Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA modification
go back to main search page
Accession:GO:0006304 term browser browse the term
Definition:The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.



show annotations for term's descendants           Sort by:
 
DNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISO positive regulation of DNA adduct formation RGD
MGI
PMID:24025706 GO_REF:0000096 MGI:4417868 RGD:7829724 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490
JBrowse link
G Dntt deoxynucleotidyltransferase, terminal acts_upstream_of_or_within IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr19:41,017,701...41,047,964
Ensembl chr19:41,017,714...41,047,964
JBrowse link
G Gstt1 glutathione S-transferase, theta 1 involved_in ISO RGD
MGI
PMID:11453994 GO_REF:0000096 MGI:4417868 RGD:7794854 NCBI chr10:75,619,647...75,634,418
Ensembl chr10:75,619,647...75,634,418
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within IMP (MGI:5566725|PMID:24205360) MGI PMID:24205360 MGI:5566725 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802
JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within
involved_in
IDA
IBA
ISO
(MGI:5811689|PMID:27856912)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27856912 GO_REF:0000096 MGI:4834177 MGI:5811689 MGI:6201960 NCBI chr 2:153,491,332...153,529,650
Ensembl chr 2:153,491,370...153,529,650
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Stpg4 sperm tail PG rich repeat containing 4 acts_upstream_of_or_within IMP (MGI:5762940|PMID:23560077) MGI PMID:23560077 MGI:5762940 NCBI chr17:87,696,998...87,735,526
Ensembl chr17:87,696,999...87,735,169
JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 involved_in IMP (MGI:6103984|PMID:28930672) UniProt PMID:28930672 MGI:6103984 NCBI chr11:116,734,341...116,740,566
Ensembl chr11:116,734,104...116,745,089
JBrowse link
DNA ADP-ribosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase family, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:180,396,456...180,428,564
Ensembl chr 1:180,396,489...180,428,819
JBrowse link
G Parp2 poly (ADP-ribose) polymerase family, member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:51,045,347...51,058,758
Ensembl chr14:51,045,298...51,058,758
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:106,347,521...106,354,148
Ensembl chr 9:106,347,521...106,354,148
JBrowse link
DNA cytosine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in ISO RGD
MGI
PMID:12697753 GO_REF:0000096 MGI:4417868 RGD:1358271 NCBI chr 6:122,554,751...122,579,995
Ensembl chr 6:122,554,751...122,579,403
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:79,774,620...79,802,419
Ensembl chr15:79,775,860...79,800,107
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:59,796,837...59,835,433
Ensembl chr14:59,796,837...59,835,408
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:87,474,847...87,490,609
Ensembl chr12:87,472,610...87,490,787
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IMP
IBA
(MGI:3796299|PMID:18519673)
(MGI:6201960|PMID:21873635)
MGI
UniProt
GO_Central
PMID:18519673 PMID:21873635 GO_REF:0000096 MGI:3796299 MGI:4834177 MGI:6201960 NCBI chr 5:114,261,987...114,269,293
Ensembl chr 5:114,261,987...114,266,279
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:93,810,969...93,841,188
Ensembl chr 2:93,810,895...93,841,152
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:50,468,756...50,727,300
Ensembl chr10:50,468,765...50,727,581
JBrowse link
G Fto fat mass and obesity associated involved_in IDA
ISO
(MGI:3817348|PMID:18775698) BHF-UCL
MGI
PMID:18775698 GO_REF:0000096 MGI:3817348 MGI:4834177 NCBI chr 8:92,039,995...92,395,061
Ensembl chr 8:92,040,153...92,395,067
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within
involved_in
IDA
ISO
(MGI:50172|PMID:1554415) MGI
