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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA methylation
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Accession:GO:0006306 term browser browse the term
Definition:The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
Synonyms:xref: Wikipedia:DNA_methylation
 never_in_taxon: NCBITaxon:4895 ! Schizosaccharomyces;   NCBITaxon:4896 ! Schizosaccharomyces pombe;   NCBITaxon:4930 ! Saccharomyces;   NCBITaxon:4932 ! Saccharomyces cerevisiae


show annotations for term's descendants           Sort by:
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650 		JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within ISO (MGI:2450195|PMID:12461525), (MGI:5522578|PMID:24105743) RGD PMID:12461525 PMID:24105743 MGI:2450195 MGI:5522578 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:29115507 RGD:25823175 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within IEP
ISO		 MGI:1261819|MGI:1261827|MGI:1930971 (MGI:2152690|PMID:11399088), (MGI:3655888|PMID:16887828), (MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467), (MGI:6151717|PMID:27841881) RGD PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 More... MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717, RGD:9588311 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:12138111), (PMID:19786833), (PMID:23042785), (PMID:30478443)
MGI:1261819|MGI:94912 (MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864), (MGI:3768461|PMID:17938196), (MGI:6151717|PMID:27841881)		 RGD PMID:11399089 PMID:11934864 PMID:12138111 PMID:17938196 PMID:19786833 More... MGI:2152692 MGI:2178074 MGI:3768461 MGI:6151717, RGD:8554662 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:1859287|MGI:3047833|MGI:94912 (MGI:3623538|PMID:16543361), (MGI:3768461|PMID:17938196), (MGI:5320860|PMID:22133874), (MGI:6151717|PMID:27841881) RGD PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2155766 (MGI:5694015|PMID:25503965)
GO_REF:0000002		 RGD
InterPro		 PMID:25503965 GO_REF:0000002 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in ISO
IBA		 (MGI:3826717|PMID:18818694)
PMID:21873635		 RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in ISO
IBA		 (MGI:3826717|PMID:18818694)
PMID:21873635		 RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:4459474 (MGI:4454202|PMID:20427744) RGD PMID:20427744 MGI:4454202 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hells helicase, lymphoid specific involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2178586 (MGI:2153312|PMID:11711429)		 RGD PMID:11711429 PMID:21873635 MGI:2153312, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:3625774 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Kmt2e lysine methyltransferase 2E involved_in ISO (MGI:3834766|PMID:18854576) RGD PMID:18854576 MGI:3834766 NCBI chr 4:11,657,811...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within ISO MGI:4840060 (MGI:4839866|PMID:20610486), (MGI:5465388|PMID:23195472) RGD PMID:20610486 PMID:23195472 MGI:4839866 MGI:5465388 NCBI chr 6:128,491,808...128,524,010 JBrowse link
G Mta2 metastasis associated 1 family, member 2 acts_upstream_of_or_within ISO (MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:4888087 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IC PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
ISO		 GO_REF:0000024
(MGI:5512657|PMID:24074862)		 UniProt
RGD		 PMID:24074862 GO_REF:0000024 MGI:5512657 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (MGI:6220563|PMID:30186101)
GO_REF:0000107		 RGD
Ensembl		 PMID:30186101 GO_REF:0000107 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317)
(MGI:6447460|PMID:32719317)		 RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000002
(MGI:2152690|PMID:11399088)		 InterPro
RGD		 PMID:11399088 GO_REF:0000002 MGI:2152690 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO (PMID:25383530)
(MGI:1270098|PMID:9662389)
MGI:1261819 (MGI:3768461|PMID:17938196)		 RGD PMID:9662389 PMID:17938196 PMID:25383530 MGI:1270098 MGI:3768461 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:5811689|PMID:27856912)
(MGI:3623538|PMID:16543361), (MGI:5811689|PMID:27856912)
PMID:21873635
(PMID:32083663)		 RGD PMID:16543361 PMID:27856912 PMID:32083663 PMID:21873635 MGI:3623538 MGI:5811689, RGD:13792537 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISO (PMID:25383530), (PMID:32083663) RGD PMID:25383530 PMID:32083663 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:5762940 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6103984|PMID:28930672)		 UniProt
RGD		 PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977 		JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:6103984|PMID:28930672)		 UniProt
RGD		 PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:6103984|PMID:28930672)
(MGI:5762940|PMID:23560077)		 RGD PMID:23560077 PMID:28930672 PMID:21873635 MGI:5762940 MGI:6103984, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193 		JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 GO_REF:0000107
MGI:1261819|MGI:1261827|MGI:1857157 (MGI:49689|PMID:1606615), (MGI:6151717|PMID:27841881)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)		 Ensembl
RGD		 PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:3045942|PMID:15215868)
MGI:1261819|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583), (MGI:6151717|PMID:27841881)		 RGD PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in		 ISO MGI:1261827|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:6151717|PMID:27841881), (PMID:18814855)
(MGI:3826753|PMID:18814855)		 RGD PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:3826753 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:6161219 (MGI:6151717|PMID:27841881)
PMID:21873635		 RGD PMID:27841881 PMID:21873635 MGI:6151717, RGD:13792537 NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265 		JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:18622393)
MGI:3826984 (MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
GO_REF:0000024		 RGD
UniProt		 PMID:18622393 PMID:18854139 PMID:33500348 GO_REF:0000024 MGI:3826319 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846 		JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:4356194 NCBI chr 4:46,400,485...46,456,085
Ensembl chr 4:46,400,485...46,456,085 		JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949 		JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4443217|PMID:20439430)		 UniProt
RGD		 PMID:20439430 GO_REF:0000024 MGI:4443217 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (MGI:3045942|PMID:15215868) RGD PMID:15215868 MGI:3045942 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO		 GO_REF:0000024
(MGI:3054275|PMID:15318244)		 UniProt
RGD		 PMID:15318244 GO_REF:0000024 MGI:3054275 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5439219|PMID:22902560)		 UniProt
