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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA recombination
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Accession:GO:0006310 term browser browse the term
Definition:Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.



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DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07029613.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AC108595.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G Actr8 actin related protein 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:19,425,684...19,508,459
Ensembl chr  X:19,487,419...19,508,439
JBrowse link
G Blm BLM RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca2 BRCA2, DNA repair associated IDA RGD PMID:12228710 RGD:632363 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Dclre1c DNA cross-link repair 1C acts_upstream_of_or_within ISO MGI:2667614 (MGI:2447929|PMID:12504013) RGD PMID:12504013 MGI:2447929 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:20,860,073...20,861,395 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2183944 (MGI:2153690|PMID:11707424)
UniProtKB:P07903 (PMID:11707424)
RGD PMID:11707424 MGI:2153690 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Exo1 exonuclease 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:P39875 (PMID:10364235)
RGD PMID:10364235 PMID:21873635 RGD:13792537 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb2 high mobility group box 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669
JBrowse link
G Iho1 interactor of HORMAD1 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434
JBrowse link
G Ino80c INO80 complex subunit C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Lig1 DNA ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535
JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:91,306,902...91,309,095 JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649
JBrowse link
G Msh2 mutS homolog 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:185,102,075...185,109,166
Ensembl chr 1:185,094,360...185,109,166
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO
ISS
(PMID:9705271)
GO_REF:0000024
RGD
UniProt
PMID:9705271 GO_REF:0000024 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51ap1 RAD51 associated protein 1 acts_upstream_of_or_within ISO PR:Q08297 (MGI:893977|PMID:9192668) RGD PMID:9192668 MGI:893977 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:19451272) RGD PMID:19451272 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in ISO (PMID:12370410), (PMID:8702565) RGD PMID:8702565 PMID:12370410 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rdm1 RAD52 motif containing 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:86,562,871...86,573,034
Ensembl chr10:86,539,553...86,573,034
JBrowse link
G Recql RecQ like helicase involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rpain RPA interacting protein acts_upstream_of_or_within ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:55,692,410...55,699,910
Ensembl chr10:55,692,417...55,699,933
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17961633)
Ensembl
UniProt
RGD
PMID:17961633 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054
JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
chiasma assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO MGI:4129733 (MGI:5700253|PMID:26490168) RGD PMID:26490168 MGI:5700253 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within
involved_in
ISO MGI:3050548 (MGI:3757893|PMID:17784788)
(MGI:5545848|PMID:24390283)
RGD PMID:17784788 PMID:24390283 MGI:3757893 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Rnf212 ring finger protein 212 involved_in ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:109542 (MGI:5315075|PMID:22164254)
GO_REF:0000107
RGD
Ensembl
PMID:22164254 PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within
ISO (MGI:2179610|PMID:12004129)
MGI:105931 (MGI:5315075|PMID:22164254)
RGD PMID:12004129 PMID:22164254 MGI:2179610 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of_or_within ISO MGI:3526163 (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:2450033|PMID:12556476) RGD PMID:12556476 MGI:2450033 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
DNA ligation involved in DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:1312981|PMID:9823897) RGD PMID:9823897 MGI:1312981 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IBA
(PMID:26681308)
PMID:21873635
RGD PMID:26681308 PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4129733 (MGI:5700253|PMID:26490168)
RGD PMID:26490168 PMID:21873635 MGI:5700253, RGD:13792537 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Brme1 break repair meiotic recombinase recruitment factor 1 involved_in ISO (MGI:6443349|PMID:32463460), (MGI:6447091|PMID:32345962), (MGI:6448646|PMID:32460033) RGD PMID:32345962 PMID:32460033 PMID:32463460 MGI:6443349 MGI:6447091 MGI:6448646 NCBI chr19:23,990,049...24,011,774
Ensembl chr19:23,990,045...24,011,850
JBrowse link
G Fancd2 FA complementation group D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Hsf2bp heat shock transcription factor 2 binding protein involved_in ISO (MGI:6283956|PMID:30760716), (MGI:6443349|PMID:32463460), (MGI:6447091|PMID:32345962), (MGI:6456264|PMID:31242413) RGD PMID:30760716 PMID:31242413 PMID:32345962 PMID:32463460 MGI:6283956 MGI:6443349 MGI:6447091 MGI:6456264 NCBI chr20:10,035,562...10,123,059
Ensembl chr20:10,035,562...10,121,242
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:1349669|MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Morc2b microrchidia 2B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:12,314,341...12,318,421
Ensembl chr 7:12,314,349...12,318,421
JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:6102131|PMID:25894966), (MGI:6114980|PMID:29478809)
UniProt
RGD
PMID:25894966 PMID:29478809 GO_REF:0000024 MGI:6102131 MGI:6114980 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO MGI:3045334 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Cdc7 cell division cycle 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:2,804,660...2,824,796
Ensembl chr14:2,804,661...2,824,778
JBrowse link
G Gins2 GINS complex subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gins4 GINS complex subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07035428.2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G AABR07067300.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC095390.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC117889.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC134087.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 involved_in ISO (PMID:20613862) RGD PMID:20613862 NCBI chr 3:118,429,618...118,436,256
Ensembl chr 3:118,429,637...118,432,926
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 involved_in ISO
IEA
(PMID:20613862)
GO_REF:0000107
RGD
Ensembl
PMID:20613862 GO_REF:0000107 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:12,093,834...12,108,511
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1857132 (MGI:3836659|PMID:19061978) RGD PMID:19061978 MGI:3836659 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Aunip aurora kinase A and ninein interacting protein involved_in ISS
ISO
GO_REF:0000024
(PMID:29042561)
UniProt
RGD
PMID:29042561 GO_REF:0000024 NCBI chr 5:146,722,157...146,736,233
Ensembl chr 5:146,722,337...146,736,501
JBrowse link
G Blm BLM RecQ like helicase involved_in IBA
ISO
PMID:21873635
(PMID:23543748)
RGD PMID:23543748 PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IBA
ISO
IEA
PMID:21873635
(PMID:17349954), (PMID:28398198)
GO_REF:0000107
RGD
Ensembl
PMID:17349954 PMID:28398198 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IBA
GO_REF:0000107
(PMID:20729832), (PMID:21719596), (PMID:28398198)
MGI:2653913|MGI:2653914 (MGI:3511388|PMID:15485900)
GO_REF:0000024
PMID:21873635
Ensembl
RGD
UniProt
PMID:15485900 PMID:20729832 PMID:21719596 PMID:28398198 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3511388, RGD:13792537 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IBA
ISO
PMID:21873635
(PMID:14728600)
RGD PMID:14728600 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:26833090) RGD PMID:26833090 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603015), (PMID:20603016) RGD PMID:20603015 PMID:20603016 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:23166748) RGD PMID:23166748 NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401
JBrowse link
G H2ax H2A.X variant histone acts_upstream_of_or_within ISO MGI:2156048 (MGI:2179182|PMID:11934988) RGD PMID:11934988 MGI:2179182 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Helq helicase, POLQ-like involved_in ISO (PMID:19995904) RGD PMID:19995904 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IBA
ISO
PMID:21873635
(MGI:3690191|PMID:16278671)
RGD PMID:16278671 PMID:21873635 MGI:3690191, RGD:13792537 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G Inip INTS3 and NABP interacting protein involved_in ISO (PMID:19683501) RGD PMID:19683501 NCBI chr 5:74,648,392...74,662,628