RGD
PMID:1554415 PMID:15025514 GO_REF:0000096 MGI:4417868 MGI:50172 RGD:2316914 NCBI chr 7:136,496,192...136,729,922
Ensembl chr 7:136,496,343...136,731,995
JBrowse link
DNA deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:45,316,613...45,320,616
Ensembl chr 4:45,316,613...45,342,732
JBrowse link
G Exosc4 exosome component 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:76,211,597...76,214,870
Ensembl chr15:76,211,597...76,214,877
JBrowse link
G Exosc5 exosome component 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:25,358,578...25,367,457
Ensembl chr 7:25,358,589...25,370,793
JBrowse link
G Exosc6 exosome component 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:111,782,971...111,784,296
Ensembl chr 8:111,782,971...111,784,296
JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO
IDA
(MGI:6316531|PMID:27027282) MGI
UniProt
PMID:27027282 GO_REF:0000096 MGI:4834177 MGI:6316531 NCBI chr12:87,474,847...87,490,609
Ensembl chr12:87,472,610...87,490,787
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in IDA (MGI:6323482|PMID:30982744) UniProt PMID:30982744 MGI:6323482 NCBI chr 5:136,164,999...136,170,654
Ensembl chr 5:136,165,000...136,170,469
JBrowse link
G Apex1 apurinic/apyrimidinic endonuclease 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:51,162,406...51,164,645
Ensembl chr14:51,162,425...51,164,596
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in IBA
IDA
(MGI:6201960|PMID:21873635)
(MGI:5285126|PMID:21496894)
GO_Central
UniProt
PMID:21496894 PMID:21873635 MGI:5285126 MGI:6201960 NCBI chr 6:122,554,751...122,579,995
Ensembl chr 6:122,554,751...122,579,403
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr17:48,726,259...48,739,756
Ensembl chr17:48,726,259...48,739,958
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:79,774,620...79,802,419
Ensembl chr15:79,775,860...79,800,107
JBrowse link
G Eomes eomesodermin involved_in IMP (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 9:118,307,254...118,315,200
Ensembl chr 9:118,307,280...118,315,200
JBrowse link
G Fto fat mass and obesity associated involved_in IDA
ISO
(MGI:3817348|PMID:18775698), (MGI:4430814|PMID:17991826) BHF-UCL
MGI
PMID:17991826 PMID:18775698 GO_REF:0000096 MGI:3817348 MGI:4430814 MGI:4834177 NCBI chr 8:92,039,995...92,395,061
Ensembl chr 8:92,040,153...92,395,067
JBrowse link
G Pax6 paired box 6 involved_in IMP (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709
JBrowse link
G Tdg thymine DNA glycosylase involved_in IDA
IMP
(MGI:5287540|PMID:21817016)
(MGI:5141157|PMID:21722948), (MGI:5487523|PMID:21278727)
UniProt PMID:21278727 PMID:21722948 PMID:21817016 MGI:5141157 MGI:5287540 MGI:5487523 NCBI chr10:82,465,649...82,486,633
Ensembl chr10:82,465,662...82,486,633
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
IMP
(MGI:4822076|PMID:20639862)
(MGI:6201960|PMID:21873635)
(MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894)
MGI
GO_Central
UniProt
PMID:19372391 PMID:20639862 PMID:21496894 PMID:21873635 GO_REF:0000096 MGI:3844762 MGI:4822076 MGI:4834177 MGI:5285126 MGI:6201960 NCBI chr10:62,640,349...62,723,242
Ensembl chr10:62,640,349...62,744,775
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in
acts_upstream_of_or_within
IBA
ISO
IDA
TAS
(MGI:6201960|PMID:21873635)
(MGI:4822076|PMID:20639862)
(MGI:5287327|PMID:21778364), (MGI:5287540|PMID:21817016)
GO_Central
MGI
UniProt
PMID:20639862 PMID:21778364 PMID:21817016 PMID:21873635 GO_REF:0000096 MGI:4822076 MGI:4834177 MGI:5287327 MGI:5287540 MGI:6201960 NCBI chr 3:133,169,438...133,250,882
Ensembl chr 3:133,169,440...133,250,900
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 acts_upstream_of_or_within
involved_in
IDA
IMP
IBA
(MGI:4822076|PMID:20639862), (MGI:5525037|PMID:23690950)
(MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207)
