chr12:41,789,367...41,825,123
JBrowse link
G HDAC8 histone deacetylase 8 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:61,565,790...61,811,588 JBrowse link
G HDAC9 histone deacetylase 9 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 7:18,740,580...19,653,615
Ensembl chr 7:18,138,761...18,970,717
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (MGI:3590574|PMID:12660172) MGI PMID:12660172 MGI:3590574 NCBI chr21:25,695,582...25,702,689 JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 acts_upstream_of_or_within ISO (MGI:5578301|PMID:24392144) MGI PMID:24392144 MGI:5578301 NCBI chr  X:70,180,585...70,268,545 JBrowse link
G ING1 inhibitor of growth family member 1 involved_in IEA UniProt GO_REF:0000043 Ensembl chr13:110,963,405...110,970,691 JBrowse link
G ING2 inhibitor of growth family member 2 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 4:175,683,040...175,689,646
Ensembl chr 4:187,909,495...187,915,674
JBrowse link
G ING3 inhibitor of growth family member 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:112,955,848...112,984,473
Ensembl chr 7:125,643,332...125,671,566
JBrowse link
G ING4 inhibitor of growth family member 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:6,782,402...6,795,035
Ensembl chr12:6,698,843...6,710,955
JBrowse link
G ING5 inhibitor of growth family member 5 involved_in IEA UniProt GO_REF:0000043 NCBI chr2B:128,979,282...129,007,476
Ensembl chr2B:247,755,552...247,793,893
JBrowse link
G JAK2 Janus kinase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:4,820,303...4,971,867
Ensembl chr 9:5,006,271...5,156,626
JBrowse link
G KDM1A lysine demethylase 1A involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G KDM2A lysine demethylase 2A involved_in IEA UniProt GO_REF:0000043 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA UniProt GO_REF:0000043 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246
JBrowse link
G KDM4A lysine demethylase 4A involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:42,949,977...43,005,684
Ensembl chr 1:44,325,624...44,380,163
JBrowse link
G KDM4B lysine demethylase 4B involved_in IEA UniProt GO_REF:0000043 NCBI chr19:3,986,296...4,172,359
Ensembl chr19:4,977,413...5,116,113
JBrowse link
G KDM4C lysine demethylase 4C involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:6,568,569...6,978,741
Ensembl chr 9:6,746,265...7,155,298
JBrowse link
G KDM5A lysine demethylase 5A involved_in IEA UniProt GO_REF:0000043 NCBI chr12:342,555...452,161
Ensembl chr12:319,273...423,634
JBrowse link
G KDM5B lysine demethylase 5B involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:178,323,073...178,406,608
Ensembl chr 1:182,622,425...182,702,994
JBrowse link
G KDM5C lysine demethylase 5C involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:45,377,609...45,440,025
Ensembl chr  X:53,515,886...53,548,785
JBrowse link
G KMT2A lysine methyltransferase 2A involved_in IEA UniProt GO_REF:0000043 NCBI chr11:113,273,198...113,364,404 JBrowse link
G KMT2B lysine methyltransferase 2B involved_in IEA UniProt GO_REF:0000043 NCBI chr19:32,647,815...32,668,656
Ensembl chr19:41,382,458...41,402,695
JBrowse link
G KMT2C lysine methyltransferase 2C involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:143,714,716...144,016,188
Ensembl chr 7:155,862,610...156,081,043
JBrowse link
G KMT2D lysine methyltransferase 2D involved_in IEA UniProt GO_REF:0000043 NCBI chr12:39,689,463...39,731,904
Ensembl chr12:40,575,083...40,608,661
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) UniProt PMID:17540172 NCBI chr20:39,846,011...39,889,267 JBrowse link
G L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:22,102,348...22,128,351
Ensembl chr22:40,193,492...40,218,925
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:127,814,847...127,938,220
Ensembl chr 6:131,922,967...132,045,708
JBrowse link
G LAMC1 laminin subunit gamma 1 involved_in ISO (MGI:5828725|PMID:27234308) MGI PMID:27234308 MGI:5828725 NCBI chr 1:158,541,635...158,663,836
Ensembl chr 1:162,700,704...162,822,534
JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G LOC100977781 protein HIRA involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100978953 histone H2A type 1-A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5569674|PMID:24506885) MGI
Ensembl
PMID:24506885 GO_REF:0000107 MGI:5569674 NCBI chr 6:25,560,820...25,561,293
Ensembl chr 6:25,886,620...25,887,015
JBrowse link
G LOC100979289 histone H2B type 1-A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5569674|PMID:24506885) MGI
Ensembl
PMID:24506885 GO_REF:0000107 MGI:5569674 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G LOC100984360 mortality factor 4-like protein 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 4:165,843,364...165,845,039 JBrowse link
G LOC100986203 histone-lysine N-methyltransferase SETMAR involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791
JBrowse link
G LRWD1 leucine rich repeats and WD repeat domain containing 1 involved_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr 7:94,605,364...94,613,348 JBrowse link
G MBTD1 mbt domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:45,267,275...45,350,751
Ensembl chr17:50,137,395...50,215,078
JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:36,761,402...36,783,746
Ensembl chr 1:38,111,937...38,133,360
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr15:57,844,220...57,869,139
Ensembl chr15:76,772,007...76,829,259
JBrowse link
G MOS MOS proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:52,559,066...52,560,362
Ensembl chr 8:49,930,077...49,931,117
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:4,385,861...4,403,467
Ensembl chr  X:11,672,109...11,693,468
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:138,634,278...139,089,171
Ensembl chr 5:144,741,452...144,865,269
JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:172,431,968...172,602,174
Ensembl chr 5:179,499,865...179,666,351
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:2,009,276...2,119,182
Ensembl chr 4:1,945,307...2,027,425
JBrowse link
G NSD3 nuclear receptor binding SET domain protein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:37,571,831...37,684,297
Ensembl chr 8:34,754,353...34,860,766
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:181,322,760...181,359,321
Ensembl chr 1:185,606,796...185,642,984
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G PBRM1 polybromo 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
G PRMT7 protein arginine methyltransferase 7 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:48,687,324...48,734,883
Ensembl chr16:68,086,620...68,127,953
JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 Ensembl chr19:1,331,312...1,352,260 JBrowse link
G RAG1 recombination activating 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:36,483,697...36,546,242
Ensembl chr11:36,412,420...36,422,904
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575
JBrowse link
G RBL1 RB transcriptional corepressor like 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:33,324,663...33,419,891
Ensembl chr20:34,443,203...34,534,109
JBrowse link
G RBL2 RB transcriptional corepressor like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:33,674,751...33,731,308
Ensembl chr16:52,759,290...52,816,175
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,012,839...61,022,225
Ensembl chr11:64,347,859...64,356,868
JBrowse link
G RING1 ring finger protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417
JBrowse link
G RNF168 ring finger protein 168 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
JBrowse link
G RNF20 ring finger protein 20 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:72,738,132...72,767,868
Ensembl chr 9:100,732,342...100,761,258
JBrowse link
G RNF40 ring finger protein 40 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:24,194,293...24,207,460
Ensembl chr16:31,129,352...31,142,280
JBrowse link
G RNF8 ring finger protein 8 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G SATB1 SATB homeobox 1 acts_upstream_of_or_within ISO (MGI:2658695|PMID:12692553) MGI PMID:12692553 MGI:2658695 NCBI chr 3:18,267,819...18,368,924
