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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA modification
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Accession:GO:0006304 term browser browse the term
Definition:The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.


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DNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dntt DNA nucleotidylexotransferase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936636:3,153,454...3,189,774 JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO positive regulation of DNA adduct formation RGD PMID:24025706 RGD:7829724 NCBI chrNW_004936663:345,021...355,188 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936486:16,744,607...16,923,209 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5566725|PMID:24205360) MGI
Ensembl
PMID:24205360 GO_REF:0000107 MGI:5566725 NCBI chrNW_004936529:264,535...266,451 JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IEA GOC
Ensembl
GO_REF:0000107 GO_REF:0000108 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5811689|PMID:27856912) MGI
GOC
PMID:27856912 GO_REF:0000108 MGI:5811689 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5762940|PMID:23560077) MGI
Ensembl
PMID:23560077 GO_REF:0000107 MGI:5762940 NCBI chrNW_004936508:5,229,734...5,267,094 JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,771,141...1,775,593 JBrowse link
DNA ADP-ribosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601 JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:554,969...564,905 JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,291,282...3,297,581 JBrowse link
DNA cytosine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO RGD PMID:12697753 RGD:1358271 NCBI chrNW_004939393:628...6,234 JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:2,336,613...2,395,816 JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530) UniProt PMID:18603530 NCBI chrNW_004936488:6,459,195...6,486,756 JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:904,129...908,130 JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936562:4,743,595...4,777,685 JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936651:1,952,594...2,291,143 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936475:6,321,725...6,689,410 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:50172|PMID:1554415) RGD
Ensembl
MGI
PMID:1554415 PMID:15025514 GO_REF:0000107 MGI:50172 RGD:2316914 NCBI chrNW_004936486:16,744,607...16,923,209 JBrowse link
DNA deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:5,580,855...5,586,170 JBrowse link
G Exosc4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,097,218...8,099,319 JBrowse link
G Exosc5 exosome component 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,790,283...3,799,602 JBrowse link
G Exosc6 exosome component 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,295,441...23,297,321 JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:30017583), (PMID:30392959) UniProt PMID:18603530 PMID:30017583 PMID:30392959 NCBI chrNW_004936488:6,459,195...6,486,756 JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:1,883,353...1,889,159 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:666,545...669,351 JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004939393:628...6,234 JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,759,040...18,769,815 JBrowse link
G Eomes eomesodermin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:6,321,725...6,689,410 JBrowse link
G LOC101960775 cell division cycle and apoptosis regulator protein 1 involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936521:9,573,918...9,624,469 JBrowse link
G Pax6 paired box 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Tdg thymine DNA glycosylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:10,476,472...10,506,144 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4822076|PMID:20639862) MGI
InterPro
UniProt
Ensembl
PMID:20639862 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 MGI:4822076 NCBI chrNW_004936752:440,137...577,339 JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4822076|PMID:20639862), (MGI:5525037|PMID:23690950) MGI
Ensembl
InterPro
UniProt
PMID:20639862 PMID:23690950 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 MGI:4822076 MGI:5525037 NCBI chrNW_004936556:292,551...391,644 JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6103984|PMID:28930672) UniProt
Ensembl
PMID:28930672 GO_REF:0000107 MGI:6103984 NCBI chrNW_004936594:1,771,141...1,775,593 JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6103984|PMID:28930672) Ensembl
UniProt
PMID:28930672 GO_REF:0000107 MGI:6103984 NCBI chrNW_004936508:5,229,734...5,267,094 JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:292,551...391,644 JBrowse link
DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:21682946 RGD:9588311 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chrNW_004936645:2,570,071...2,725,796 JBrowse link
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) UniProt PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Bend3 BEN domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:3,495,020...3,513,684 JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5522578|PMID:24105743) MGI
Ensembl
PMID:24105743 GO_REF:0000107 MGI:5522578 NCBI chrNW_004936520:5,707,542...5,716,966 JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5522578|PMID:24105743)
(MGI:2450195|PMID:12461525)
MGI
Ensembl
PMID:12461525 PMID:24105743 GO_REF:0000107 MGI:2450195 MGI:5522578 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3655888|PMID:16887828)
(MGI:6151717|PMID:27841881)
(MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467)
(MGI:2152690|PMID:11399088)
MGI
Ensembl
PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 GO_REF:0000107 MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864)