(MGI:6201960|PMID:21873635)
MGI
UniProt
GO_Central
PMID:20639862 PMID:21407207 PMID:21873635 PMID:21892189 PMID:22722204 More... MGI:4822076 MGI:5289702 MGI:5432962 MGI:5465527 MGI:5525037 MGI:6201960 NCBI chr 6:83,339,355...83,434,190
Ensembl chr 6:83,339,355...83,436,066
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 acts_upstream_of_or_within IMP (MGI:6103984|PMID:28930672) UniProt PMID:28930672 MGI:6103984 NCBI chr11:116,734,341...116,740,566
Ensembl chr11:116,734,104...116,745,089
JBrowse link
G Stpg4 sperm tail PG rich repeat containing 4 involved_in
acts_upstream_of_or_within
IMP
IBA
(MGI:5762940|PMID:23560077)
(MGI:6103984|PMID:28930672)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23560077 PMID:28930672 MGI:5762940 MGI:6103984 MGI:6201960 NCBI chr17:87,696,998...87,735,526
Ensembl chr17:87,696,999...87,735,169
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IMP (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) UniProt PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 6:83,339,355...83,434,190
Ensembl chr 6:83,339,355...83,436,066
JBrowse link
DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in ISO RGD
MGI
PMID:21682946 GO_REF:0000096 MGI:4417868 RGD:9588311 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Morc1 microrchidia 1 acts_upstream_of_or_within IMP (MGI:5694015|PMID:25503965) MGI PMID:25503965 MGI:5694015 NCBI chr16:48,251,600...48,451,268
Ensembl chr16:48,251,600...48,451,263
JBrowse link
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:136,495,787...136,587,848
NCBI chr 6:136,531,089...136,532,543
Ensembl chr 6:136,483,165...136,587,860
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IDA (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) UniProt PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr10:127,927,453...127,965,172
Ensembl chr10:127,927,446...127,965,172
JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:43,355,130...43,391,413
Ensembl chr10:43,354,827...43,391,392
JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene acts_upstream_of_or_within IMP (MGI:5522578|PMID:24105743) MGI PMID:24105743 MGI:5522578 NCBI chr 2:18,681,829...18,691,440
Ensembl chr 2:18,681,829...18,691,440
JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within IDA
IMP
(MGI:2450195|PMID:12461525)
(MGI:5522578|PMID:24105743)
MGI PMID:12461525 PMID:24105743 MGI:2450195 MGI:5522578 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO RGD PMID:29115507 RGD:25823175 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 acts_upstream_of_or_within IDA
IGI
IMP
(MGI:2152690|PMID:11399088)
(MGI:6151717|PMID:27841881)
(MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467)
(MGI:3655888|PMID:16887828)
MGI PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in
acts_upstream_of_or_within
ISO
IGI
IDA
(MGI:6151717|PMID:27841881)
(MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864)
(MGI:3768461|PMID:17938196)
MGI PMID:11399089 PMID:11934864 PMID:17938196 PMID:27841881 GO_REF:0000096 MGI:2152692 MGI:2178074 MGI:3768461 MGI:4834177 MGI:6151717 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IMP
IGI
(MGI:5320860|PMID:22133874)
(MGI:6151717|PMID:27841881)
(MGI:3768461|PMID:17938196)
(MGI:3623538|PMID:16543361)
MGI PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chr 2:153,491,332...153,529,650
Ensembl chr 2:153,491,370...153,529,650
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like acts_upstream_of_or_within IMP (MGI:5694015|PMID:25503965) MGI PMID:25503965 MGI:5694015 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Ehmt1 euchromatic histone methyltransferase 1 involved_in IDA
IBA
(MGI:3826717|PMID:18818694)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:18818694 PMID:21873635 MGI:3826717 MGI:6201960 NCBI chr 2:24,680,781...24,809,658