Ensembl chr 3:18,602,204...18,681,211
JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr16:23,984,260...24,019,579 JBrowse link
G SETD1B SET domain containing 1B, histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr12:119,406,881...119,436,037
Ensembl chr12:122,777,996...122,804,181
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:131,869,999...131,921,342
Ensembl chr 4:143,167,190...143,227,732
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr 9:1,818,004...1,997,652
Ensembl chr 9:2,013,237...2,189,409
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2179578|PMID:11980720) MGI
Ensembl
PMID:11980720 GO_REF:0000107 MGI:2179578 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase involved_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr10:14,882,491...14,907,724
Ensembl chr10:15,211,360...15,237,097
JBrowse link
G TDRD3 tudor domain containing 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr13:41,568,080...41,750,288
Ensembl chr13:60,290,518...60,470,245
JBrowse link
G UBN1 ubinuclein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:172,205,958...172,321,758
Ensembl chr 5:179,271,577...179,374,229
JBrowse link
G USP16 ubiquitin specific peptidase 16 involved_in IEA UniProt GO_REF:0000043 NCBI chr21:15,455,805...15,487,853
Ensembl chr21:28,843,749...28,876,267
JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA UniProt GO_REF:0000043 NCBI chr10:28,685,294...28,777,176
Ensembl chr10:29,042,331...29,130,591
JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A involved_in ISO (MGI:6161518|PMID:29813070) UniProt PMID:29813070 MGI:6161518 NCBI chr19:3,066,554...3,090,285 JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3789238|PMID:16079796) MGI
Ensembl
PMID:16079796 GO_REF:0000107 MGI:3789238 NCBI chr 1:39,545,264...39,589,721
Ensembl chr 1:40,869,076...40,912,747
JBrowse link
G ZNF462 zinc finger protein 462 acts_upstream_of_or_within ISO (MGI:4440672|PMID:20219459) MGI PMID:20219459 MGI:4440672 NCBI chr 9:78,015,173...78,168,766
Ensembl chr 9:106,267,333...106,357,848
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:63,447,366...63,743,316 JBrowse link
G HJURP Holliday junction recognition protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:121,076,314...121,096,783
Ensembl chr2B:239,950,984...239,967,955
JBrowse link
G ITGB3BP integrin subunit beta 3 binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:62,695,675...62,779,887
Ensembl chr 1:64,506,240...64,588,657
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5438906|PMID:22516971) MGI
Ensembl
PMID:22516971 GO_REF:0000107 MGI:5438906 NCBI chr21:18,635,735...18,646,611
Ensembl chr21:32,016,547...32,027,430
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:21,684,234...21,697,840
Ensembl chr15:39,838,604...39,851,562
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) UniProt PMID:16322561 Ensembl chr 1:843,551...857,535 JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
chromatin looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1314932|PMID:9845365) MGI
Ensembl
PMID:9845365 GO_REF:0000107 MGI:1314932 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983
JBrowse link
G ACTL6B actin like 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,670,166...92,683,571
Ensembl chr 7:106,070,839...106,083,646
JBrowse link
G ACTR5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,073,297...35,097,955
Ensembl chr20:36,181,343...36,204,996
JBrowse link
G ACTR6 actin related protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:97,781,017...97,806,049
Ensembl chr12:101,189,377...101,212,526
JBrowse link
G ACTR8 actin related protein 8 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 3:53,802,916...53,820,244
Ensembl chr 3:55,027,468...55,041,182
JBrowse link
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3789431|PMID:18448678) MGI
InterPro
Ensembl
PMID:18448678 GO_REF:0000002 GO_REF:0000107 MGI:3789431 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
G ARID1B AT-rich interaction domain 1B involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:154,581,148...155,018,706 JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl
GOC
GO_REF:0000107 GO_REF:0000108 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2179578|PMID:11980720) MGI
Ensembl
InterPro
PMID:11980720 GO_REF:0000002 GO_REF:0000107 MGI:2179578 Ensembl chr 7:80,594,626...80,675,709 JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:2149896|PMID:11532953) MGI PMID:11532953 MGI:2149896 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428
JBrowse link
G BRD4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600
JBrowse link
G BRDT bromodomain testis associated involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2668282|PMID:12861021) RGD
Ensembl
MGI
PMID:12861021 PMID:22215678 GO_REF:0000107 MGI:2668282 RGD:9586361 NCBI chr 1:94,603,937...94,668,852
Ensembl chr 1:93,348,994...93,413,343
JBrowse link
G BTAF1 B-TFIID TATA-box binding protein associated factor 1 involved_in IEA GOC GO_REF:0000108 NCBI chr10:88,671,438...88,778,452
Ensembl chr10:92,193,094...92,298,865
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3616364|PMID:16415155) MGI
GOC
Ensembl
PMID:16415155 GO_REF:0000107 GO_REF:0000108 MGI:3616364 NCBI chr 5:94,165,414...94,238,836
Ensembl chr 5:99,721,032...99,790,263
JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:122,595,246...122,720,788
Ensembl chr 1:112,809,274...112,862,219
JBrowse link
G CHD2 chromodomain helicase DNA binding protein 2 involved_in IEA GOC GO_REF:0000108 NCBI chr15:71,568,560...71,713,330
Ensembl chr15:90,781,169...90,903,569
JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr17:7,919,803...7,947,787
Ensembl chr17:7,910,644...7,933,115
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr12:6,701,004...6,738,621
Ensembl chr12:6,619,089...6,656,076
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G CHD6 chromodomain helicase DNA binding protein 6 involved_in IEA GOC GO_REF:0000108 NCBI chr20:37,744,012...37,953,593
Ensembl chr20:38,839,685...38,999,501
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694290|PMID:26102480) Ensembl
MGI
GOC
PMID:26102480 GO_REF:0000107 GO_REF:0000108 MGI:5694290 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr14:2,202,847...2,274,012
Ensembl chr14:20,281,422...20,326,361
JBrowse link
G CHD9 chromodomain helicase DNA binding protein 9 involved_in IEA GOC GO_REF:0000108 NCBI chr16:33,310,358...33,582,142
Ensembl chr16:52,550,321...52,665,290
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,180,420...137,185,657
Ensembl chr 8:140,267,024...140,270,757
JBrowse link
G DAXX death domain associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:43,516,839...43,524,206
Ensembl chr 1:44,886,307...44,893,598
JBrowse link
G EOMES eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
JBrowse link
G EP400 E1A binding protein p400 involved_in IEA GOC GO_REF:0000108 NCBI chr12:129,606,823...129,737,179
Ensembl chr12:134,045,829...134,163,185
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA GOC GO_REF:0000108 NCBI chr10:44,703,720...44,784,948 JBrowse link
G ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA GOC GO_REF:0000108 NCBI chr  X:61,441,350...61,476,267
Ensembl chr  X:71,526,160...71,560,091
JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:66,967,399...67,153,934
Ensembl chr 9:95,092,512...95,183,122
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G FOXA1 forkhead box A1 involved_in ISO (MGI:4456944|PMID:15748903) UniProt PMID:15748903 MGI:4456944 NCBI chr14:18,347,284...18,352,705 JBrowse link
G FSBP fibrinogen silencer binding protein involved_in IEA GOC GO_REF:0000108 NCBI chr 8:91,050,692...91,059,978
Ensembl chr 8:92,939,535...93,034,060
JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) MGI PMID:15087456 MGI:3046385 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272
JBrowse link
G GATAD1 GATA zinc finger domain containing 1 involved_in ISO (PMID:20850016) GO_Central PMID:20850016 NCBI chr 7:84,445,039...84,456,781 JBrowse link
G GATAD2A GATA zinc finger domain containing 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,824,615...18,947,351
Ensembl chr19:19,873,119...19,942,670