(MGI:6151717|PMID:27841881)
(MGI:3768461|PMID:17938196)
MGI
Ensembl
InterPro
PMID:11399089 PMID:11934864 PMID:17938196 PMID:27841881 GO_REF:0000002 GO_REF:0000107 MGI:2152692 MGI:2178074 MGI:3768461 MGI:6151717 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5320860|PMID:22133874)
(MGI:6151717|PMID:27841881)
(MGI:3623538|PMID:16543361)
(MGI:3768461|PMID:17938196)
MGI
InterPro
PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 GO_REF:0000002 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
InterPro
PMID:25503965 GO_REF:0000002 GO_REF:0000107 MGI:5694015 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:321,580...450,061 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,648,451...1,663,294 JBrowse link
G Eomes eomesodermin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5522578|PMID:24105743) MGI
Ensembl
PMID:24105743 GO_REF:0000107 MGI:5522578 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153312|PMID:11711429) MGI
Ensembl
PMID:11711429 GO_REF:0000107 MGI:2153312 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3625774|PMID:16618927) MGI
Ensembl
PMID:16618927 GO_REF:0000107 MGI:3625774 NCBI chrNW_004936542:3,480,071...3,566,823 JBrowse link
G Kmt2e lysine methyltransferase 2E (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:18,674,657...18,764,177 JBrowse link
G LOC101963659 SPOC domain-containing protein 1 involved_in ISO (MGI:6453929|PMID:32674113) UniProt PMID:32674113 MGI:6453929 NCBI chrNW_004936474:14,894,564...14,918,088 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO RGD PMID:29115507 RGD:25823175 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 acts_upstream_of_or_within ISO (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G LOC101978700 activating transcription factor 7 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936587:2,922,855...3,026,773 JBrowse link
G Mta2 metastasis associated 1 family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4888087|PMID:20720167) MGI
Ensembl
PMID:20720167 GO_REF:0000107 MGI:4888087 NCBI chrNW_004936581:654,927...662,805 JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO (MGI:5512657|PMID:24074862) UniProt PMID:24074862 MGI:5512657 NCBI chrNW_004936643:379,790...410,034 JBrowse link
G Pax6 paired box 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:2,139,201...2,183,850 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:668,290...727,197 JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within_positive_effect
involved_in
ISO
IEA
(MGI:6270117|PMID:29117290)
(MGI:6151717|PMID:27841881)
(MGI:49689|PMID:1606615)
MGI
Ensembl
PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(MGI:5014027|PMID:20385583)
MGI
Ensembl
PMID:10555141 PMID:20385583 PMID:27841881 GO_REF:0000107 MGI:1347183 MGI:5014027 MGI:6151717 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(PMID:18814855)
MGI
UniProt
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319411|PMID:22495301) MGI
Ensembl
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Zdbf2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chrNW_004936631:2,649,792...2,686,430 JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chrNW_004936723:1,063,969...1,069,986 JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936589:1,756,616...1,799,810 JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chrNW_004936530:312,630...335,929 JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISO (MGI:4443217|PMID:20439430) UniProt PMID:20439430 MGI:4443217 NCBI chrNW_004936480:12,027,117...12,078,716 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,638,189...2,646,589 JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4358629|PMID:19727073) MGI
Ensembl
PMID:19727073 GO_REF:0000107 MGI:4358629 NCBI chrNW_004936552:3,921,217...3,964,281 JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:18,903,153...18,928,195 JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694015|PMID:25503965) MGI
Ensembl
PMID:25503965 GO_REF:0000107 MGI:5694015 NCBI chrNW_004936645:2,570,071...2,725,796 JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) UniProt PMID:20534472 MGI:4457283 NCBI chrNW_004936629:631,368...693,598 JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,078,681...6,133,184 JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 involved_in ISO (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) UniProt PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chrNW_004936674:355,302...402,388 JBrowse link
G Pld6 phospholipase D family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:867,501...872,899 JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,632,022...18,667,515 JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:4,514,621...4,558,396 JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) UniProt PMID:24067652 MGI:5516419 NCBI chrNW_004936570:2,947,069...3,015,549 JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:9,418,512...9,485,388 JBrowse link
G Tdrd9 tudor domain containing 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:1,186,643...1,283,213 JBrowse link
G Tdrkh tudor and KH domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,968,001...1,982,073 JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,911,109...1,940,897 JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 NOT|involved_in ISO
IEA
(PMID:30392959), (PMID:31632689), (PMID:31636962) UniProt
Ensembl
PMID:30392959 PMID:31632689 PMID:31636962 GO_REF:0000107 NCBI chrNW_004936500:13,086,873...13,099,814 JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:49689|PMID:1606615) RGD
UniProt
Ensembl
MGI
PMID:1606615 PMID:22880885 GO_REF:0000107 GO_REF:0000117 MGI:49689 RGD:9588218 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO
IEA
RGD
UniProt