Ensembl chr 5:74,648,392...74,662,628
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO
IEA
(PMID:19683501)
GO_REF:0000107
RGD
Ensembl
PMID:19683501 GO_REF:0000107 NCBI chr 2:175,859,421...175,911,683
Ensembl chr 2:175,859,440...175,911,709
JBrowse link
G Kash5 KASH domain containing 5 acts_upstream_of_or_within ISO (MGI:5515826|PMID:24062341) RGD PMID:24062341 MGI:5515826 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368
JBrowse link
G Kdm4d lysine demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) RGD PMID:24550317 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G LOC103690165 checkpoint protein HUS1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO
IBA
ISS
(PMID:23401855)
(MGI:5437561|PMID:22771120)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22771120 PMID:23401855 PMID:21873635 GO_REF:0000024 MGI:5437561, RGD:13792537 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in IBA
ISO
PMID:21873635
(MGI:5437561|PMID:22771120), (MGI:5525985|PMID:23401855)
(PMID:22771115), (PMID:23401855)
RGD PMID:22771115 PMID:22771120 PMID:23401855 PMID:21873635 MGI:5437561 MGI:5525985, RGD:13792537 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537
G Meiob meiosis specific with OB-fold involved_in ISS
ISO
GO_REF:0000024
(MGI:5527015|PMID:24068956), (MGI:5538413|PMID:24240703)
UniProt
RGD
PMID:24068956 PMID:24240703 GO_REF:0000024 MGI:5527015 MGI:5538413 NCBI chr10:13,833,170...13,865,684
Ensembl chr10:13,833,750...13,865,046
JBrowse link
G Mms22l MMS22-like, DNA repair protein involved_in IBA
ISO
PMID:21873635
(PMID:21055983), (PMID:21055984), (PMID:21055985)
RGD PMID:21055983 PMID:21055984 PMID:21055985 PMID:21873635 RGD:13792537 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO
ISS
(PMID:20332121)
GO_REF:0000024
RGD
UniProt
PMID:20332121 GO_REF:0000024 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:29670289), (PMID:30612738)
UniProt
Ensembl
RGD
PMID:29670289 PMID:30612738 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:19605351), (PMID:19683501)
PMID:21873635
UniProt
RGD
PMID:19605351 PMID:19683501 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107
JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:19605351), (PMID:19683501)
PMID:21873635
UniProt
Ensembl
RGD
PMID:19605351 PMID:19683501 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027
JBrowse link
G Nbn nibrin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase involved_in ISO
IBA
ISS
IEA
(PMID:16810316)
PMID:21873635
GO_REF:0000024
GO_REF:0000002
RGD
UniProt
InterPro
PMID:16810316 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 7:90,936,112...91,173,435
Ensembl chr 7:90,936,112...91,164,899
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in IBA
ISO
PMID:21873635
(PMID:26323318)
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
JBrowse link
G Palb2 partner and localizer of BRCA2 involved_in IBA
ISO
PMID:21873635
(PMID:19369211), (PMID:19423707), (PMID:26323318), (PMID:28398198)
RGD PMID:19369211 PMID:19423707 PMID:26323318 PMID:28398198 PMID:21873635 RGD:13792537 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS
(PMID:20693240)
GO_REF:0000024
RGD
UniProt
PMID:20693240 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19995904) RGD PMID:19995904 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in ISO (PMID:22909820) RGD PMID:22909820 NCBI chr 3:46,254,338...46,347,076
Ensembl chr 3:46,254,330...46,347,076
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO MGI:1929645 (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad51 RAD51 recombinase acts_upstream_of_or_within
involved_in
IEP
ISO
(PMID:16428451)
(PMID:17996710), (PMID:17996711), (PMID:22778135), (PMID:23509288), (PMID:26681308), (PMID:27239033)
(MGI:3511388|PMID:15485900), (MGI:3525800|PMID:15359272)
RGD PMID:15359272 PMID:15485900 PMID:16428451 PMID:17996710 PMID:17996711 More... MGI:3511388 MGI:3525800, RGD:9831188 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in IBA
ISO
PMID:21873635
(PMID:26323318)
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad51b RAD51 paralog B involved_in IBA
ISO
PMID:21873635
(PMID:23149936)
RGD PMID:23149936 PMID:21873635 RGD:13792537 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:23149936) RGD PMID:23149936 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad51d RAD51 paralog D involved_in IBA
ISO
PMID:21873635
(PMID:23149936)
RGD PMID:23149936 PMID:21873635 RGD:13792537 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2446961|PMID:12379650)
RGD PMID:12379650 PMID:21873635 MGI:2446961, RGD:13792537 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rad54b RAD54 homolog B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:16428451)
MGI:3617695|MGI:894697 (MGI:3615835|PMID:16428451), (MGI:3836659|PMID:19061978)
RGD PMID:16428451 PMID:19061978 PMID:21873635 MGI:3615835 MGI:3836659, RGD:13792537 NCBI chr 5:25,030,885...25,104,616
Ensembl chr 5:25,032,066...25,104,616
JBrowse link
G Rad54l RAD54 like acts_upstream_of_or_within ISO MGI:2183934|MGI:3605986 (MGI:3615835|PMID:16428451), (MGI:3836659|PMID:19061978) RGD PMID:16428451 PMID:19061978 MGI:3615835 MGI:3836659 NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO MGI:3652039 (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Recql RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in ISO (PMID:26474068), (PMID:28575657), (PMID:28575658), (PMID:28691929) RGD PMID:26474068 PMID:28575657 PMID:28575658 PMID:28691929 NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
JBrowse link
G RGD1561465 similar to RIKEN cDNA 2900010J23 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:145,014,246...145,014,612
Ensembl chr 5:145,014,261...145,014,509
JBrowse link
G RGD1565844 similar to RIKEN cDNA 1700045I19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:30,739,541...30,740,614
Ensembl chr  X:30,739,413...30,740,613
JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in IBA
ISO
PMID:21873635
(PMID:23543748)
RGD PMID:23543748 PMID:21873635 RGD:13792537 NCBI chr17:6,256,537...6,264,523
Ensembl chr17:6,256,450...6,264,695
JBrowse link
G Rmi2 RecQ mediated genome instability 2 involved_in ISO (PMID:23543748) RGD PMID:23543748 NCBI chr10:4,829,333...4,837,264
Ensembl chr10:4,830,553...4,837,235
JBrowse link
G Rnf138 ring finger protein 138 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26502055), (PMID:26502057)
UniProt
RGD
PMID:26502055 PMID:26502057 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
JBrowse link
G Rpa1 replication protein A1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17765923)
MGI:3582609 (MGI:3056835|PMID:15470499)
PMID:21873635
RGD PMID:15470499 PMID:17765923 PMID:21873635 MGI:3056835, RGD:13792537 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:17765923)
UniProt
RGD
PMID:17765923 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IBA
ISO
PMID:21873635
(PMID:17765923)
RGD PMID:17765923 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:28834754), (PMID:29670289) RGD PMID:28834754 PMID:29670289 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3525800|PMID:15359272)
RGD PMID:15359272 PMID:21873635 MGI:3525800, RGD:13792537 NCBI chr 4:34,671,848...34,692,005
Ensembl chr 4:34,671,848...34,692,005
JBrowse link
G Sfpq splicing factor proline and glutamine rich acts_upstream_of_or_within ISO (PMID:20813759) RGD PMID:20813759 NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472
JBrowse link
G Sfr1 SWI5-dependent homologous recombination repair protein 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(MGI:4868525|PMID:20976249)
PMID:21873635
GO_REF:0000107
(PMID:21252223)
UniProt
RGD
Ensembl
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4868525, RGD:13792537 NCBI chr 1:246,619,235...246,623,250
Ensembl chr 1:246,597,044...246,623,250
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in IBA
ISO
PMID:21873635
(PMID:19595721)
RGD PMID:19595721 PMID:21873635 RGD:13792537 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721), (PMID:19596235) RGD PMID:19595721 PMID:19596235 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in ISO (PMID:16810316) RGD PMID:16810316 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746
JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IBA
ISO
PMID:21873635
(PMID:23509288)
RGD PMID:23509288 PMID:21873635 RGD:13792537 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600
JBrowse link
G Swi5 SWI5 homologous recombination repair protein involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:4868525|PMID:20976249)
(PMID:21252223)
PMID:21873635
UniProt
RGD
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 MGI:4868525, RGD:13792537 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805
JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 involved_in IBA
ISO
PMID:21873635
(PMID:21965664)
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr 8:20,486,680...20,489,213
Ensembl chr 8:20,486,678...20,489,211
JBrowse link
G Tonsl tonsoku-like, DNA repair protein involved_in ISO
ISS
(PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:30773278)
GO_REF:0000024
RGD
UniProt
PMID:21055983 PMID:21055984 PMID:21055985 PMID:30773278 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO
IEA
(PMID:23543748)
GO_REF:0000107
RGD
Ensembl
PMID:23543748 GO_REF:0000107 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559
JBrowse link
G Ube2n ubiquitin-conjugating enzyme E2N involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:30,154,330...30,184,373
Ensembl chr 7:30,154,616...30,184,355
JBrowse link
G Wdr48 WD repeat domain 48 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3877670 (MGI:5547894|PMID:24001775)
PMID:21873635
RGD PMID:24001775 PMID:21873635 MGI:5547894, RGD:13792537 NCBI chr 8:119,622,053...119,655,264
Ensembl chr 8:119,622,048...119,655,264
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:23149936)
MGI:3654106 (MGI:3652689|PMID:16777961)
PMID:21873635
RGD PMID:16777961 PMID:23149936 PMID:21873635 MGI:3652689, RGD:13792537 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in ISO (PMID:23149936) RGD PMID:23149936 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 involved_in ISO
IEA
(PMID:20613862)
GO_REF:0000002
GO_REF:0000107
RGD
InterPro
Ensembl
PMID:20613862 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:98,031,874...98,095,538
Ensembl chr 6:98,032,520...98,095,480
JBrowse link
G Zswim7 zinc finger, SWIM-type containing 7 involved_in ISO
IBA
(PMID:21965664)
PMID:21873635
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr10:46,953,311...46,969,800
Ensembl chr10:46,957,525...46,969,671
JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fancm FA complementation group M involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in ISO
ISS
(PMID:21247901)
GO_REF:0000024
RGD
UniProt
PMID:21247901 GO_REF:0000024 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
immunoglobulin heavy chain V-D-J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polb DNA polymerase beta acts_upstream_of_or_within ISO MGI:5427084 (MGI:5553198|PMID:24388753) RGD PMID:24388753 MGI:5553198 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO MGI:3624790 (MGI:5484711|PMID:23531880) RGD PMID:23531880 MGI:5484711 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
immunoglobulin V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyren cell cycle regulator of NHEJ involved_in ISS
ISO
GO_REF:0000024
(MGI:6202149|PMID:30017584), (MGI:6716972|PMID:31795137)
UniProt
RGD
PMID:30017584 PMID:31795137 GO_REF:0000024 MGI:6202149 MGI:6716972 NCBI chr 4:63,547,311...63,553,394
Ensembl chr 4:63,547,335...63,551,602
JBrowse link
G Foxp1 forkhead box P1 acts_upstream_of_or_within ISO MGI:3711150 (MGI:3662963|PMID:16819554) RGD PMID:16819554 MGI:3662963 NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1857732 (MGI:1312981|PMID:9823897)
RGD PMID:9823897 PMID:21873635 MGI:1312981, RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISO
ISS
(PMID:20558749)
GO_REF:0000024
RGD
UniProt
PMID:20558749 GO_REF:0000024 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2383951 (MGI:1290043|PMID:9768755)
RGD PMID:9768755 PMID:21873635 MGI:1290043, RGD:13792537 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Tcf3 transcription factor 3 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:16428437)
MGI:2178112 (MGI:3615721|PMID:16428437)
Ensembl
RGD
PMID:16428437 PMID:21873635 GO_REF:0000107 MGI:3615721, RGD:13792537 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1926771 (MGI:1913213|PMID:9875844)
RGD PMID:9875844 PMID:21873635 MGI:1913213, RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in
acts_upstream_of_or_within
ISO (MGI:5004983|PMID:21518874)
(MGI:3761960|PMID:17713479)
RGD PMID:17713479 PMID:21518874 MGI:3761960 MGI:5004983 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Atad5 ATPase family, AAA domain containing 5 acts_upstream_of ISO MGI:4127920 (MGI:5763555|PMID:25404367) RGD PMID:25404367 MGI:5763555 NCBI chr10:65,070,682...65,118,489
Ensembl chr10:65,070,689...65,117,845
JBrowse link
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:4456325|PMID:20421391), (MGI:5004732|PMID:21572431)
UniProt
RGD
PMID:20421391 PMID:21572431 GO_REF:0000024 MGI:4456325 MGI:5004732 NCBI chr 6:105,353,715...105,376,051
Ensembl chr 6:105,353,715...105,376,051
JBrowse link
G Cd40lg CD40 ligand involved_in IEA
ISO
GO_REF:0000107
(MGI:3687427|PMID:7529792)
Ensembl
RGD
PMID:7529792 GO_REF:0000107 MGI:3687427 NCBI chr  X:135,127,119...135,138,302
Ensembl chr  X:135,126,969...135,138,306
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2183944 (MGI:3052883|PMID:15280420) RGD PMID:15280420 MGI:3052883 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Exo1 exonuclease 1 acts_upstream_of_or_within ISO MGI:2653925 (MGI:3028407|PMID:14716311) RGD PMID:14716311 MGI:3028407 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Exosc3 exosome component 3 involved_in ISO (MGI:5009766|PMID:21255825) RGD PMID:21255825 MGI:5009766 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc6 exosome component 6 involved_in ISO (MGI:5009766|PMID:21255825) RGD PMID:21255825 MGI:5009766 NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:3761960|PMID:17713479) RGD PMID:17713479 MGI:3761960 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857946 (MGI:2662086|PMID:12743174)
Ensembl
RGD
PMID:12743174 GO_REF:0000107 MGI:2662086 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857940|MGI:2151801 (MGI:1342394|PMID:10430621), (MGI:2662086|PMID:12743174)
Ensembl
RGD
PMID:10430621 PMID:12743174 GO_REF:0000107 MGI:1342394 MGI:2662086 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within ISO MGI:109352|MGI:3653701 (MGI:3641510|PMID:16618598), (MGI:3723381|PMID:17015724) RGD PMID:16618598 PMID:17015724 MGI:3641510 MGI:3723381 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Nbn nibrin involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3529405|PMID:15668383)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15668383 GO_REF:0000024 GO_REF:0000107 MGI:3529405 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Rnf168 ring finger protein 168 involved_in ISS
ISO
GO_REF:0000024
(MGI:4420833|PMID:20080757)
UniProt
RGD
PMID:20080757 GO_REF:0000024 MGI:4420833 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:4420833|PMID:20080757)
UniProt
RGD
PMID:20080757 GO_REF:0000024 MGI:4420833 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Swap70 switching B-cell complex subunit SWAP70 acts_upstream_of_or_within ISO (MGI:1270060|PMID:9642267) RGD PMID:9642267 MGI:1270060 NCBI chr 1:164,267,588...164,328,796
Ensembl chr 1:164,267,609...164,328,794
JBrowse link
G Ung uracil-DNA glycosylase acts_upstream_of_or_within ISO MGI:1343961 (MGI:3723381|PMID:17015724) RGD PMID:17015724 MGI:3723381 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of_or_within ISO MGI:1926771|MGI:3047571|MGI:3641440 (MGI:3761960|PMID:17713479) RGD PMID:17713479 MGI:3761960 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in ISO (MGI:5787846|PMID:27174992) RGD PMID:27174992 MGI:5787846 NCBI chr 1:52,474,477...52,508,301
Ensembl chr 1:52,474,168...52,498,603
JBrowse link
isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspd1 heat shock protein family D (Hsp60) member 1 involved_in ISO (PMID:16148103) RGD PMID:16148103 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
meiotic DNA double-strand break formation involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd31 ankyrin repeat domain 31 involved_in ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) RGD PMID:31000436 PMID:31003867 MGI:6316415 MGI:6316551 NCBI chr 2:28,079,187...28,241,722
Ensembl chr 2:28,092,882...28,241,719
JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO MGI:4129733 (MGI:5700253|PMID:26490168) RGD PMID:26490168 MGI:5700253 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Six6os1 Six6 opposite strand transcript 1 involved_in IBA
ISO
PMID:21873635
(MGI:5822939|PMID:27796301)
RGD PMID:27796301 PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
meiotic gene conversion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm9 PR/SET domain 9 acts_upstream_of_or_within ISO (PMID:21750151) RGD PMID:21750151 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Rnf212 ring finger protein 212 involved_in ISO (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) RGD PMID:23396135 PMID:24390283 MGI:5487470 MGI:5545848 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Tex11 testis expressed 11 involved_in ISO (MGI:3797180|PMID:18369460) RGD PMID:18369460 MGI:3797180 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
meiotic joint molecule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psmc3ip PSMC3 interacting protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
meiotic strand invasion involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psmc3ip PSMC3 interacting protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423
JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO
IBA
(PMID:8811092)
PMID:21873635