JBrowse link
G GATAD2B GATA zinc finger domain containing 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,161,151...129,279,702
Ensembl chr 1:132,794,458...132,813,108
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HDAC2 histone deacetylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G HDAC4 histone deacetylase 4 involved_in ISO (PMID:18850004) BHF-UCL PMID:18850004 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HELLS helicase, lymphoid specific involved_in IEA GOC GO_REF:0000108 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G HLTF helicase like transcription factor involved_in IEA GOC GO_REF:0000108 NCBI chr 3:146,054,371...146,111,150
Ensembl chr 3:153,632,319...153,688,951
JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3699537|PMID:11733582) MGI
Ensembl
PMID:11733582 GO_REF:0000107 MGI:3699537 NCBI chr12:118,562,308...118,584,596
Ensembl chr12:121,932,671...121,955,911
JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311
JBrowse link
G INO80B INO80 complex subunit B involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr2A:74,521,624...74,524,578 JBrowse link
G INO80C INO80 complex subunit C involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr18:28,686,112...28,715,946
Ensembl chr18:32,260,924...32,304,152
JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:93,233,672...93,325,871
Ensembl chr2B:211,373,993...211,433,124
JBrowse link
G INO80E INO80 complex subunit E involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 Ensembl chr16:30,369,610...30,379,198 JBrowse link
G KAT2B lysine acetyltransferase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:19,956,067...20,070,637
Ensembl chr 3:20,286,865...20,400,770
JBrowse link
G KDM6A lysine demethylase 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029
JBrowse link
G KDM6B lysine demethylase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,878,783...7,889,372
Ensembl chr17:7,866,973...7,874,937
JBrowse link
G KLF1 Kruppel like factor 1 acts_upstream_of_or_within ISO (MGI:3056025|PMID:15489291) MGI PMID:15489291 MGI:3056025 NCBI chr19:12,446,130...12,449,238
Ensembl chr19:13,188,652...13,191,425
JBrowse link
G LOC100991444 cat eye syndrome critical region protein 2 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr22:795,525...987,645
Ensembl chr22:16,335,754...16,412,640
JBrowse link
G LOC100995302 RAD54 like 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:51,466,650...51,637,062
Ensembl chr 3:52,754,861...52,828,441
Ensembl chr 3:52,754,861...52,828,441
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:9790534) ComplexPortal PMID:9790534 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD3 methyl-CpG binding domain protein 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr19:1,549,184...1,559,254 JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:39,183,112...39,192,925
Ensembl chr12:40,073,860...40,083,655
JBrowse link
G MEN1 menin 1 acts_upstream_of_or_within ISO (MGI:3616364|PMID:16415155)
(MGI:3616131|PMID:15044367)
MGI PMID:15044367 PMID:16415155 MGI:3616131 MGI:3616364 NCBI chr11:60,159,009...60,166,222
Ensembl chr11:63,499,962...63,507,164
JBrowse link
G MIER1 MIER1 transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,174,143...66,237,114
Ensembl chr 1:68,059,694...68,122,354
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:9790534) ComplexPortal PMID:9790534 NCBI chr14:86,058,412...86,111,736 JBrowse link
G MTA2 metastasis associated 1 family member 2 involved_in ISO (PMID:9790534) ComplexPortal PMID:9790534 NCBI chr11:57,950,770...57,959,615
Ensembl chr11:61,305,373...61,324,592
JBrowse link
G MTA3 metastasis associated 1 family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:42,593,721...42,847,045
Ensembl chr2A:43,513,514...43,694,314
JBrowse link
G MYB MYB proto-oncogene, transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,952,728...132,990,560
Ensembl chr 6:137,048,812...137,086,194
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:124,387,561...124,393,551
Ensembl chr 8:127,131,512...127,136,863
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:57,916,267...57,961,812
Ensembl chr 1:59,626,793...59,666,809
JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:124,676,456...124,708,349
Ensembl chr11:128,572,240...128,601,779
JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662932|PMID:12714744) MGI
Ensembl
PMID:12714744 GO_REF:0000107 MGI:2662932 NCBI chr 8:21,268,873...21,281,684
Ensembl chr 8:18,208,934...18,221,577
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 5:138,634,278...139,089,171
Ensembl chr 5:144,741,452...144,865,269
JBrowse link
G NUDT5 nudix hydrolase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:12,177,922...12,206,435
Ensembl chr10:12,158,106...12,176,533
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5688228|PMID:26134869) MGI
Ensembl
PMID:26134869 GO_REF:0000107 MGI:5688228 NCBI chr20:41,240,430...41,270,036
Ensembl chr20:42,333,593...42,375,850
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G PAK1 p21 (RAC1) activated kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,372,577...72,524,817
Ensembl chr11:76,015,998...76,104,197
JBrowse link
G PAX6 paired box 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:5440096|PMID:23070814) MGI PMID:23070814 MGI:5440096 NCBI chr 1:17,589,513...17,707,442
Ensembl chr 1:18,639,641...18,756,952
JBrowse link
G PBRM1 polybromo 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146
JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,459,855...46,465,882
Ensembl chr19:55,381,803...55,387,664
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951
JBrowse link
G RAD54B RAD54 homolog B involved_in IEA GOC GO_REF:0000108 NCBI chr 8:90,995,229...91,098,149
Ensembl chr 8:92,939,535...93,034,060
JBrowse link
G RAD54L RAD54 like involved_in IEA GOC GO_REF:0000108 NCBI chr 1:45,549,586...45,581,711
Ensembl chr 1:46,905,598...46,936,259
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14609955), (PMID:9790534) ComplexPortal PMID:9790534 PMID:14609955 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:9,465,579...9,491,096
Ensembl chr  X:16,834,811...16,859,575
JBrowse link
G RERE arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2683041|PMID:14645126) MGI
Ensembl
PMID:14645126 GO_REF:0000107 MGI:2683041 NCBI chr 1:7,111,594...7,576,667
Ensembl chr 1:8,351,367...8,648,973
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:125,120,524...125,200,859
Ensembl chr 3:132,486,229...132,528,918
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407
JBrowse link
G SATB1 SATB homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5295905|PMID:21930775) MGI
InterPro
PMID:21930775 GO_REF:0000002 MGI:5295905 NCBI chr 3:18,267,819...18,368,924
Ensembl chr 3:18,602,204...18,681,211
JBrowse link
G SATB2 SATB homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793380|PMID:18255031) MGI
Ensembl
InterPro
PMID:18255031 GO_REF:0000002 GO_REF:0000107 MGI:3793380 NCBI chr2B:86,518,043...86,720,212
Ensembl chr2B:204,406,887...204,599,539
JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3703453|PMID:17215307) MGI
Ensembl
PMID:17215307 GO_REF:0000107 MGI:3703453 NCBI chr 1:40,323,101...40,540,236
Ensembl chr 1:41,639,127...41,776,261
JBrowse link
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:118,577,295...118,654,326
Ensembl chr  X:128,875,334...128,952,900
JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 NOT|involved_in ISO
IEA
(PMID:22368283) UniProt
UniProt
InterPro
PMID:22368283 GO_REF:0000002 GO_REF:0000117 NCBI chr 9:1,818,004...1,997,652
Ensembl chr 9:2,013,237...2,189,409
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3610843|PMID:16287714) RGD
UniProt
InterPro
Ensembl
MGI
PMID:9001244 PMID:16287714 GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 MGI:3610843 RGD:634124 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2179578|PMID:11980720)
(MGI:2149896|PMID:11532953)
MGI
InterPro
GOC
Ensembl
PMID:11532953 PMID:11980720 GO_REF:0000002 GO_REF:0000107 GO_REF:0000108 MGI:2149896 MGI:2179578 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:86,567,722...86,651,527
Ensembl chr 4:97,240,614...97,324,366
JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 involved_in IEA GOC GO_REF:0000108 NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921
JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248
JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 involved_in ISO (PMID:10078207), (PMID:11018012), (PMID:11726552) UniProt PMID:10078207 PMID:11018012 PMID:11726552 NCBI chr12:32,726,150...32,753,366
Ensembl chr12:32,977,879...33,004,144
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804
JBrowse link
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr17:57,911,612...57,922,461
Ensembl chr17:63,055,968...63,068,861
JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681
JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr17:16,633,982...16,660,502
Ensembl chr17:16,860,400...16,884,946
JBrowse link
G SMYD1 SET and MYND domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2178868|PMID:11923873) MGI
Ensembl
PMID:11923873 GO_REF:0000107 MGI:2178868 NCBI chr2A:87,201,207...87,246,416
Ensembl chr2A:89,108,642...89,155,797
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SRCAP Snf2 related CREBBP activator protein involved_in IEA GOC GO_REF:0000108 NCBI chr16:24,229,869...24,271,427 JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:14,882,491...14,907,724
Ensembl chr10:15,211,360...15,237,097
JBrowse link
G TBR1 T-box brain transcription factor 1 involved_in ISO (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr2B:48,709,687...48,719,382 JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:51,039,142...51,048,346
Ensembl chr19:59,879,141...59,891,335
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G TOP1 DNA topoisomerase I involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5295905|PMID:21930775) MGI
Ensembl
PMID:21930775 GO_REF:0000107 MGI:5295905 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104
JBrowse link
G TTF1 transcription termination factor 1 acts_upstream_of_or_within ISO (MGI:85982|PMID:9049305) MGI PMID:9049305 MGI:85982 NCBI chr 9:103,495,737...103,525,775
Ensembl chr 9:132,129,318...132,158,660
JBrowse link
G TTF2 transcription termination factor 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:85,417,804...85,459,440
Ensembl chr 1:120,413,049...120,454,630
JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880
JBrowse link
G VPS72 vacuolar protein sorting 72 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:126,525,642...126,539,432
Ensembl chr 1:130,174,051...130,187,785
JBrowse link
G YY1 YY1 transcription factor involved_in ISO (PMID:21303910) ComplexPortal PMID:21303910 NCBI chr14:80,859,491...80,903,651 JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,085,146...45,114,965
Ensembl chr14:63,354,458...63,359,403
JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A involved_in ISO (PMID:26816381) UniProt PMID:26816381 NCBI chr19:3,066,554...3,090,285 JBrowse link
G ZNF827 zinc finger protein 827 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:138,098,155...138,279,102
Ensembl chr 4:149,756,907...149,937,654
JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:93,359,038...93,365,521
Ensembl chr 7:106,599,579...106,606,157
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in IEA GOC GO_REF:0000108 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
MGI
Ensembl
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HELLS helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr19:32,647,815...32,668,656
Ensembl chr19:41,382,458...41,402,695
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3611125|PMID:16322236) MGI
Ensembl
PMID:16322236 GO_REF:0000107 MGI:3611125 Ensembl chr19:1,549,184...1,559,254 JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100976584 uncharacterized LOC100976584 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,754,453...14,776,508
Ensembl chr12:15,173,609...15,173,920
JBrowse link
G LOC100981824 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100985978 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,523,132...26,523,542
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100991861 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100992212 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC103783476 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,656,871...27,657,827 JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694318|PMID:16728391) UniProt
Ensembl
PMID:16728391 GO_REF:0000107 MGI:3694318 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr22:4,816,411...4,984,760
Ensembl chr22:22,927,572...23,070,165
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100970414 histone H3.3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100976584 uncharacterized LOC100976584 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,754,453...14,776,508
Ensembl chr12:15,173,609...15,173,920
JBrowse link
G LOC100977781 protein HIRA involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100981824 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100988671 histone H3.3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100992212 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC103783476 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,656,871...27,657,827 JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G UBN1 ubinuclein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986
JBrowse link
dosage compensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974647 core histone macro-H2A.2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11331621) MGI
Ensembl
PMID:11331621 GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15053874) MGI
Ensembl
PMID:15053874 GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2389513|PMID:12419249) MGI
Ensembl
PMID:12419249 GO_REF:0000107 MGI:2389513 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G EIF1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (MGI:3694307|PMID:16789828) MGI PMID:16789828 MGI:3694307 NCBI chr17:15,622,030...15,624,812
Ensembl chr17:15,843,190...15,846,044
JBrowse link
G EXOSC10 exosome component 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3694307|PMID:16789828) MGI
Ensembl
PMID:16789828 GO_REF:0000107 MGI:3694307 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
G JARID2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5888829|PMID:27892467) MGI
Ensembl
PMID:27892467 GO_REF:0000107 MGI:5888829 NCBI chr 6:15,100,415...15,376,505
Ensembl chr 6:15,466,050...15,739,170
JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,523,567...113,611,043
Ensembl chr 1:126,736,039...126,752,907
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:2,315,868...2,329,460
Ensembl chr14:20,392,665...20,405,906
JBrowse link
G RBM15 RNA binding motif protein 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,987,871...112,996,054
Ensembl chr 1:127,320,147...127,354,537
JBrowse link
G RBM15B RNA binding motif protein 15B involved_in ISO (PMID:27602518) UniProt PMID:27602518 NCBI chr 3:51,321,963...51,325,092 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746) MGI
Ensembl
PMID:18425126 PMID:23754746 GO_REF:0000107 MGI:3821390 MGI:5532809 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5888829|PMID:27892467) MGI PMID:27892467 MGI:5888829 NCBI chr17:24,790,921...24,853,790 JBrowse link
G YTHDC1 YTH domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:55,701,639...55,738,377
Ensembl chr 4:62,095,948...62,132,609
JBrowse link
epigenetic maintenance of chromatin in transcription-competent conformation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,446,352...120,478,207
Ensembl chr11:124,359,218...124,390,981
JBrowse link
G EP300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G FAM47E family with sequence similarity 47 member E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:47,916,493...47,949,816 JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 involved_in ISO PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr 5:138,634,278...139,089,171
Ensembl chr 5:144,741,452...144,865,269
JBrowse link
G PABPC1L poly(A) binding protein cytoplasmic 1 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5688228|PMID:26134869) MGI
Ensembl
PMID:26134869 GO_REF:0000107 MGI:5688228 NCBI chr20:41,240,430...41,270,036