Ensembl chr 2:24,679,940...24,809,626
JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 involved_in IDA
IBA
(MGI:3826717|PMID:18818694)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:18818694 PMID:21873635 MGI:3826717 MGI:6201960 NCBI chr17:35,117,426...35,133,049
Ensembl chr17:35,117,445...35,133,028
JBrowse link
G Eomes eomesodermin involved_in IMP (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 9:118,307,254...118,315,200
Ensembl chr 9:118,307,280...118,315,200
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within IMP (MGI:5522578|PMID:24105743) MGI PMID:24105743 MGI:5522578 NCBI chr 6:47,507,208...47,572,309
Ensembl chr 6:47,507,073...47,572,275
JBrowse link
G Gnas GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537
JBrowse link
G Gnasas1 GNAS antisense RNA 1 acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,123,030...174,137,229
Ensembl chr 2:174,123,030...174,137,229
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:2153312|PMID:11711429)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11711429 PMID:21873635 MGI:2153312 MGI:6201960 NCBI chr19:38,913,282...38,958,914
Ensembl chr19:38,919,359...38,959,495
JBrowse link
G Hymai hydatidiform mole associated and imprinted transcript acts_upstream_of_or_within IMP (MGI:5438422|PMID:22723905) MGI PMID:22723905 MGI:5438422 NCBI chr10:12,966,589...12,971,644 JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A acts_upstream_of_or_within IMP (MGI:3625774|PMID:16618927) MGI PMID:16618927 MGI:3625774 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594
JBrowse link
G Kmt2e lysine (K)-specific methyltransferase 2E involved_in IMP (MGI:3834766|PMID:18854576) UniProt PMID:18854576 MGI:3834766 NCBI chr 5:23,638,034...23,709,233
Ensembl chr 5:23,639,439...23,709,233
JBrowse link
G Mbd4 methyl-CpG binding domain protein 4 acts_upstream_of_or_within TAS (MGI:1934698|PMID:11336497) MGI PMID:11336497 MGI:1934698 NCBI chr 6:115,817,658...115,830,361
Ensembl chr 6:115,817,658...115,830,332
JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within IDA
IMP
(MGI:5465388|PMID:23195472)
(MGI:4839866|PMID:20610486)
MGI PMID:20610486 PMID:23195472 MGI:4839866 MGI:5465388 NCBI chr12:109,506,879...109,538,163
Ensembl chr12:109,506,884...109,538,160
JBrowse link
G Mta2 metastasis-associated gene family, member 2 acts_upstream_of_or_within IMP (MGI:4888087|PMID:20720167) MGI PMID:20720167 MGI:4888087 NCBI chr19:8,919,284...8,929,664
Ensembl chr19:8,919,239...8,929,667
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IMP (MGI:5512657|PMID:24074862) UniProt PMID:24074862 MGI:5512657 NCBI chr13:68,708,899...68,730,288
Ensembl chr13:68,708,899...68,730,268
JBrowse link
G Pax6 paired box 6 involved_in IMP (MGI:6220563|PMID:30186101) MGI PMID:30186101 MGI:6220563 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709
JBrowse link
G Ppm1d protein phosphatase 1D magnesium-dependent, delta isoform involved_in IDA (MGI:5551345|PMID:24135283) UniProt PMID:24135283 MGI:5551345 NCBI chr11:85,202,080...85,237,897
Ensembl chr11:85,202,070...85,237,892
JBrowse link
G Spocd1 SPOC domain containing 1 involved_in IMP (MGI:6453929|PMID:32674113) UniProt PMID:32674113 MGI:6453929 NCBI chr 4:129,822,560...129,850,908
Ensembl chr 4:129,823,042...129,850,908
JBrowse link
G Tex15 testis expressed gene 15 involved_in IMP (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) UniProt PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr 8:34,006,712...34,082,531
Ensembl chr 8:34,006,766...34,075,610
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IMP
IGI
(MGI:49689|PMID:1606615)
(MGI:6151717|PMID:27841881)
(MGI:6270117|PMID:29117290)
MGI PMID:1606615 PMID:27841881 PMID:29117290 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:3045942|PMID:15215868)
(MGI:6151717|PMID:27841881)