RGD PMID:8811092 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Msh3 mutS homolog 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Rad51 RAD51 recombinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
negative regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO (PMID:9671747) RGD PMID:9671747 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Lig3 DNA ligase 3 acts_upstream_of_or_within ISO MGI:3629052 (MGI:3625660|PMID:16648486) RGD PMID:16648486 MGI:3625660 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:17715146)
MGI:1858055 (MGI:1351797|PMID:10545954), (MGI:74950|PMID:7628020)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:7628020 PMID:10545954 PMID:17715146 PMID:21873635 GO_REF:0000107 MGI:1351797 MGI:74950, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 involved_in ISO (PMID:17715146) RGD PMID:17715146 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17715146)
MGI:2151803 (MGI:1351797|PMID:10545954)
PMID:21873635
RGD PMID:10545954 PMID:17715146 PMID:21873635 MGI:1351797, RGD:13792537 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO MGI:3835812 (MGI:2448116|PMID:12509447) RGD PMID:12509447 MGI:2448116 NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IBA
ISO
PMID:21873635
(MGI:5645200|PMID:22579284)
RGD PMID:22579284 PMID:21873635 MGI:5645200, RGD:13792537 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:22704558) RGD PMID:22704558 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
negative regulation of DNA recombination at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1b protection of telomeres 1B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532
JBrowse link
G Terf2ip TERF2 interacting protein involved_in ISS
ISO
GO_REF:0000024
(MGI:4440768|PMID:20339076), (MGI:4839412|PMID:20622869)
UniProt
RGD
PMID:20339076 PMID:20622869 GO_REF:0000024 MGI:4440768 MGI:4839412 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cgas cyclic GMP-AMP synthase involved_in IBA
ISO
PMID:21873635
(MGI:6241455|PMID:30356214), (MGI:6370284|PMID:31544964)
(PMID:30356214), (PMID:31544964)
RGD PMID:30356214 PMID:31544964 PMID:21873635 MGI:6241455 MGI:6370284, RGD:13792537 NCBI chr 8:79,292,282...79,306,998
Ensembl chr 8:79,294,511...79,305,496
JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2156841 (MGI:5648586|PMID:25520194)
RGD PMID:25520194 PMID:21873635 MGI:5648586, RGD:13792537 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192
JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in ISO (PMID:19736316)
(MGI:5566975|PMID:24108124)
RGD PMID:19736316 PMID:24108124 MGI:5566975 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G Helb DNA helicase B involved_in IBA
ISO
PMID:21873635
(MGI:5766842|PMID:26774285)
(PMID:26774285)
RGD PMID:26774285 PMID:21873635 MGI:5766842, RGD:13792537 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G Klhl15 kelch-like family member 15 involved_in ISO (PMID:27561354) RGD PMID:27561354 NCBI chr  X:58,994,726...59,050,207
Ensembl chr  X:58,995,461...59,046,069
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Parpbp PARP1 binding protein involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000002
GO_REF:0000107
PMID:21873635
(PMID:22153967)
UniProt
InterPro
Ensembl
RGD
PMID:22153967 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 7:22,511,427...22,580,834
Ensembl chr 7:22,511,427...22,573,695
JBrowse link
G Pmch pro-melanin-concentrating hormone involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:22,511,934...22,513,250
Ensembl chr 7:22,511,934...22,513,250
JBrowse link
G Polq DNA polymerase theta involved_in ISO (PMID:25642963)
(MGI:5621198|PMID:25642960)
RGD PMID:25642960 PMID:25642963 MGI:5621198 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked involved_in ISO
ISS
(PMID:28735897)
GO_REF:0000024
RGD
UniProt
PMID:28735897 GO_REF:0000024 NCBI chr  X:103,089,284...103,176,840
Ensembl chr  X:103,089,284...103,176,838
JBrowse link
G Recql5 RecQ like helicase 5 acts_upstream_of_or_within ISO MGI:2448558 (MGI:5648586|PMID:25520194) RGD PMID:25520194 MGI:5648586 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (PMID:23333306)
(MGI:5468037|PMID:23306437), (MGI:5476381|PMID:23333305)
RGD PMID:23306437 PMID:23333305 PMID:23333306 MGI:5468037 MGI:5476381 NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
JBrowse link
G Rmi2 RecQ mediated genome instability 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,829,333...4,837,264
Ensembl chr10:4,830,553...4,837,235
JBrowse link
G Shld1 shieldin complex subunit 1 involved_in ISO
IBA
(PMID:29656893)
PMID:21873635
RGD PMID:29656893 PMID:21873635 RGD:13792537 NCBI chr 3:119,938,695...120,011,068
Ensembl chr 3:119,938,833...120,009,550
JBrowse link
G Shld2 shieldin complex subunit 2 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
JBrowse link
G Shld3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr 2:35,294,956...35,301,865
Ensembl chr 2:35,295,859...35,302,346
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO (PMID:25294876) RGD PMID:25294876 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in ISO (PMID:23333306), (PMID:23345425)
(MGI:5476381|PMID:23333305), (MGI:5887194|PMID:20362325)
RGD PMID:20362325 PMID:23333305 PMID:23333306 PMID:23345425 MGI:5476381 MGI:5887194 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:30612738) RGD PMID:30612738 NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059
JBrowse link
negative regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp3 poly (ADP-ribose) polymerase family, member 3 involved_in ISO (MGI:6214451|PMID:26000965) RGD PMID:26000965 MGI:6214451 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
negative regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Da2-19 uncharacterized LOC302729 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:44,820,693...44,837,935
Ensembl chr  X:44,820,820...44,837,934
JBrowse link
G Thoc1 THO complex 1 involved_in ISO
IEA
(MGI:5520039|PMID:22144908)
GO_REF:0000107
RGD
Ensembl
PMID:22144908 GO_REF:0000107 MGI:5520039 NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
JBrowse link
negative regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 BCL6, transcription repressor acts_upstream_of_or_within ISO MGI:103034|MGI:2158438 (MGI:1345885|PMID:10490661) RGD PMID:10490661 MGI:1345885 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO MGI:3696705 (MGI:3695768|PMID:16275384) RGD PMID:16275384 MGI:3695768 NCBI chr  X:14,908,494...14,924,994
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO MGI:3695433 (MGI:3694584|PMID:17137798) RGD PMID:17137798 MGI:3694584 NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
JBrowse link
negative regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 involved_in ISO UniProtKB:O88700 (MGI:5800654|PMID:27010503) RGD PMID:27010503 MGI:5800654 NCBI chr16:18,076,413...18,082,356
Ensembl chr16:18,076,492...18,083,729
JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within
involved_in
ISO MGI:1857708|MGI:2158669|MGI:2158670|MGI:3053044|MGI:3663359 (MGI:1312959|PMID:9808625), (MGI:1928200|PMID:11101838), (MGI:3655554|PMID:16914751), (MGI:3700903|PMID:17210642)
UniProtKB:A8VU90 (MGI:5800654|PMID:27010503)
RGD PMID:9808625 PMID:11101838 PMID:16914751 PMID:17210642 PMID:27010503 MGI:1312959 MGI:1928200 MGI:3655554 MGI:3700903 MGI:5800654 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858054 (MGI:3513725|PMID:15480418)
Ensembl
RGD
PMID:15480418 GO_REF:0000107 MGI:3513725 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
negative regulation of telomere maintenance via recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf2 telomeric repeat binding factor 2 involved_in ISO
IBA
(PMID:15507207)
(MGI:5883205|PMID:24120135)
PMID:21873635
RGD PMID:15507207 PMID:24120135 PMID:21873635 MGI:5883205, RGD:13792537 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819
JBrowse link
non-replicative transposition, DNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pgbd5 piggyBac transposable element derived 5 involved_in IBA
ISO
PMID:21873635
(PMID:26406119)
RGD PMID:26406119 PMID:21873635 RGD:13792537 NCBI chr19:52,336,751...52,401,906
Ensembl chr19:52,336,751...52,402,397
JBrowse link
positive regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035725.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 involved_in ISO
IEA
(MGI:6358520|PMID:31453335)
GO_REF:0000107
RGD
Ensembl
PMID:31453335 GO_REF:0000107 MGI:6358520 NCBI chr12:18,880,625...18,910,713
Ensembl chr12:18,880,633...18,910,711
JBrowse link
G Zcwpw1l1 zinc finger CW-type and PWWP domain containing 1-like 1 involved_in ISO (MGI:6358520|PMID:31453335) RGD PMID:31453335 MGI:6358520 NCBI chr12:17,798,650...17,812,208 JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actl6a actin-like 6A involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actr2 actin related protein 2 involved_in ISO
ISS
(PMID:29925947)
GO_REF:0000024
RGD
UniProt
PMID:29925947 GO_REF:0000024 NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524
JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in ISO (PMID:28381560) RGD PMID:28381560 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512
JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO MGI:2448558 (MGI:5648586|PMID:25520194) RGD PMID:25520194 MGI:5648586 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brd8 bromodomain containing 8 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr18:26,181,744...26,230,035
Ensembl chr18:26,181,732...26,229,884
JBrowse link
G Brd8dc BRD8 domain containing involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Ep400 E1A binding protein p400 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425
JBrowse link
G Epc2 enhancer of polycomb homolog 2 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 3:33,867,219...33,967,908
Ensembl chr 3:33,867,219...33,967,150
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:25820262) RGD PMID:25820262 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1328362 (MGI:5648586|PMID:25520194)
RGD PMID:25520194 PMID:21873635 MGI:5648586, RGD:13792537 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192
JBrowse link
G Fus FUS RNA binding protein involved_in ISO (PMID:10567410) RGD PMID:10567410 NCBI chr 1:182,576,479...182,590,417
Ensembl chr 1:182,576,545...182,590,414
JBrowse link
G Hdgfl2 HDGF like 2 involved_in ISO
ISS
(PMID:26721387)
GO_REF:0000024
RGD
UniProt
PMID:26721387 GO_REF:0000024 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186
JBrowse link
G Ing3 inhibitor of growth family, member 3 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Khdc3 KH domain containing 3, subcortical maternal complex member involved_in ISO
ISS
(PMID:31609975)
(MGI:6716962|PMID:25936915)
GO_REF:0000024
RGD
UniProt
PMID:25936915 PMID:31609975 GO_REF:0000024 MGI:6716962 NCBI chr 8:73,842,344...73,844,248
Ensembl chr 8:73,842,344...73,844,248
JBrowse link
G Mbtd1 mbt domain containing 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr10:78,839,140...78,895,413
Ensembl chr10:78,839,036...78,893,720
JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 5:137,344,681...137,369,703
Ensembl chr 5:137,344,380...137,370,014
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in ISO (PMID:29225034) RGD PMID:29225034 NCBI chr 1:240,757,279...240,794,291
Ensembl chr 1:240,757,282...240,794,288
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728
JBrowse link
G Mrgbp MRG domain binding protein involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 3:167,697,129...167,700,592
Ensembl chr 3:167,697,185...167,700,592
JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) RGD PMID:27568553 NCBI chr10:34,501,359...34,525,474
Ensembl chr10:34,501,384...34,525,469
JBrowse link
G Ooep oocyte expressed protein involved_in ISO (MGI:6272426|PMID:29955025) RGD PMID:29955025 MGI:6272426 NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
ISS
(PMID:26344098), (PMID:30356214)
GO_REF:0000024
RGD
UniProt
PMID:26344098 PMID:30356214 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Pogz pogo transposable element derived with ZNF domain involved_in ISO
IEA
(PMID:26721387)
GO_REF:0000107
RGD
Ensembl
PMID:26721387 GO_REF:0000107 NCBI chr 2:182,394,269...182,440,711
Ensembl chr 2:182,380,768...182,440,707
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) RGD PMID:17996710 PMID:17996711 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in ISO
ISS
(PMID:26721387)
GO_REF:0000024
RGD
UniProt
PMID:26721387 GO_REF:0000024 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Timeless timeless circadian regulator involved_in ISO
IEA
ISS
(PMID:26344098), (PMID:30356214)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26344098 PMID:30356214 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738
JBrowse link
G Trrap transformation/transcription domain-associated protein involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Was WASP actin nucleation promoting factor involved_in ISO (PMID:29925947) RGD PMID:29925947 NCBI chr  X:14,405,096...14,413,850
Ensembl chr  X:14,405,124...14,413,849
JBrowse link
G Wdr48 WD repeat domain 48 involved_in ISO (PMID:27239033), (PMID:27463890) RGD PMID:27239033 PMID:27463890 NCBI chr 8:119,622,053...119,655,264
Ensembl chr 8:119,622,048...119,655,264
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
ISS
(PMID:25512560)
GO_REF:0000024
RGD
UniProt
PMID:25512560 GO_REF:0000024 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
G Yeats4 YEATS domain containing 4 involved_in ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635
JBrowse link
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:3763508|PMID:12496423) RGD PMID:12496423 MGI:3763508 NCBI chr13:73,723,329...73,746,809
Ensembl chr13:73,723,329...73,746,788
JBrowse link
positive regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 acts_upstream_of_or_within ISO (MGI:5009766|PMID:21255825) RGD PMID:21255825 MGI:5009766 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc6 exosome component 6 acts_upstream_of_or_within ISO (MGI:5009766|PMID:21255825) RGD PMID:21255825 MGI:5009766 NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in ISS
ISO
GO_REF:0000024
(MGI:6393148|PMID:31806351)
UniProt
RGD
PMID:31806351 GO_REF:0000024 MGI:6393148 NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in ISS
ISO
GO_REF:0000024
(MGI:6370097|PMID:28114273)
UniProt
RGD
PMID:28114273 GO_REF:0000024 MGI:6370097 NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in ISS
ISO
GO_REF:0000024
(MGI:6370097|PMID:28114273)
UniProt
RGD
PMID:28114273 GO_REF:0000024 MGI:6370097 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:4821506|PMID:20671152) RGD PMID:20671152 MGI:4821506 NCBI chr 4:7,524,887...7,576,663
Ensembl chr 4:7,525,004...7,576,548
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in ISO (MGI:5468036|PMID:23306439), (MGI:5476381|PMID:23333305), (MGI:5490831|PMID:23333306) RGD PMID:23306439 PMID:23333305 PMID:23333306 MGI:5468036 MGI:5476381 MGI:5490831 NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
JBrowse link
G Shld1 shieldin complex subunit 1 involved_in ISO
IBA
(PMID:29656893)
PMID:21873635
RGD PMID:29656893 PMID:21873635 RGD:13792537 NCBI chr 3:119,938,695...120,011,068
Ensembl chr 3:119,938,833...120,009,550
JBrowse link
G Shld2 shieldin complex subunit 2 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
JBrowse link
G Shld3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) RGD PMID:29656893 NCBI chr 2:35,294,956...35,301,865
Ensembl chr 2:35,295,859...35,302,346
JBrowse link
G Tfrc transferrin receptor involved_in ISS
ISO
GO_REF:0000024
(PMID:26642240)
UniProt
RGD
PMID:26642240 GO_REF:0000024 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in ISO (PMID:23345425), (PMID:23760478)
(MGI:3041657|PMID:15077110), (MGI:3046005|PMID:15159415)
RGD PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478 MGI:3041657 MGI:3046005 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
positive regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:1342394|PMID:10430621)
Ensembl
RGD
PMID:10430621 GO_REF:0000107 MGI:1342394 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:1342394|PMID:10430621)
Ensembl
RGD
PMID:10430621 GO_REF:0000107 MGI:1342394 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO (MGI:5462481|PMID:23241889) RGD PMID:23241889 MGI:5462481 NCBI chr14:76,833,194...76,911,304
Ensembl chr14:76,835,637...76,913,641
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component involved_in ISO UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621) RGD PMID:10430621 MGI:1342394 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:14988498)
AgBase
RGD
PMID:14988498 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnfsf13 TNF superfamily member 13 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:14988498)
MGI:3038886 (MGI:3037416|PMID:14988498)
RGD PMID:14988498 PMID:21873635 MGI:3037416, RGD:13792537 NCBI chr10:54,400,054...54,403,723
Ensembl chr10:54,400,065...54,403,042
JBrowse link
positive regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clcf1 cardiotrophin-like cytokine factor 1 involved_in ISO (MGI:3777853|PMID:12023368) RGD PMID:12023368 MGI:3777853 NCBI chr 1:201,507,763...201,517,607
Ensembl chr 1:201,507,859...201,517,605
JBrowse link
G Il4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3037416|PMID:14988498)
RGD PMID:14988498 PMID:21873635 MGI:3037416, RGD:13792537 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Stat6 signal transducer and activator of transcription 6 acts_upstream_of_or_within ISO MGI:107187 (MGI:1345885|PMID:10490661) RGD PMID:10490661 MGI:1345885 NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495
JBrowse link
positive regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family, AAA domain containing 5 acts_upstream_of_or_within ISO MGI:4127920 (MGI:5763555|PMID:25404367) RGD PMID:25404367 MGI:5763555 NCBI chr10:65,070,682...65,118,489
Ensembl chr10:65,070,689...65,117,845
JBrowse link
G Cd28 Cd28 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857150 (MGI:62368|PMID:7688139)
Ensembl
RGD
PMID:7688139 GO_REF:0000107 MGI:62368 NCBI chr 9:62,166,324...62,194,674