Ensembl chr20:42,333,593...42,375,850
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,011,708...16,064,344
Ensembl chr 1:17,067,729...17,120,513
JBrowse link
G PHF2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804
JBrowse link
G SPHK2 sphingosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,620,980...45,631,786
Ensembl chr19:54,213,166...54,224,767
JBrowse link
G VPS72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,525,642...126,539,432
Ensembl chr 1:130,174,051...130,187,785
JBrowse link
G WBP2 WW domain binding protein 2 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr17:69,796,205...69,806,290
Ensembl chr17:75,346,204...75,356,463
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 Ensembl chr16:278,239...337,891 JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr11:2,908,537...2,911,134 JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G DNMT3L DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3663953|PMID:16920095) MGI
Ensembl
PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chr21:30,503,194...30,520,237 JBrowse link
G LOC100978090 protein ALEX involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,204,188...55,206,608
Ensembl chr20:56,474,459...56,621,747
JBrowse link
G LOC100990650 guanine nucleotide-binding protein G(s) subunit alpha acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr20:55,190,607...55,262,245 JBrowse link
G NDN necdin, MAGE family member acts_upstream_of_or_within ISO (MGI:1345919|PMID:10508517) MGI PMID:10508517 MGI:1345919 NCBI chr15:5,977,519...5,979,185 JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr2B:93,516,875...93,556,652
Ensembl chr2B:211,645,765...211,685,047
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,376,233...19,404,699
Ensembl chr15:37,630,476...37,657,918
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G CBX3 chromobox 3 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr 7:26,847,247...26,859,339
Ensembl chr 7:26,450,411...26,462,350
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,354,806...1,393,244
Ensembl chr 4:1,238,984...1,266,822
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr19:1,173,915...1,243,633
Ensembl chr19:2,147,031...2,210,039
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G HELLS helicase, lymphoid specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510059|PMID:15448183) MGI
Ensembl
PMID:15448183 GO_REF:0000107 MGI:3510059 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:16901784) UniProt PMID:16901784 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HMGB1 high mobility group box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr12:39,689,463...39,731,904
Ensembl chr12:40,575,083...40,608,661
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr20:39,846,011...39,889,267 JBrowse link
G LOC100970460 histone H1.0 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:18,720,235...18,722,440
Ensembl chr22:36,551,693...36,552,277
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3530434|PMID:15608638) MGI PMID:15608638 MGI:3530434 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,698,338...54,761,889
Ensembl chr17:59,824,566...59,887,015
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224
JBrowse link
heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC2 histone deacetylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:19,691,173...19,736,062
Ensembl chr 1:20,736,259...20,780,690
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,547,303...22,653,676
Ensembl chr 8:19,483,335...19,589,522
JBrowse link
G MECOM MDS1 and EVI1 complex locus involved_in ISO (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr 3:166,099,530...166,677,739
Ensembl chr 3:174,154,814...174,731,252
JBrowse link
G MTHFR methylenetetrahydrofolate reductase acts_upstream_of
involved_in
ISO
IEA
(PMID:24769206) BHF-UCL
Ensembl
PMID:24769206 GO_REF:0000107 NCBI chr 1:10,548,196...10,568,174
Ensembl chr 1:11,766,334...11,785,419
JBrowse link
G PRDM16 PR/SET domain 16 involved_in ISO (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr 1:1,730,122...2,100,636
Ensembl chr 1:2,981,667...3,234,251
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5471848|PMID:23509280)
(PMID:23509280)
MGI
Ensembl
PMID:23509280 GO_REF:0000107 MGI:5471848 NCBI chr 4:131,869,999...131,921,342
Ensembl chr 4:143,167,190...143,227,732
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:46,321,075...46,328,865
Ensembl chr20:47,384,818...47,390,733
JBrowse link
histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32E acidic nuclear phosphoprotein 32 family member E involved_in ISO (PMID:24463511) UniProt PMID:24463511 NCBI chr 1:125,563,953...125,581,396
Ensembl chr 1:129,220,730...129,233,218
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (MGI:3693383|PMID:12509435) UniProt PMID:12509435 MGI:3693383 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G PTMA prothymosin alpha acts_upstream_of_or_within ISO (MGI:4457993|PMID:20434447) MGI PMID:20434447 MGI:4457993 NCBI chr2B:118,959,382...118,964,364 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
G VPS72 vacuolar protein sorting 72 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:126,525,642...126,539,432
Ensembl chr 1:130,174,051...130,187,785
JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:93,359,038...93,365,521
Ensembl chr 7:106,599,579...106,606,157
JBrowse link
inactivation of paternal X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5548017|PMID:24268575) MGI PMID:24268575 MGI:5548017 NCBI chr 8:66,578,674...66,599,360
Ensembl chr 8:68,240,741...68,260,263
JBrowse link
inactivation of X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCGF3 polycomb group ring finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:802,990...874,063
Ensembl chr 4:746,137...805,443
JBrowse link
G PCGF5 polycomb group ring finger 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:87,908,298...88,029,923
Ensembl chr10:91,492,201...91,549,737
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
negative regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,477,755...22,487,894 JBrowse link
G CREBZF CREB/ATF bZIP transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:80,713,916...80,721,085
Ensembl chr11:84,322,496...84,329,636
JBrowse link
G DNMT3B DNA methyltransferase 3 beta involved_in ISO (MGI:3765099|PMID:18056424) UniProt PMID:18056424 MGI:3765099 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G EPC1 enhancer of polycomb homolog 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chr10:32,398,557...32,509,146
Ensembl chr10:32,985,456...33,095,070
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G LHX2 LIM homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796
JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:26022416), (PMID:28581500) UniProt PMID:26022416 PMID:28581500 NCBI chr12:46,271,425...46,392,128
Ensembl chr12:47,125,110...47,256,615
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,698,338...54,761,889
Ensembl chr17:59,824,566...59,887,015
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
G SMYD5 SMYD family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:73,267,007...73,280,006
Ensembl chr2A:74,755,794...74,768,776
JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,301,245...47,326,891
Ensembl chr11:47,853,991...47,880,259
JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM27 tripartite motif containing 27 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10976108) MGI
Ensembl
PMID:10976108 GO_REF:0000107 NCBI chr 6:28,722,505...28,743,484
Ensembl chr 6:29,390,423...29,411,308
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
nucleolar chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) UniProt PMID:26089203 NCBI chr12:55,176,165...55,207,123 JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:69,075,972...69,108,178
Ensembl chr 9:97,207,823...97,228,542
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11897662) MGI
Ensembl
PMID:11897662 GO_REF:0000107 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2675150|PMID:12842904) MGI
Ensembl
PMID:12842904 GO_REF:0000107 MGI:2675150 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473
JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,180,420...137,185,657
Ensembl chr 8:140,267,024...140,270,757
JBrowse link
G DAXX death domain associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:69,790,478...69,796,518
Ensembl chr10:72,248,454...72,255,339
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:25990725)
(PMID:27552915)
UniProt PMID:25990725 PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G H1-1 H1.1 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,850,443...25,851,223
Ensembl chr 6:26,508,481...26,509,128
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:26,068,439...26,071,115
Ensembl chr 6:26,729,239...26,729,904
JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,992,845...26,006,585
Ensembl chr 6:26,653,920...26,654,300
JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 Ensembl chr 6:28,371,430...28,372,110 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:25,941,055...25,943,565
Ensembl chr 6:26,600,454...26,601,083
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:19,691,173...19,736,062
Ensembl chr 1:20,736,259...20,780,690
JBrowse link
G KAT6A lysine acetyltransferase 6A involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:41,173,833...41,296,547
Ensembl chr 8:38,625,156...38,741,538
JBrowse link
G KAT6B lysine acetyltransferase 6B involved_in IEA InterPro GO_REF:0000002 NCBI chr10:71,354,585...71,561,572
Ensembl chr10:74,035,496...74,223,975
JBrowse link
G LOC100970414 histone H3.3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100970460 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:18,720,235...18,722,440
Ensembl chr22:36,551,693...36,552,277
JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974795 histone H3.1t involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:203,826,506...203,827,872
Ensembl chr 1:209,038,009...209,038,419
JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G LOC100976584 uncharacterized LOC100976584 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,754,453...14,776,508
Ensembl chr12:15,173,609...15,173,920
JBrowse link
G LOC100979289 histone H2B type 1-A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3702345|PMID:17261847) MGI
Ensembl
PMID:17261847 GO_REF:0000107 MGI:3702345 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G LOC100981824 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100985978 histone H3.1 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,523,132...26,523,542
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100988671 histone H3.3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100991861 histone H3.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100992212 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC100992822 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,364,612...144,365,333 JBrowse link
G LOC100993446 histone H1.8 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243
JBrowse link
G LOC103783476 histone H4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,656,871...27,657,827 JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G LOC117977735 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,849,954...144,850,606 JBrowse link
G LOC117980349 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 1:125,196,255...125,197,305 JBrowse link
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2156014|PMID:10531422) MGI
Ensembl
PMID:10531422 GO_REF:0000107 MGI:2156014 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:2,366,988...2,409,598
Ensembl chr16:3,543,418...3,586,299
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:73,549,887...73,589,621
Ensembl chr12:76,402,906...76,441,815
JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:82,895,237...82,897,938
Ensembl chr  X:93,057,803...93,059,323
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr11:2,970,001...3,018,239
Ensembl chr11:2,997,726...3,044,848
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091
JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:99,806,876...99,819,825
Ensembl chr 9:128,473,806...128,484,563
JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:143,628,076...143,751,370
Ensembl chr 6:148,388,329...148,457,023
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SMYD3 SET and MYND domain containing 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5500979|PMID:23752591) MGI
Ensembl
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
G TSPYL1 TSPY like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:114,079,317...114,082,540
Ensembl chr 6:118,226,765...118,228,081
JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:45,293,843...45,300,307
Ensembl chr  X:53,400,290...53,409,275
JBrowse link
G TSPYL4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:114,052,540...114,056,709
Ensembl chr 6:118,201,097...118,202,341
JBrowse link
G TSPYL6 TSPY like 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr2A:54,405,397...54,408,979
Ensembl chr2A:55,553,142...55,554,362
JBrowse link
nucleosome disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:42,823,236...43,004,465
Ensembl chr12:43,692,914...43,871,564
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:27552915) UniProt PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G LOC100975117 histone H2A type 3 involved_in ISO (PMID:22334663) UniProt PMID:22334663 NCBI chr 1:203,858,974...203,860,255
Ensembl chr 1:209,070,117...209,070,509
JBrowse link
G LOC100979289 histone H2B type 1-A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA
RGD
Ensembl
PMID:9001244 GO_REF:0000107 RGD:634124 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921
JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248
JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 involved_in ISO (PMID:8895581) BHF-UCL PMID:8895581 NCBI chr12:32,726,150...32,753,366
Ensembl chr12:32,977,879...33,004,144
JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804
JBrowse link
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:57,911,612...57,922,461
Ensembl chr17:63,055,968...63,068,861
JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681
JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:16,633,982...16,660,502
Ensembl chr17:16,860,400...16,884,946
JBrowse link
G SSRP1 structure specific recognition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,567,420...52,577,324
Ensembl chr 3:160,057,285...160,068,177
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:2,169,169...2,201,911
Ensembl chr14:20,247,325...20,280,074
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIN54 lin-54 DREAM MuvB core complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27465258) ARUK-UCL
Ensembl
PMID:27465258 GO_REF:0000107 NCBI chr 4:41,192,653...41,278,730
Ensembl chr 4:47,046,277...47,131,091
JBrowse link
G MCM3AP minichromosome maintenance complex component 3 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:32,577,539...32,629,060
Ensembl chr21:45,828,554...45,878,100
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G HELLS helicase, lymphoid specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G LOC100970414 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
pericentric heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDHD1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) MGI PMID:21266480 MGI:5317038 NCBI chr14:35,528,981...35,614,145
Ensembl chr14:53,807,684...53,889,703
JBrowse link
positive regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in ISO (PMID:20855495) BHF-UCL PMID:20855495 NCBI chr 1:46,524,484...46,540,595
Ensembl chr 1:48,042,594...48,048,622
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,373,084...14,504,286
Ensembl chr12:14,789,794...14,900,411
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G PPHLN1 periphilin 1 involved_in ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr12:46,271,425...46,392,128
Ensembl chr12:47,125,110...47,256,615
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:6271895 NCBI chr12:54,238,276...54,272,288
Ensembl chr12:56,829,272...56,863,359
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:24623306), (PMID:27732843)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