PMID:22880885 GO_REF:0000117 RGD:9588218 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318 JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:3856245 RGD:2301219 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3718157|PMID:17212651) MGI
Ensembl
PMID:17212651 GO_REF:0000107 MGI:3718157 NCBI chrNW_004936727:1,648,451...1,663,294 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3610843|PMID:16287714) MGI PMID:16287714 MGI:3610843 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
hypermethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:266,462...277,256 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004936536:6,730,070...6,893,818 JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,852,759...1,870,647 JBrowse link
hypomethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5607719|PMID:20961378) MGI
Ensembl
PMID:20961378 GO_REF:0000107 MGI:5607719 NCBI chrNW_004936474:22,035,059...22,077,846 JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046385|PMID:15087456) MGI
Ensembl
PMID:15087456 GO_REF:0000107 MGI:3046385 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319411|PMID:22495301) MGI
Ensembl
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chrNW_004937062:126,832...132,938 JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:3,480,071...3,566,823 JBrowse link
oxidative DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:904,129...908,130 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936752:440,137...577,339 JBrowse link
oxidative single-stranded DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936562:4,743,595...4,777,685 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936475:6,321,725...6,689,410 JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otud4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:3,911,904...3,950,675 JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936508:5,229,734...5,267,094 JBrowse link
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110 JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215 JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,649,808...7,732,731 JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:143,078...160,318 JBrowse link
G Mecp2 methyl-CpG binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of
involved_in
ISO
IEA
(PMID:23042785) ARUK-UCL
Ensembl
PMID:23042785 GO_REF:0000107 NCBI chrNW_004936533:5,411,949...5,459,693 JBrowse link
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A involved_in ISO (MGI:2389510|PMID:12368916) ComplexPortal PMID:12368916 MGI:2389510 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (MGI:5009779|PMID:20820192) BHF-UCL PMID:20820192 MGI:5009779 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:22880885 RGD:9588218 NCBI chrNW_004936727:1,648,451...1,663,294 JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,856,683...41,961,666 JBrowse link
G Kdm1b lysine demethylase 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:3,921,217...3,964,281 JBrowse link
G LOC101970296 RLF zinc finger acts_upstream_of_or_within ISO (MGI:5693990|PMID:25857663) MGI PMID:25857663 MGI:5693990 NCBI chrNW_004936474:21,943,329...22,014,738 JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:20735989 RGD:9588647 NCBI chrNW_004936497:12,848,918...12,868,504 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:20735989 RGD:9588647 NCBI chrNW_004936497:9,512,350...9,619,250 JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:20735989 RGD:9588647 NCBI chrNW_004936588:865,046...873,821 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:20735989 RGD:9588647 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5438906|PMID:22516971) MGI
Ensembl
PMID:22516971 GO_REF:0000107 MGI:5438906 NCBI chrNW_004936500:9,822,366...9,832,732 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO RGD PMID:23260200 RGD:10413908 NCBI chrNW_004936526:3,102,468...3,147,601 JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5506832|PMID:23670199) MGI
Ensembl
PMID:23670199 GO_REF:0000107 MGI:5506832 NCBI chrNW_004936496:14,789,443...14,820,967 JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:22041901 RGD:9491827 NCBI chrNW_004936722:1,379,515...1,388,538 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5607719|PMID:20961378) MGI
Ensembl
PMID:20961378 GO_REF:0000107 MGI:5607719 NCBI chrNW_004936474:22,035,059...22,077,846 JBrowse link
G Znf595 zinc finger protein 595 acts_upstream_of_or_within ISO (MGI:5442238|PMID:22801370) MGI PMID:22801370 MGI:5442238 NCBI chrNW_004938658:3,888...5,370 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14973
    metabolic process 9446
      organic substance metabolic process 9085
        macromolecule metabolic process 7753
          macromolecule modification 3392
            DNA modification 100
              DNA ADP-ribosylation 3
              DNA alkylation + 71
              DNA dealkylation + 24
              DNA deamination + 6
              DNA methylation or demethylation + 88
              DNA restriction-modification system 0
              base J metabolic process 0
              depurination 0
              depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 14973
    metabolic process 9446
      cellular metabolic process 7935
        cellular nitrogen compound metabolic process 5171
          nucleobase-containing compound metabolic process 4460
            nucleic acid metabolic process 4054
              DNA metabolic process 882
                DNA modification 100
                  DNA ADP-ribosylation 3
                  DNA alkylation + 71
                  DNA dealkylation + 24
                  DNA deamination + 6
                  DNA methylation or demethylation + 88
                  DNA restriction-modification system 0
                  base J metabolic process 0
                  depurination 0
                  depyrimidination 0
paths to the root