RGD		 PMID:22902560 GO_REF:0000024 MGI:5439219 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO MGI:4359289 (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:4457283 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) RGD PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463)		 UniProt
RGD		 PMID:18381894 PMID:18922463 GO_REF:0000024 MGI:3778312 MGI:3815367 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943610|PMID:21397847) RGD PMID:21397847 MGI:4943610 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:88,133,271...88,205,729
Ensembl chr 1:88,133,373...88,205,705 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4418580|PMID:20059948)		 UniProt
RGD		 PMID:20059948 GO_REF:0000024 MGI:4418580 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in ISO (MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:5494327 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO
IBA		 (PMID:32183942)
PMID:21873635
(MGI:6323482|PMID:30982744)		 RGD PMID:30982744 PMID:32183942 PMID:21873635 MGI:6323482, RGD:13792537 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in
NOT|involved_in		 ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)		 RGD PMID:30017583 PMID:30392959 PMID:31632689 PMID:31636962 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248 		JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within IDA
ISO		 MGI:1857157 (MGI:49689|PMID:1606615) RGD PMID:1606615 PMID:22880885 MGI:49689, RGD:9588218 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:22880885 PMID:21873635 RGD:9588218, RGD:13792537 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3c DNA methyltransferase 3C involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr 3:142,178,533...142,210,954 JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:3054275|PMID:15318244)		 UniProt
RGD		 PMID:15318244 PMID:21873635 GO_REF:0000024 MGI:3054275, RGD:13792537 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IDA RGD PMID:3856245 RGD:2301219 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:3718157|PMID:17212651) RGD PMID:17212651 MGI:3718157 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
maintenance of DNA methylation at imprinted genes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
GO_REF:0000024		 RGD
UniProt		 PMID:17143267 PMID:21407207 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G LOC120096627 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859 		JBrowse link
G LOC120096971 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910 		JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in ISO
ISS		 (MGI:5553039|PMID:24074865)
GO_REF:0000024		 RGD
UniProt		 PMID:24074865 GO_REF:0000024 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:20010842) RGD PMID:20010842 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO		 GO_REF:0000024
(MGI:5553039|PMID:24074865)		 UniProt
RGD		 PMID:24074865 GO_REF:0000024 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO (PMID:23960241) RGD PMID:23960241 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) RGD PMID:19786833 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of ISO (PMID:23042785) RGD PMID:23042785 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 IDA RGD PMID:22880885 RGD:9588218 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (MGI:4936795|PMID:21118898) RGD PMID:21118898 MGI:4936795 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Grhl2 grainyhead-like transcription factor 2 involved_in ISO (PMID:20938050), (PMID:23254293) RGD PMID:20938050 PMID:23254293 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G H19 H19 imprinted maternally expressed transcript acts_upstream_of_or_within ISO (MGI:1096753|PMID:9294195) RGD PMID:9294195 MGI:1096753 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G H1f8 H1.8 linker histone involved_in ISO (MGI:5559660|PMID:22868987) RGD PMID:22868987 MGI:5559660 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G Kdm1b lysine demethylase 1B involved_in ISO (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 IEP RGD PMID:20735989 RGD:9588647 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP
IMP		 RGD PMID:20735989 PMID:20735989 RGD:9588647, RGD:9588647 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mir29a microRNA 29a involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr 4:59,650,608...59,650,695 JBrowse link
G Mir29b1 microRNA 29b-1 involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr 4:59,650,987...59,651,067
Ensembl chr 4:59,650,986...59,651,067 		JBrowse link
G Mir29b2 microRNA 29b-2 involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456 		JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within ISO MGI:5441069 (MGI:5438906|PMID:22516971) RGD PMID:22516971 MGI:5438906 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO
IBA
ISS		 (PMID:20871592)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:20871592 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IMP RGD PMID:23260200 RGD:10413908 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO MGI:4441771 (MGI:5506832|PMID:23670199) RGD PMID:23670199 MGI:5506832 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 IMP RGD PMID:22041901 RGD:9491827 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Rlf RLF zinc finger acts_upstream_of_or_within ISO MGI:5515366 (MGI:5693990|PMID:25857663) RGD PMID:25857663 MGI:5693990 NCBI chr 5:134,711,612...134,767,274
Ensembl chr 5:134,711,619...134,767,257 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:4939073|PMID:21295276) RGD PMID:21295276 MGI:4939073 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19898
    metabolic process 12211
      methylation 392
        macromolecule methylation 356
          DNA methylation 80
            DNA methylation involved in embryo development + 13
            DNA methylation involved in gamete generation 19
            DNA methylation on adenine 2
            DNA methylation on cytosine + 8
            negative regulation of DNA methylation 2
            positive regulation of DNA methylation 4
            regulation of DNA methylation + 28
Path 2
Term Annotations click to browse term
  biological_process 19898
    metabolic process 12211
      cellular metabolic process 9631
        cellular aromatic compound metabolic process 5916
          nucleobase-containing compound metabolic process 5683
            nucleic acid metabolic process 5187
              DNA metabolic process 1030
                DNA modification 111
                  DNA alkylation 80
                    DNA methylation 80
                      DNA methylation involved in embryo development + 13
                      DNA methylation involved in gamete generation 19
                      DNA methylation on adenine 2
                      DNA methylation on cytosine + 8
                      negative regulation of DNA methylation 2
                      positive regulation of DNA methylation 4
                      regulation of DNA methylation + 28
paths to the root