UniProt PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZNF304 zinc finger protein 304 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:54,365,820...54,374,436
Ensembl chr19:63,198,736...63,204,914
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,940,225...32,946,236
Ensembl chr12:33,189,934...33,195,945
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:54,285,587...54,371,376
Ensembl chr15:73,881,500...73,966,506
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
positive regulation of histone exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667
JBrowse link
programmed DNA elimination by chromosome breakage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:19549901) UniProt PMID:19549901 NCBI chr12:22,954,946...23,096,623 JBrowse link
random inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDYL chromodomain Y like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,607,088...4,790,742
Ensembl chr 6:4,737,306...4,976,777
JBrowse link
G RLIM ring finger protein, LIM domain interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:63,834,345...63,865,874
Ensembl chr  X:73,959,365...73,982,412
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:3653583|PMID:16678107)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:4462332|PMID:20168299)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G BEND3 BEN domain containing 3 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 6:104,875,201...104,926,926
Ensembl chr 6:108,745,993...108,778,116
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,630,695...6,735,711
Ensembl chr11:6,415,003...6,418,414
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:140,743,061...140,744,014
Ensembl chr 8:143,735,819...143,744,138
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH4 alkB homolog 4, lysine demethylase involved_in ISO (MGI:6323482|PMID:30982744) UniProt PMID:30982744 MGI:6323482 NCBI chr 7:94,596,641...94,605,369 JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
G LSM11 LSM11, U7 small nuclear RNA associated involved_in ISO (PMID:33230297) UniProt PMID:33230297 NCBI chr 5:153,129,385...153,182,170 JBrowse link
G METTL4 methyltransferase 4, N6-adenosine involved_in ISO (MGI:6323482|PMID:30982744) UniProt PMID:30982744 MGI:6323482 NCBI chr18:11,711,502...11,745,222
Ensembl chr18:14,018,279...14,051,974
JBrowse link
G MKI67 marker of proliferation Ki-67 involved_in ISO (MGI:5796066|PMID:26949251) UniProt PMID:26949251 MGI:5796066 NCBI chr10:124,684,336...124,714,143
Ensembl chr10:128,936,037...128,962,555
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,140,160...20,417,327
Ensembl chr 9:20,800,393...21,073,046
JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,984,260...24,019,579 JBrowse link
G SETD5 SET domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:9,350,026...9,430,760
Ensembl chr 3:9,592,517...9,672,306
JBrowse link
G SSRP1 structure specific recognition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,567,420...52,577,324
Ensembl chr 3:160,057,285...160,068,177
JBrowse link
G TLK1 tousled like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:58,277,362...58,445,321
Ensembl chr2B:175,735,054...175,903,322
JBrowse link
G TLK2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:56,542,670...56,678,294
Ensembl chr17:61,689,998...61,830,394
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:127,814,847...127,938,220
Ensembl chr 6:131,922,967...132,045,708
JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr19:13,653,166...13,656,397 JBrowse link
regulation of dosage compensation by inactivation of X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HCFC1 host cell factor C1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:143,502,159...143,526,418
Ensembl chr  X:153,389,859...153,412,999
JBrowse link
G KANSL1 KAT8 regulatory NSL complex subunit 1 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr17:11,508,245...11,705,023
Ensembl chr17:11,296,318...11,456,593
JBrowse link
G KANSL2 KAT8 regulatory NSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,063,603...40,092,393
Ensembl chr12:40,941,614...40,970,079
JBrowse link
G KANSL3 KAT8 regulatory NSL complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:102,675,259...102,720,426
Ensembl chr2A:97,522,746...97,561,016
JBrowse link
G KAT8 lysine acetyltransferase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,837,540...23,851,376
Ensembl chr16:31,486,098...31,500,185
JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:39,183,112...39,192,925
Ensembl chr12:40,073,860...40,083,655
JBrowse link
G MSL1 MSL complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,152,296...17,167,127
Ensembl chr17:17,373,780...17,387,351
JBrowse link
G MSL2 MSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:133,203,579...133,252,294
Ensembl chr 3:140,667,652...140,714,294
JBrowse link
G MSL3 MSL complex subunit 3 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr  X:4,385,861...4,403,467
Ensembl chr  X:11,672,109...11,693,468
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921
JBrowse link
G PHF20 PHD finger protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:32,099,066...32,283,298
Ensembl chr20:33,253,482...33,401,629
JBrowse link
G RLIM ring finger protein, LIM domain interacting acts_upstream_of_or_within ISO (MGI:5581575|PMID:24613346) MGI PMID:24613346 MGI:5581575 NCBI chr  X:63,834,345...63,865,874
Ensembl chr  X:73,959,365...73,982,412
JBrowse link
G WDR5 WD repeat domain 5 involved_in ISO (MGI:6207704|PMID:24842875) ComplexPortal PMID:24842875 MGI:6207704 NCBI chr 9:105,241,415...105,265,925
Ensembl chr 9:133,848,185...133,872,889
JBrowse link
regulation of gene expression by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID4A AT-rich interaction domain 4A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3686546|PMID:17043311) MGI
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chr14:38,890,688...38,965,928
Ensembl chr14:57,159,399...57,233,825
JBrowse link
G ARID4B AT-rich interaction domain 4B acts_upstream_of_or_within ISO (MGI:3686546|PMID:17043311) MGI PMID:17043311 MGI:3686546 NCBI chr 1:210,711,946...210,874,034
Ensembl chr 1:215,729,783...215,888,412
JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G CTCF CCCTC-binding factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450195|PMID:12461525), (MGI:3045676|PMID:15143173)
(MGI:3044090|PMID:14716017)
MGI
Ensembl
PMID:12461525 PMID:14716017 PMID:15143173 GO_REF:0000107 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G CTCFL CCCTC-binding factor like involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:53,836,295...53,865,974
Ensembl chr20:55,114,405...55,143,717
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2178074|PMID:11934864)
(MGI:3045942|PMID:15215868)
MGI
Ensembl
PMID:11934864 PMID:15215868 GO_REF:0000107 MGI:2178074 MGI:3045942 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:2178074|PMID:11934864) MGI PMID:11934864 MGI:2178074 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G EED embryonic ectoderm development acts_upstream_of_or_within ISO (MGI:2655036|PMID:12627233) MGI PMID:12627233 MGI:2655036 NCBI chr11:81,295,068...81,330,321
Ensembl chr11:84,902,330...84,937,906
JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 3:116,943,205...117,215,001
Ensembl chr 3:123,861,379...124,126,771
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3054495|PMID:15340049)
(MGI:2389526|PMID:12410230)
MGI
Ensembl
PMID:12410230 PMID:15340049 GO_REF:0000107 MGI:2389526 MGI:3054495 NCBI chr11:2,469,750...2,874,467 JBrowse link
G KDM1B lysine demethylase 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4358629|PMID:19727073) MGI
Ensembl
PMID:19727073 GO_REF:0000107 MGI:4358629 NCBI chr 6:18,002,763...18,071,598
Ensembl chr 6:18,355,907...18,425,552
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638)
(PMID:15608638)
MGI
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G PRMT7 protein arginine methyltransferase 7 involved_in IEA Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chr16:48,687,324...48,734,883
Ensembl chr16:68,086,620...68,127,953
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6506156|PMID:33500348) MGI