Ensembl chr 9:62,166,192...62,194,685
JBrowse link
G Cd40 CD40 molecule involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2670820|PMID:12882831)
RGD PMID:12882831 PMID:21873635 MGI:2670820, RGD:13792537 NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (MGI:2670820|PMID:12882831) RGD PMID:12882831 MGI:2670820 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Il2 interleukin 2 acts_upstream_of_or_within ISO MGI:1857191 (MGI:87443|PMID:1830926) RGD PMID:1830926 MGI:87443 NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566
JBrowse link
G Il4 interleukin 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2670820|PMID:12882831), (MGI:3037416|PMID:14988498)
RGD PMID:12882831 PMID:14988498 PMID:21873635 MGI:2670820 MGI:3037416, RGD:13792537 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Mlh1 mutL homolog 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:1342394|PMID:10430621)
Ensembl
RGD
PMID:10430621 GO_REF:0000107 MGI:1342394 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:1342394|PMID:10430621)
Ensembl
RGD
PMID:10430621 GO_REF:0000107 MGI:1342394 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 involved_in ISO (MGI:5752090|PMID:26744420) RGD PMID:26744420 MGI:5752090 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:5752090|PMID:26744420) RGD PMID:26744420 MGI:5752090 NCBI chr 4:7,524,887...7,576,663
Ensembl chr 4:7,525,004...7,576,548
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component involved_in ISO UniProtKB:Q9JK91 (MGI:1342394|PMID:10430621) RGD PMID:10430621 MGI:1342394 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of_or_within ISO MGI:2181288 (MGI:85031|PMID:9015183) RGD PMID:9015183 MGI:85031 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Tbx21 T-box transcription factor 21 acts_upstream_of_or_within ISO MGI:2180194 (MGI:2670820|PMID:12882831) RGD PMID:12882831 MGI:2670820 NCBI chr10:82,082,322...82,098,831
Ensembl chr10:82,082,322...82,098,831
JBrowse link
positive regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
positive regulation of reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm9 PR/SET domain 9 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:21750151)
(MGI:4452589|PMID:20044538), (MGI:5306625|PMID:22028627)
RGD PMID:20044538 PMID:21750151 PMID:22028627 PMID:21873635 MGI:4452589 MGI:5306625, RGD:13792537 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:17996711) RGD PMID:17996711 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:2450033|PMID:12556476) RGD PMID:12556476 MGI:2450033 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
positive regulation of strand invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wrn WRN RecQ like helicase involved_in ISO (PMID:26420422) RGD PMID:26420422 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC119332.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:201,899,310...201,989,570 JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 involved_in IBA
ISO
PMID:21873635
(MGI:5545848|PMID:24390283)
RGD PMID:24390283 PMID:21873635 MGI:5545848, RGD:13792537 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Cep63 centrosomal protein 63 acts_upstream_of_or_within ISO MGI:4377328 (MGI:5662131|PMID:26158450) RGD PMID:26158450 MGI:5662131 NCBI chr 8:103,162,639...103,214,177
Ensembl chr 8:103,162,700...103,214,177
JBrowse link
G Chtf18 chromosome transmission fidelity factor 18 acts_upstream_of_or_within ISO MGI:2177588 (MGI:5470363|PMID:23133398) RGD PMID:23133398 MGI:5470363 NCBI chr10:14,743,006...14,751,044
Ensembl chr10:14,742,621...14,751,050
JBrowse link
G Cntd1 cyclin N-terminal domain containing 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4363686 (MGI:5606256|PMID:24891606)
RGD PMID:24891606 PMID:21873635 MGI:5606256, RGD:13792537 NCBI chr10:86,221,430...86,231,812 JBrowse link
G Dmc1 DNA meiotic recombinase 1 involved_in IBA
ISO
PMID:21873635
(PMID:21307306)
RGD PMID:21307306 PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G LOC689986 hypothetical protein LOC689986 involved_in ISO
IBA
(MGI:6478065|PMID:30746471)
PMID:21873635
RGD PMID:30746471 PMID:21873635 MGI:6478065, RGD:13792537 NCBI chr14:2,230,404...2,270,782
Ensembl chr14:2,231,451...2,270,782
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO MGI:1857946 (MGI:1340178|PMID:10385520), (MGI:3612347|PMID:16307920), (MGI:81751|PMID:8673133) RGD PMID:8673133 PMID:10385520 PMID:16307920 MGI:1340178 MGI:3612347 MGI:81751 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mnd1 meiotic nuclear divisions 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:169,433,538...169,496,081
Ensembl chr 2:169,433,540...169,496,096
JBrowse link
G Msh3 mutS homolog 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh5 mutS homolog 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G Psmc3ip PSMC3 interacting protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423
JBrowse link
G Rad50 RAD50 double strand break repair protein TAS RGD PMID:10908350 RGD:68816 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51 RAD51 recombinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51c RAD51 paralog C involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3707422|MGI:3707425 (MGI:3703317|PMID:17312021)
RGD PMID:17312021 PMID:21873635 MGI:3703317, RGD:13792537 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad51d RAD51 paralog D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rad54b RAD54 homolog B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:25,030,885...25,104,616
Ensembl chr 5:25,032,066...25,104,616
JBrowse link
G RGD1563323 similar to hypothetical protein FLJ22531 involved_in ISO (MGI:5752405|PMID:26917764) RGD PMID:26917764 MGI:5752405 NCBI chr 1:201,902,564...201,989,945 JBrowse link
G Rnf212 ring finger protein 212 involved_in ISO (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) RGD PMID:23396135 PMID:24390283 MGI:5487470 MGI:5545848 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Shoc1 shortage in chiasmata 1 involved_in ISO (MGI:6272683|PMID:30272023) RGD PMID:30272023 MGI:6272683 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2178805 (MGI:3612347|PMID:16307920)
RGD PMID:16307920 PMID:21873635 MGI:3612347, RGD:13792537 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5008660|PMID:21637789)
RGD PMID:21637789 PMID:21873635 MGI:5008660, RGD:13792537 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3579731|PMID:15937223)
UniProt
RGD
PMID:15937223 GO_REF:0000024 MGI:3579731 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Tex11 testis expressed 11 involved_in IBA
ISO
PMID:21873635
(MGI:3797180|PMID:18369460)
RGD PMID:18369460 PMID:21873635 MGI:3797180, RGD:13792537 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex19.1 testis expressed 19.1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:106,420,245...106,422,452
Ensembl chr10:106,420,139...106,422,425
JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:4821667|PMID:20711356)
MGI:3719273 (MGI:3719060|PMID:17696610)
GO_REF:0000024
RGD
UniProt
PMID:17696610 PMID:20711356 PMID:21873635 GO_REF:0000024 MGI:3719060 MGI:4821667, RGD:13792537 NCBI chr 1:29,357,093...29,402,078
Ensembl chr 1:29,357,130...29,402,074
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (MGI:5908463|PMID:28708824) RGD PMID:28708824 MGI:5908463 NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139
JBrowse link
recombinational interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO (PMID:23401855) RGD PMID:23401855 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:23401855)
(MGI:5525985|PMID:23401855)
RGD PMID:23401855 MGI:5525985 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbh1 F-box DNA helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IBA
ISO
PMID:21873635
(PMID:21659603)
RGD PMID:21659603 PMID:21873635 RGD:13792537 NCBI chr 4:161,634,047...161,639,437
Ensembl chr 4:161,634,048...161,639,371
JBrowse link
regulation of DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor involved_in ISO (PMID:22144908) RGD PMID:22144908 NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:44,820,693...44,837,935
Ensembl chr  X:44,820,820...44,837,934
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in ISO (PMID:11031099) RGD PMID:11031099 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Thoc1 THO complex 1 involved_in ISO (PMID:22144908) RGD PMID:22144908 NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:15665856)
UniProt
RGD
PMID:15665856 GO_REF:0000024 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Fignl1 fidgetin-like 1 involved_in ISO
ISS
(PMID:23754376)
GO_REF:0000024
RGD
UniProt
PMID:23754376 GO_REF:0000024 NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455
JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Ppp4c protein phosphatase 4, catalytic subunit involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:20154705)
Ensembl
UniProt
RGD
PMID:20154705 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:181,392,899...181,399,703
Ensembl chr 1:181,392,923...181,399,659
JBrowse link