(MGI:1347183|PMID:10555141)
(MGI:5014027|PMID:20385583)
UniProt
MGI
PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IGI
IEP
(MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(PMID:18814855)
MGI
UniProt
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr 2:153,491,332...153,529,650
Ensembl chr 2:153,491,370...153,529,650
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:12,758,079...12,764,959
Ensembl chr 7:12,733,041...12,764,962
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:6151717|PMID:27841881)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27841881 MGI:6151717 MGI:6201960 NCBI chr 1:63,239,517...63,353,735
Ensembl chr 1:63,312,424...63,353,735
JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
MGI
UniProt
PMID:18854139 PMID:33500348 GO_REF:0000096 MGI:3826319 MGI:4834177 MGI:6506156 NCBI chr17:37,307,060...37,326,196
Ensembl chr17:37,312,055...37,321,527
JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IMP (MGI:4356194|PMID:19730684) UniProt PMID:19730684 MGI:4356194 NCBI chr 6:18,050,963...18,109,060
Ensembl chr 6:18,050,963...18,109,060
JBrowse link
G Ctcfl CCCTC-binding factor (zinc finger protein)-like involved_in IDA (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chr 2:172,935,402...172,961,318
Ensembl chr 2:172,935,402...172,961,318
JBrowse link
G Ddx4 DEAD box helicase 4 involved_in IMP (MGI:4443217|PMID:20439430) UniProt PMID:20439430 MGI:4443217 NCBI chr13:112,734,867...112,790,342
Ensembl chr13:112,734,867...112,789,009
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in IMP (MGI:3045942|PMID:15215868) UniProt PMID:15215868 MGI:3045942 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like involved_in IMP (MGI:3054275|PMID:15318244) UniProt PMID:15318244 MGI:3054275 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Fkbp6 FK506 binding protein 6 involved_in IMP (MGI:5439219|PMID:22902560) UniProt PMID:22902560 MGI:5439219 NCBI chr 5:135,320,558...135,380,662
Ensembl chr 5:135,320,558...135,378,898
JBrowse link
G Kdm1b lysine (K)-specific demethylase 1B acts_upstream_of_or_within IMP (MGI:4358629|PMID:19727073) MGI PMID:19727073 MGI:4358629 NCBI chr13:47,196,849...47,238,755
Ensembl chr13:47,196,975...47,238,755
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IMP (MGI:4417983|PMID:20011505) UniProt PMID:20011505 MGI:4417983 NCBI chr 1:166,028,954...166,066,313
Ensembl chr 1:166,028,770...166,066,316
JBrowse link
G Morc1 microrchidia 1 acts_upstream_of_or_within IMP (MGI:5694015|PMID:25503965) MGI PMID:25503965 MGI:5694015 NCBI chr16:48,251,600...48,451,268
Ensembl chr16:48,251,600...48,451,263
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in IMP (MGI:4457283|PMID:20534472) UniProt PMID:20534472 MGI:4457283 NCBI chr15:88,867,094...88,939,355
Ensembl chr15:88,867,112...88,939,355
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in IMP (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) UniProt PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chr14:70,609,926...70,674,338
Ensembl chr14:70,609,926...70,666,832
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in IMP (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) UniProt PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chr 9:14,613,072...14,651,968
Ensembl chr 9:14,607,526...14,652,036
JBrowse link
G Pld6 phospholipase D family, member 6 involved_in IMP (MGI:4943610|PMID:21397847) UniProt PMID:21397847 MGI:4943610 NCBI chr11:59,674,719...59,678,483
Ensembl chr11:59,674,723...59,678,471
JBrowse link
G Prmt7 protein arginine N-methyltransferase 7 involved_in IDA (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chr 8:106,937,686...106,978,326
Ensembl chr 8:106,937,568...106,979,426
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IMP (MGI:4356231|PMID:19465913) UniProt PMID:19465913 MGI:4356231 NCBI chr19:56,814,603...56,858,444