Ensembl
PMID:33500348 GO_REF:0000107 MGI:6506156 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
regulation of gene expression, epigenetic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G CGGBP1 CGG triplet repeat binding protein 1 involved_in ISO (PMID:31547883) ARUK-UCL PMID:31547883 NCBI chr 3:88,190,366...88,197,367 JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G GLMN glomulin, FKBP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,907,342...94,963,052
Ensembl chr 1:93,646,499...93,701,430
JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826
JBrowse link
G HDAC4 histone deacetylase 4 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HDAC5 histone deacetylase 5 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr17:13,273,052...13,319,695
Ensembl chr17:13,446,836...13,479,140
JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,099,539...41,122,650
Ensembl chr  X:48,960,430...48,982,642
JBrowse link
G IFI16 interferon gamma inducible protein 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:134,364,706...134,405,910
Ensembl chr 1:138,152,328...138,203,424
JBrowse link
G KLF2 Kruppel like factor 2 acts_upstream_of_or_within ISO (MGI:5429781|PMID:22482507) MGI PMID:22482507 MGI:5429781 NCBI chr19:15,812,506...15,815,244 JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G LOC100985978 histone H3.1 involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,523,132...26,523,542
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100991861 histone H3.1 involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100993446 histone H1.8 involved_in ISO (MGI:5559660|PMID:22868987) GO_Central PMID:22868987 MGI:5559660 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243
JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:16267050) BHF-UCL PMID:16267050 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (MGI:3576944|PMID:15757975)
(MGI:3789859|PMID:17532643)
MGI PMID:15757975 PMID:17532643 MGI:3576944 MGI:3789859 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G MORC1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chr 3:106,091,990...106,251,790
Ensembl chr 3:113,021,874...113,180,331
JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr14:86,058,412...86,111,736 JBrowse link
G PRDM14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5429781|PMID:22482507) MGI PMID:22482507 MGI:5429781 NCBI chr 8:66,578,674...66,599,360
Ensembl chr 8:68,240,741...68,260,263
JBrowse link
G TDG thymine DNA glycosylase involved_in ISO (MGI:5141157|PMID:21722948), (MGI:5487523|PMID:21278727) UniProt PMID:21278727 PMID:21722948 MGI:5141157 MGI:5487523 NCBI chr12:101,543,945...101,567,035
Ensembl chr12:104,938,519...104,961,284
JBrowse link
G TFAP2C transcription factor AP-2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,966,907...52,981,024
Ensembl chr20:54,255,489...54,265,432
JBrowse link
G ZNF335 zinc finger protein 335 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,287,518...42,312,169
Ensembl chr20:43,374,591...43,397,724
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528755|PMID:24036311) MGI
Ensembl
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr11:10,884,353...10,913,246
Ensembl chr11:10,610,892...10,639,808
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr12:7,834,298...7,841,064 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:176,182,765...176,272,024
Ensembl chr 3:184,355,785...184,441,977
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
G TRIM28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319411|PMID:22495301) MGI
Ensembl
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr 4:180,152,673...180,162,899
Ensembl chr 4:192,349,144...192,350,076
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
G ZNF445 zinc finger protein 445 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:44,327,299...44,367,618
Ensembl chr 3:45,389,465...45,425,416
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974858 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
sperm DNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1855818|PMID:10775161) MGI
Ensembl
PMID:10775161 GO_REF:0000107 MGI:1855818 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100987154 testis-specific H1 histone involved_in ISO (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr12:40,402,590...40,406,005
Ensembl chr12:41,281,177...41,281,944
JBrowse link
G PRM1 protamine 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:10,222,779...10,223,289 JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 1:119,382,707...119,432,277
Ensembl chr 1:88,234,383...88,282,944
JBrowse link
G SYCP1 synaptonemal complex protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5315075|PMID:22164254) MGI
Ensembl
PMID:22164254 GO_REF:0000107 MGI:5315075 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TSSK6 testis specific serine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,952,643...18,954,101
Ensembl chr19:19,950,614...19,951,435
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRDT bromodomain testis associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,603,937...94,668,852
Ensembl chr 1:93,348,994...93,413,343
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2682484|PMID:14680821) MGI
Ensembl
PMID:14680821 GO_REF:0000107 MGI:2682484 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100979289 histone H2B type 1-A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:127,951,178...127,986,173
Ensembl chr12:132,169,820...132,199,374
JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:54,007,224...54,113,557
Ensembl chr2A:54,919,094...55,024,551
JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G SYCP3 synaptonemal complex protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G TNP2 transition protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:10,209,801...10,211,466
Ensembl chr16:11,431,822...11,433,087
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G LOC100970414 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15332
    cellular process 14173
      cellular component organization or biogenesis 5564
        cellular component organization 5425
          chromatin organization 420
            CENP-A containing chromatin organization + 4
            DNA replication-dependent chromatin organization + 18
            DNA replication-independent chromatin organization + 23
            chromatin assembly + 149
            chromatin looping 1
            chromatin remodeling + 202
            heterochromatin organization + 87
            modulation by virus of host chromatin organization 0
            negative regulation of chromatin organization + 5
            nucleolar chromatin organization + 11
            positive regulation of chromatin organization + 15
            regulation of chromatin organization + 44
            regulation of gene expression, epigenetic + 150
            sperm DNA condensation + 15
            sperm DNA decondensation + 0
Path 2
Term Annotations click to browse term
  biological_process 15332
    cellular process 14173
      cellular component organization or biogenesis 5564
        cellular component organization 5425
          organelle organization 3313
            chromosome organization 817
              chromatin organization 420
                CENP-A containing chromatin organization + 4
                DNA replication-dependent chromatin organization + 18
                DNA replication-independent chromatin organization + 23
                chromatin assembly + 149
                chromatin looping 1
                chromatin remodeling + 202
                heterochromatin organization + 87
                modulation by virus of host chromatin organization 0
                negative regulation of chromatin organization + 5
                nucleolar chromatin organization + 11
                positive regulation of chromatin organization + 15
                regulation of chromatin organization + 44
                regulation of gene expression, epigenetic + 150
                sperm DNA condensation + 15
                sperm DNA decondensation + 0
paths to the root