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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA methylation
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Accession:GO:0006306 term browser browse the term
Definition:The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
Synonyms:xref: Wikipedia:DNA_methylation
 never_in_taxon: NCBITaxon:4895 ! Schizosaccharomyces;   NCBITaxon:4930 ! Saccharomyces

show annotations for term's descendants           Sort by:
 
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650 		JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Ctcf CCCTC-binding factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:2450195|PMID:12461525), (MGI:5522578|PMID:24105743)		 Ensembl
RGD		 PMID:12461525 PMID:24105743 GO_REF:0000107 MGI:2450195 MGI:5522578 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:29115507 RGD:25823175 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within ISO MGI:1261819|MGI:1261827|MGI:1930971 (MGI:2152690|PMID:11399088), (MGI:3655888|PMID:16887828), (MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467), (MGI:6151717|PMID:27841881) RGD PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:12138111), (PMID:19786833), (PMID:23042785), (PMID:30478443)
MGI:1261819|MGI:94912 (MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864), (MGI:3768461|PMID:17938196), (MGI:6151717|PMID:27841881)		 RGD PMID:11399089 PMID:11934864 PMID:12138111 PMID:17938196 PMID:19786833 More... MGI:2152692 MGI:2178074 MGI:3768461 MGI:6151717, RGD:8554662 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:1859287|MGI:3047833|MGI:94912 (MGI:3623538|PMID:16543361), (MGI:3768461|PMID:17938196), (MGI:5320860|PMID:22133874), (MGI:6151717|PMID:27841881) RGD PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within ISO MGI:2155766 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in ISO (MGI:3826717|PMID:18818694) RGD PMID:18818694 MGI:3826717 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in ISO (MGI:3826717|PMID:18818694) RGD PMID:18818694 MGI:3826717 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:4459474 (MGI:4454202|PMID:20427744) RGD PMID:20427744 MGI:4454202 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hells helicase, lymphoid specific involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2178586 (MGI:2153312|PMID:11711429)		 RGD PMID:11711429 PMID:21873635 MGI:2153312, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:3625774 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Kmt2e lysine methyltransferase 2E involved_in ISO (MGI:3834766|PMID:18854576) RGD PMID:18854576 MGI:3834766 NCBI chr 4:11,657,811...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Mta2 metastasis associated 1 family, member 2 acts_upstream_of_or_within ISO (MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:4888087 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IC PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
ISO		 GO_REF:0000024
(MGI:5512657|PMID:24074862)		 UniProt
RGD		 PMID:24074862 GO_REF:0000024 MGI:5512657 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:5811689|PMID:27856912) RGD PMID:27856912 MGI:5811689 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:5762940 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5762940|PMID:23560077)		 RGD PMID:23560077 PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193 		JBrowse link
DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IMP RGD PMID:21682946 RGD:9588311 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 GO_REF:0000107
MGI:1261819|MGI:1261827|MGI:1857157 (MGI:49689|PMID:1606615), (MGI:6151717|PMID:27841881)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)		 Ensembl
RGD		 PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:3045942|PMID:15215868)
MGI:1261819|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583), (MGI:6151717|PMID:27841881)		 RGD PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:6151717|PMID:27841881), (PMID:18814855) RGD PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within ISO MGI:6161219 (MGI:6151717|PMID:27841881) RGD PMID:27841881 MGI:6151717 NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265 		JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:18622393)
MGI:3826984 (MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
GO_REF:0000024		 RGD
UniProt		 PMID:18622393 PMID:18854139 PMID:33500348 GO_REF:0000024 MGI:3826319 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846 		JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:4356194 NCBI chr 4:46,400,485...46,456,085
Ensembl chr 4:46,400,485...46,456,085 		JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949 		JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4443217|PMID:20439430)		 UniProt
RGD		 PMID:20439430 GO_REF:0000024 MGI:4443217 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (MGI:3045942|PMID:15215868) RGD PMID:15215868 MGI:3045942 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3054275|PMID:15318244)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15318244 GO_REF:0000024 GO_REF:0000107 MGI:3054275 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5439219|PMID:22902560)		 UniProt
RGD		 PMID:22902560 GO_REF:0000024 MGI:5439219 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO MGI:4359289 (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:4457283 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) RGD PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463)		 UniProt
RGD		 PMID:18381894 PMID:18922463 GO_REF:0000024 MGI:3778312 MGI:3815367 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943610|PMID:21397847) RGD PMID:21397847 MGI:4943610 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3692841|PMID:17048991)		 UniProt
RGD		 PMID:17048991 GO_REF:0000024 MGI:3692841 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:88,133,271...88,205,729