Ensembl chr19:56,814,641...56,858,444
JBrowse link
G Tdrd12 tudor domain containing 12 involved_in IMP (MGI:5516419|PMID:24067652) UniProt PMID:24067652 MGI:5516419 NCBI chr 7:35,166,366...35,237,206
Ensembl chr 7:35,168,523...35,237,170
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IMP (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chr 1:156,082,866...156,131,874
Ensembl chr 1:156,082,866...156,131,234
JBrowse link
G Tdrd9 tudor domain containing 9 involved_in IMP (MGI:4418580|PMID:20059948) UniProt PMID:20059948 MGI:4418580 NCBI chr12:111,937,922...112,035,288
Ensembl chr12:111,937,993...112,035,288
JBrowse link
G Tdrkh tudor and KH domain containing protein involved_in IMP (MGI:5494327|PMID:23714778) UniProt PMID:23714778 MGI:5494327 NCBI chr 3:94,320,551...94,342,161
Ensembl chr 3:94,320,580...94,341,975
JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 involved_in IDA
IBA
ISO
(MGI:6323482|PMID:30982744)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:21873635 PMID:30982744 GO_REF:0000096 MGI:4834177 MGI:6201960 MGI:6323482 NCBI chr17:95,030,018...95,057,579
Ensembl chr17:95,030,018...95,057,447
JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 (putative) involved_in
NOT|involved_in
ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)
UniProt PMID:30017583 PMID:30392959 PMID:31632689 PMID:31636962 NCBI chr16:87,151,073...87,165,537
Ensembl chr16:87,151,073...87,165,630
JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:49689|PMID:1606615) MGI
RGD
PMID:1606615 PMID:22880885 GO_REF:0000096 MGI:4417868 MGI:49689 RGD:9588218 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in ISO
IBA
(MGI:6201960|PMID:21873635) RGD
GO_Central
MGI
PMID:21873635 PMID:22880885 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:9588218 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like involved_in IMP
IBA
(MGI:3054275|PMID:15318244)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:15318244 PMID:21873635 MGI:3054275 MGI:6201960 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in ISO RGD
MGI
PMID:3856245 GO_REF:0000096 MGI:4417868 RGD:2301219 NCBI chr 9:20,818,501...20,871,184
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 acts_upstream_of_or_within IMP (MGI:3718157|PMID:17212651) MGI PMID:17212651 MGI:3718157 NCBI chr17:35,117,426...35,133,049
Ensembl chr17:35,117,445...35,133,028
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (MGI:3610843|PMID:16287714) MGI PMID:16287714 MGI:3610843 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526
JBrowse link
hypermethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3A involved_in IDA (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr12:3,851,559...3,964,443
Ensembl chr12:3,856,007...3,964,443
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IMP (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 7:24,927,683...24,937,276
Ensembl chr 7:24,927,683...24,937,276
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in IMP (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr16:37,909,363...38,066,446
Ensembl chr16:37,909,363...38,066,446
JBrowse link
G Kcnq1ot1 KCNQ1 overlapping transcript 1 acts_upstream_of_or_within IMP (MGI:4830046|PMID:20573698) MGI PMID:20573698 MGI:4830046 NCBI chr 7:142,766,848...142,850,284
Ensembl chr 7:142,757,195...142,850,286
JBrowse link
G Spi1 spleen focus forming virus (SFFV) proviral integration oncogene involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:90,912,750...90,946,104
Ensembl chr 2:90,912,735...90,946,101
JBrowse link
hypomethylation of CpG island term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IDA (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 3:32,451,203...32,520,256
Ensembl chr 3:32,451,820...32,522,635
JBrowse link