G Ppp4r2 protein phosphatase 4, regulatory subunit 2 involved_in ISO (PMID:20154705) RGD PMID:20154705 NCBI chr 4:133,454,555...133,495,486
Ensembl chr 4:133,454,555...133,495,486
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:23754376) RGD PMID:23754376 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:23754376) RGD PMID:23754376 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rpa2 replication protein A2 involved_in ISO
ISS
(PMID:20154705)
GO_REF:0000024
RGD
UniProt
PMID:20154705 GO_REF:0000024 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000104
PMID:21873635
(PMID:18957201)
UniProt
RGD
PMID:18957201 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) RGD PMID:24843002 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:19135889) RGD PMID:19135889 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in ISO (PMID:23754376) RGD PMID:23754376 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600
JBrowse link
G Terf2ip TERF2 interacting protein involved_in ISS
ISO
GO_REF:0000024
(MGI:4440768|PMID:20339076)
UniProt
RGD
PMID:20339076 GO_REF:0000024 MGI:4440768 NCBI chr19:39,976,965...39,984,055
Ensembl chr19:39,976,906...39,984,064
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3526165 (MGI:3794139|PMID:18283110)
PMID:21873635
RGD PMID:18283110 PMID:21873635 MGI:3794139, RGD:13792537 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) RGD PMID:27083998 NCBI chr  X:18,374,940...18,381,472
Ensembl chr  X:18,376,930...18,379,888
JBrowse link
G Zfp365 zinc finger protein 365 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23966166)
UniProt
RGD
PMID:23966166 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:20,666,240...20,689,734
Ensembl chr20:20,666,240...20,691,238
JBrowse link
regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor acts_upstream_of_or_within ISO MGI:4128102 (MGI:4887518|PMID:21211721) RGD PMID:21211721 MGI:4887518 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Mir181b1 microRNA 181b-1 acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) RGD PMID:18762567 MGI:3817382 NCBI chr13:49,485,688...49,485,797
Ensembl chr13:49,485,688...49,485,797
JBrowse link
G Mir181b2 microRNA 181b-2 acts_upstream_of_or_within ISO (MGI:3817382|PMID:18762567) RGD PMID:18762567 MGI:3817382 NCBI chr 3:22,616,948...22,617,035
Ensembl chr 3:22,616,948...22,617,035
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5004983|PMID:21518874) RGD PMID:21518874 MGI:5004983 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO MGI:3696705 (MGI:3695768|PMID:16275384) RGD PMID:16275384 MGI:3695768 NCBI chr  X:14,908,494...14,924,994
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Il27ra interleukin 27 receptor subunit alpha acts_upstream_of_or_within ISO MGI:3525439 (MGI:1926579|PMID:11057672) RGD PMID:11057672 MGI:1926579 NCBI chr19:24,109,698...24,121,977
Ensembl chr19:24,109,972...24,121,938
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO MGI:3695433 (MGI:3694584|PMID:17137798) RGD PMID:17137798 MGI:3694584 NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
JBrowse link
G Slc15a4 solute carrier family 15 member 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5649169|PMID:25310967)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25310967 GO_REF:0000024 GO_REF:0000107 MGI:5649169 NCBI chr12:29,048,634...29,082,480
Ensembl chr12:29,063,015...29,082,480
JBrowse link
regulation of mitotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad50 RAD50 double strand break repair protein involved_in ISO
ISS
(PMID:8756642)
GO_REF:0000024
RGD
UniProt
PMID:8756642 GO_REF:0000024 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
replication-born double-strand break repair via sister chromatid exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (MGI:5648566|PMID:25597246) RGD PMID:25597246 MGI:5648566 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5648586|PMID:25520194)
RGD PMID:25520194 PMID:21873635 MGI:5648586, RGD:13792537 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Rad21 RAD21 cohesin complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad51 RAD51 recombinase acts_upstream_of_or_within ISO MGI:5444025|MGI:5444027 (MGI:5442243|PMID:22778135) RGD PMID:22778135 MGI:5442243 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Recql5 RecQ like helicase 5 acts_upstream_of_or_within ISO (MGI:5648586|PMID:25520194) RGD PMID:25520194 MGI:5648586 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO (PMID:28002403) RGD PMID:28002403 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
resolution of meiotic recombination intermediates term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030926.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07048387.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:73,866,334...73,956,444 JBrowse link
G AC117889.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Cenps centromere protein S involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr 5:159,563,917...159,573,534 JBrowse link
G Cenpx centromere protein X involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr10:105,991,469...105,994,411 JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,586,736...79,595,515
Ensembl chr10:79,586,729...79,595,435
JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,913,216...13,915,991
Ensembl chr10:13,913,221...13,915,968
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Fancm FA complementation group M involved_in ISO (PMID:20347428) RGD PMID:20347428 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
JBrowse link
G Hfm1 helicase for meiosis 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5477835|PMID:23555294)
RGD PMID:23555294 PMID:21873635 MGI:5477835, RGD:13792537 NCBI chr14:2,857,251...2,943,766
Ensembl chr14:2,856,599...2,939,238
JBrowse link
G Meiob meiosis specific with OB-fold involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5527015|PMID:24068956), (MGI:5538413|PMID:24240703)
PMID:21873635
UniProt
RGD
PMID:24068956 PMID:24240703 PMID:21873635 GO_REF:0000024 MGI:5527015 MGI:5538413, RGD:13792537 NCBI chr10:13,833,170...13,865,684
Ensembl chr10:13,833,750...13,865,046
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857946 (MGI:1340178|PMID:10385520), (MGI:2386157|PMID:12217320)
Ensembl
RGD
PMID:10385520 PMID:12217320 GO_REF:0000107 MGI:1340178 MGI:2386157 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh4 mutS homolog 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,256,537...6,264,523
Ensembl chr17:6,256,450...6,264,695
JBrowse link
G Shoc1 shortage in chiasmata 1 involved_in ISO
IBA
(MGI:6159552|PMID:29742103)
PMID:21873635
RGD PMID:29742103 PMID:21873635 MGI:6159552, RGD:13792537 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of_or_within ISO MGI:3526163 (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
resolution of mitotic recombination intermediates term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:23108668) RGD PMID:23108668 NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IBA
ISO
PMID:21873635
(PMID:23108668)
RGD PMID:23108668 PMID:21873635 RGD:13792537 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
resolution of recombination intermediates term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO
IEA
(PMID:23543748)
GO_REF:0000107
RGD
Ensembl
PMID:23543748 GO_REF:0000107 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:24080495) RGD PMID:24080495 NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401
JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in ISO
IEA
(PMID:23543748)
GO_REF:0000107
RGD
Ensembl
PMID:23543748 GO_REF:0000107 NCBI chr17:6,256,537...6,264,523
Ensembl chr17:6,256,450...6,264,695
JBrowse link
G Rmi2 RecQ mediated genome instability 2 involved_in ISO (PMID:23543748) RGD PMID:23543748 NCBI chr10:4,829,333...4,837,264
Ensembl chr10:4,830,553...4,837,235
JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO
IEA
(PMID:23543748)
GO_REF:0000107
RGD
Ensembl
PMID:23543748 GO_REF:0000107 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559
JBrowse link
somatic cell DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Swap70 switching B-cell complex subunit SWAP70 acts_upstream_of_or_within ISO (MGI:1270060|PMID:9642267) RGD PMID:9642267 MGI:1270060 NCBI chr 1:164,267,588...164,328,796
Ensembl chr 1:164,267,609...164,328,794
JBrowse link
somatic recombination of immunoglobulin gene segments term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO MGI:1857946 (MGI:3722579|PMID:11828012) RGD PMID:11828012 MGI:3722579 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within ISO MGI:109352|MGI:1857940|MGI:2151801|MGI:2680817 (MGI:2679186|PMID:14568978), (MGI:3513244|PMID:15494304), (MGI:3581477|PMID:15955838), (MGI:3582380|PMID:14563316), (MGI:3722579|PMID:11828012) RGD PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838 MGI:2679186 MGI:3513244 MGI:3581477 MGI:3582380 MGI:3722579 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1858056 (MGI:3046392|PMID:15238604)
RGD PMID:15238604 PMID:21873635 MGI:3046392, RGD:13792537 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1858014 (MGI:3046392|PMID:15238604)