Ensembl chr 1:88,133,373...88,205,705 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4418580|PMID:20059948)		 UniProt
RGD		 PMID:20059948 GO_REF:0000024 MGI:4418580 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in ISO (MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:5494327 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 involved_in ISO (PMID:32183942)
(MGI:6323482|PMID:30982744)		 RGD PMID:30982744 PMID:32183942 MGI:6323482 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in
NOT|involved_in		 ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)		 RGD PMID:30017583 PMID:30392959 PMID:31632689 PMID:31636962 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248 		JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within IDA
ISO		 MGI:1857157 (MGI:49689|PMID:1606615) RGD PMID:1606615 PMID:22880885 MGI:49689, RGD:9588218 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha IDA RGD PMID:22880885 RGD:9588218 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3054275|PMID:15318244)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15318244 GO_REF:0000024 GO_REF:0000107 MGI:3054275 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IDA RGD PMID:3856245 RGD:2301219 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:3718157|PMID:17212651) RGD PMID:17212651 MGI:3718157 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
hypermethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (PMID:20139074) RGD PMID:20139074 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
hypomethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5553039|PMID:24074865)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24074865 GO_REF:0000024 GO_REF:0000107 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:20010842) RGD PMID:20010842 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:5553039|PMID:24074865)		 Ensembl
UniProt
RGD		 PMID:24074865 GO_REF:0000024 GO_REF:0000107 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23960241)		 Ensembl
RGD		 PMID:23960241 GO_REF:0000107 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) RGD PMID:19786833 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of ISO (PMID:23042785) RGD PMID:23042785 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07017902.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:27,225,434...27,225,910 JBrowse link
G AABR07026842.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07058017.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07061871.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
GO_REF:0000024		 RGD
UniProt		 PMID:17143267 PMID:21407207 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 IDA RGD PMID:22880885 RGD:9588218 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (MGI:4936795|PMID:21118898) RGD PMID:21118898 MGI:4936795 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Grhl2 grainyhead-like transcription factor 2 involved_in ISO (PMID:20938050), (PMID:23254293) RGD PMID:20938050 PMID:23254293 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G H1f8 H1.8 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:5559660|PMID:22868987)		 UniProt
RGD		 PMID:22868987 GO_REF:0000024 MGI:5559660 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G Kdm1b lysine demethylase 1B involved_in ISO (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 IEP RGD PMID:20735989 RGD:9588647 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP
IMP		 RGD PMID:20735989 PMID:20735989 RGD:9588647, RGD:9588647 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within ISO MGI:5441069 (MGI:5438906|PMID:22516971) RGD PMID:22516971 MGI:5438906 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO
ISS		 (PMID:20871592)
GO_REF:0000024		 RGD
UniProt		 PMID:20871592 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IMP RGD PMID:23260200 RGD:10413908 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO MGI:4441771 (MGI:5506832|PMID:23670199) RGD PMID:23670199 MGI:5506832 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 IMP RGD PMID:22041901 RGD:9491827 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Rlf RLF zinc finger acts_upstream_of_or_within ISO MGI:5515366 (MGI:5693990|PMID:25857663) RGD PMID:25857663 MGI:5693990 NCBI chr 5:134,711,612...134,767,274
Ensembl chr 5:134,711,619...134,767,257 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:4939073|PMID:21295276) RGD PMID:21295276 MGI:4939073 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      methylation 373
        macromolecule methylation 337
          DNA methylation 78
            DNA methylation involved in embryo development + 16
            DNA methylation involved in gamete generation 19
            DNA methylation on adenine 2
            DNA methylation on cytosine + 7
            negative regulation of DNA methylation 2
            positive regulation of DNA methylation 4
            regulation of DNA methylation + 37
Path 2
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular metabolic process 10717
        cellular nitrogen compound metabolic process 6561
          nucleobase-containing compound metabolic process 5378
            nucleic acid metabolic process 4888
              DNA metabolic process 883
                DNA modification 108
                  DNA methylation or demethylation 95
                    DNA methylation 78
                      DNA methylation involved in embryo development + 16
                      DNA methylation involved in gamete generation 19
                      DNA methylation on adenine 2
                      DNA methylation on cytosine + 7
                      negative regulation of DNA methylation 2
                      positive regulation of DNA methylation 4
                      regulation of DNA methylation + 37
paths to the root