G Zmpste24 zinc metallopeptidase, STE24 acts_upstream_of_or_within IMP (MGI:5607719|PMID:20961378) MGI PMID:20961378 MGI:5607719 NCBI chr 4:120,916,434...120,955,452
Ensembl chr 4:120,916,434...120,955,438
JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IMP
IBA
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:17143267 PMID:21407207 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 MGI:6201960 NCBI chr 6:122,603,383...122,607,230
Ensembl chr 6:122,603,369...122,607,231
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IDA
IMP
(MGI:3046385|PMID:15087456) MGI PMID:15087456 MGI:3046385 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:12,758,079...12,764,959
Ensembl chr 7:12,733,041...12,764,962
JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like involved_in IMP (MGI:5553039|PMID:24074865) UniProt PMID:24074865 MGI:5553039 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594
JBrowse link
oxidative DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:114,261,987...114,269,293
Ensembl chr 5:114,261,987...114,266,279
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:133,169,438...133,250,882
Ensembl chr 3:133,169,440...133,250,900
JBrowse link
oxidative single-stranded DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:87,474,847...87,490,609
Ensembl chr12:87,472,610...87,490,787
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:93,810,969...93,841,188
Ensembl chr 2:93,810,895...93,841,152
JBrowse link
G Fto fat mass and obesity associated involved_in IBA
ISO
IDA
(MGI:6201960|PMID:21873635)
(MGI:3817348|PMID:18775698)
GO_Central
MGI
BHF-UCL
PMID:18775698 PMID:21873635 GO_REF:0000096 MGI:3817348 MGI:4834177 MGI:6201960 NCBI chr 8:92,039,995...92,395,061
Ensembl chr 8:92,040,153...92,395,067
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in IC (MGI:5285126|PMID:21496894) ComplexPortal PMID:21496894 MGI:5285126 NCBI chr19:31,846,156...31,929,765
Ensembl chr19:31,846,164...31,926,395
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in IC (MGI:5285126|PMID:21496894) ComplexPortal PMID:21496894 MGI:5285126 NCBI chr 6:122,554,751...122,579,995
Ensembl chr 6:122,554,751...122,579,403
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in IC (MGI:5285126|PMID:21496894) ComplexPortal PMID:21496894 MGI:5285126 NCBI chr11:51,490,927...51,497,708
Ensembl chr11:51,490,927...51,497,674
JBrowse link
G Otud4 OTU domain containing 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:80,366,305...80,404,384
Ensembl chr 8:80,366,247...80,404,353
JBrowse link
G Stpg4 sperm tail PG rich repeat containing 4 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5762940|PMID:23560077)
GO_Central
UniProt
PMID:21873635 PMID:23560077 MGI:5762940 MGI:6201960 NCBI chr17:87,696,998...87,735,526
Ensembl chr17:87,696,999...87,735,169
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IC (MGI:5285126|PMID:21496894) ComplexPortal PMID:21496894 MGI:5285126 NCBI chr 9:88,331,417...88,364,645
Ensembl chr 9:88,329,062...88,364,627
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3045816|PMID:15078895) UniProt PMID:15078895 MGI:3045816 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:8,506,586...8,574,931
Ensembl chr16:8,507,459...8,610,172
JBrowse link
G Usp9x ubiquitin specific peptidase 9, X chromosome involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:12,937,221...13,039,567
Ensembl chr  X:12,937,737...13,039,567
JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like involved_in IMP (MGI:5553039|PMID:24074865) UniProt PMID:24074865 MGI:5553039 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,178,969
JBrowse link
G Myc myelocytomatosis oncogene involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:61,857,190...61,862,210
Ensembl chr15:61,857,240...61,862,223
JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IMP