RGD PMID:15238604 PMID:21873635 MGI:3046392, RGD:13792537 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component acts_upstream_of_or_within ISO MGI:1857947 (MGI:3722579|PMID:11828012) RGD PMID:11828012 MGI:3722579 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Ung uracil-DNA glycosylase acts_upstream_of_or_within ISO MGI:101816|MGI:2182610 (MGI:3513244|PMID:15494304) RGD PMID:15494304 MGI:3513244 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
somatic recombination of immunoglobulin genes involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO MGI:101816 (MGI:2662086|PMID:12743174) RGD PMID:12743174 MGI:2662086 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:101938 (MGI:2662086|PMID:12743174)
RGD PMID:12743174 PMID:21873635 MGI:2662086, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
strand displacement term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5645200|PMID:22579284) RGD PMID:22579284 MGI:5645200 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
strand invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Rad51 RAD51 recombinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51d RAD51 paralog D involved_in IBA
ISO
PMID:21873635
(PMID:11834724)
RGD PMID:11834724 PMID:21873635 RGD:13792537 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in IBA
ISO
PMID:21873635
(PMID:11834724)
RGD PMID:11834724 PMID:21873635 RGD:13792537 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
T cell receptor V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B acts_upstream_of_or_within ISO MGI:2663971 (MGI:2662810|PMID:12717433) RGD PMID:12717433 MGI:2662810 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98507 (MGI:3640275|PMID:9462507)
Ensembl
RGD
PMID:9462507 GO_REF:0000107 MGI:3640275 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:1860400|PMID:10911993) RGD PMID:10911993 MGI:1860400 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:2383951 (MGI:1290043|PMID:9768755) RGD PMID:9768755 MGI:1290043 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:96770 (MGI:3640275|PMID:9462507) RGD PMID:9462507 MGI:3640275 NCBI chr10:36,423,443...36,454,350
Ensembl chr10:36,423,445...36,453,535
JBrowse link
telomere maintenance via recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q13207 (MGI:5707585|PMID:21076401)
Ensembl
RGD
PMID:21076401 GO_REF:0000107 MGI:5707585 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase involved_in ISO
ISS
(PMID:17589526)
GO_REF:0000024
RGD
UniProt
PMID:17589526 GO_REF:0000024 NCBI chr 7:90,936,112...91,173,435
Ensembl chr 7:90,936,112...91,164,899
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO UniProtKB:P02340 (MGI:5707585|PMID:21076401) RGD PMID:21076401 MGI:5707585 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO UniProtKB:P02340 (MGI:5707585|PMID:21076401) RGD PMID:21076401 MGI:5707585 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad51d RAD51 paralog D involved_in ISO (PMID:15109494) RGD PMID:15109494 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in ISO (PMID:17589526) RGD PMID:17589526 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in ISO (PMID:17589526) RGD PMID:17589526 NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746
JBrowse link
G Tep1 telomerase associated protein 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:10810353)
Ensembl
RGD
PMID:10810353 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr15:24,045,876...24,093,526
Ensembl chr15:24,045,878...24,093,526
JBrowse link
G Tprkb Tp53rk binding protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:118,342,910...118,357,908
Ensembl chr 4:118,342,945...118,357,901
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IBA
ISO
PMID:21873635
(PMID:15507207)
RGD PMID:15507207 PMID:21873635 RGD:13792537 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
telomeric DNA-containing double minutes formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:14690602) RGD PMID:14690602 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:14690602) RGD PMID:14690602 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
transposition, DNA-mediated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC107597.2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AC115371.2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AC142178.3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (MGI:5543316|PMID:23836881) RGD PMID:23836881 MGI:5543316 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in ISO (MGI:5314150|PMID:22157821) RGD PMID:22157821 MGI:5314150 NCBI chr 8:107,466,229...107,540,633
Ensembl chr 8:107,474,312...107,540,627
JBrowse link
G Dclre1c DNA cross-link repair 1C acts_upstream_of_or_within ISO (MGI:5543316|PMID:23836881) RGD PMID:23836881 MGI:5543316 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:9166431) RGD PMID:9166431 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Lig1 DNA ligase 1 NOT|involved_in ISO (PMID:9809069) RGD PMID:9809069 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 NOT|involved_in ISO (PMID:9809069) RGD PMID:9809069 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
ISO (PMID:9809069)
MGI:1857732 (MGI:3052572|PMID:15194694), (MGI:3641390|PMID:10716994)
RGD PMID:9809069 PMID:10716994 PMID:15194694 MGI:3052572 MGI:3641390 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:107202 (MGI:5543316|PMID:23836881) RGD PMID:23836881 MGI:5543316 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rag1 recombination activating 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:14670978)
MGI:97849 (MGI:59028|PMID:2360047)
(MGI:4441018|PMID:20122409), (MGI:4441148|PMID:10601033), (MGI:50458|PMID:1547488), (MGI:64624|PMID:8284210)
PMID:21873635
RGD PMID:1547488 PMID:2360047 PMID:8284210 PMID:10601033 PMID:14670978 More... MGI:4441018 MGI:4441148 MGI:50458 MGI:59028 MGI:64624, RGD:13792537 NCBI chr 3:87,917,061...87,928,158
Ensembl chr 3:87,917,004...87,928,291
JBrowse link
G Rag2 recombination activating 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4441252|PMID:18033247), (MGI:50458|PMID:1547488)
MGI:97848 (MGI:59028|PMID:2360047)
RGD PMID:1547488 PMID:2360047 PMID:18033247 PMID:21873635 MGI:4441252 MGI:50458 MGI:59028, RGD:13792537 NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of_or_within ISO MGI:1926771 (MGI:3641390|PMID:10716994) RGD PMID:10716994 MGI:3641390 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 acts_upstream_of_or_within ISO MGI:2179954 (MGI:3641390|PMID:10716994) RGD PMID:10716994 MGI:3641390 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular metabolic process 10922
        cellular macromolecule metabolic process 6319
          DNA metabolic process 928
            DNA recombination 334
              DNA ligation involved in DNA recombination 1
              RNA-mediated DNA recombination 0
              homologous recombination + 57
              intrachromosomal DNA recombination 0
              intron homing + 0
              meiotic heteroduplex formation 0
              mitochondrion DNA recombination 0
              mitotic recombination + 24
              negative regulation of DNA recombination + 48
              plasmid recombination 0
              positive regulation of DNA recombination + 76
              recombination within rDNA repeats 0
              recombinational repair + 172
              regulation of DNA recombination + 136
              resolution of recombination intermediates + 6
              somatic cell DNA recombination + 78
              strand displacement + 1
              strand invasion + 6
              transposition, DNA-mediated + 4
Path 2
Term Annotations click to browse term
  biological_process 19834
    metabolic process 12042
      cellular metabolic process 10922
        cellular nitrogen compound metabolic process 6716
          nucleobase-containing compound metabolic process 5513
            nucleic acid metabolic process 5019
              DNA metabolic process 928
                DNA recombination 334
                  DNA ligation involved in DNA recombination 1
                  RNA-mediated DNA recombination 0
                  homologous recombination + 57
                  intrachromosomal DNA recombination 0
                  intron homing + 0
                  meiotic heteroduplex formation 0
                  mitochondrion DNA recombination 0
                  mitotic recombination + 24
                  negative regulation of DNA recombination + 48
                  plasmid recombination 0
                  positive regulation of DNA recombination + 76
                  recombination within rDNA repeats 0
                  recombinational repair + 172
                  regulation of DNA recombination + 136
                  resolution of recombination intermediates + 6
                  somatic cell DNA recombination + 78
                  strand displacement + 1
                  strand invasion + 6
                  transposition, DNA-mediated + 4
paths to the root