IBA
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:17143267 PMID:21407207 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 MGI:6201960 NCBI chr 6:122,603,383...122,607,230
Ensembl chr 6:122,603,369...122,607,231
JBrowse link
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IDA (MGI:2389510|PMID:12368916) ComplexPortal PMID:12368916 MGI:2389510 NCBI chr10:127,927,453...127,965,172
Ensembl chr10:127,927,446...127,965,172
JBrowse link
G Brca1 breast cancer 1, early onset involved_in IMP (MGI:5009779|PMID:20820192) BHF-UCL PMID:20820192 MGI:5009779 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781
JBrowse link
G Dubr Dppa2 upstream binding RNA acts_upstream_of_or_within IMP (MGI:5617446|PMID:25253739) MGI PMID:25253739 MGI:5617446 NCBI chr16:50,547,114...50,553,136
Ensembl chr16:50,539,657...50,553,136
JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 involved_in ISO RGD
MGI
PMID:22880885 GO_REF:0000096 MGI:4417868 RGD:9588218 NCBI chr17:35,117,426...35,133,049
Ensembl chr17:35,117,445...35,133,028
JBrowse link
G Ftx Ftx transcript, Xist regulator (non-protein coding) acts_upstream_of_or_within IMP (MGI:4936795|PMID:21118898) MGI PMID:21118898 MGI:4936795 NCBI chr  X:102,604,516...102,667,360
Ensembl chr  X:102,604,513...102,667,396
JBrowse link
G Grhl2 grainyhead like transcription factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813
JBrowse link
G H19 H19, imprinted maternally expressed transcript acts_upstream_of_or_within IMP (MGI:1096753|PMID:9294195) MGI PMID:9294195 MGI:1096753 NCBI chr 7:142,129,267...142,131,883
Ensembl chr 7:142,129,266...142,131,880
JBrowse link
G Kdm1b lysine (K)-specific demethylase 1B involved_in IMP (MGI:4358629|PMID:19727073) UniProt PMID:19727073 MGI:4358629 NCBI chr13:47,196,849...47,238,755
Ensembl chr13:47,196,975...47,238,755
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:20735989 RGD:9588647 NCBI chr18:74,400,676...74,415,808
Ensembl chr18:74,400,676...74,415,803
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:20735989 RGD:9588647 NCBI chr18:70,701,298...70,761,769
Ensembl chr18:70,701,260...70,759,202
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:20735989 RGD:9588647 NCBI chr10:80,228,373...80,235,365
Ensembl chr10:80,228,373...80,235,384
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI
PMID:20735989 GO_REF:0000096 MGI:4417868 RGD:9588647 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,178,969
JBrowse link
G Mir29a microRNA 29a involved_in ISO (PMID:23857059) BHF-UCL PMID:23857059 NCBI chr 6:31,039,595...31,039,682
Ensembl chr 6:31,039,595...31,039,682
JBrowse link
G Mir29b-1 microRNA 29b-1 involved_in ISO (PMID:23857059) BHF-UCL PMID:23857059 NCBI chr 6:31,039,958...31,040,028
Ensembl chr 6:31,039,958...31,040,028
JBrowse link
G Mir29b-2 microRNA 29b-2 involved_in ISO (PMID:23857059) BHF-UCL PMID:23857059 NCBI chr 1:194,719,348...194,719,428
Ensembl chr 1:194,719,348...194,719,428
JBrowse link
G Mir29c microRNA 29c involved_in ISO (PMID:23857059) BHF-UCL PMID:23857059 NCBI chr 1:194,719,855...194,719,942
Ensembl chr 1:194,719,855...194,719,942
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within IMP (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chr16:90,516,200...90,524,259
Ensembl chr16:90,516,200...90,524,292
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:56,905,692...56,934,887
Ensembl chr14:56,905,705...56,934,887
JBrowse link
G Parp1 poly (ADP-ribose) polymerase family, member 1 involved_in ISO RGD
MGI
PMID:23260200 GO_REF:0000096 MGI:4417868 RGD:10413908 NCBI chr 1:180,396,456...180,428,564
Ensembl chr 1:180,396,489...180,428,819
JBrowse link
G Prdm14 PR domain containing 14 acts_upstream_of_or_within IMP (MGI:5506832|PMID:23670199) MGI PMID:23670199 MGI:5506832 NCBI chr 1:13,183,652...13,197,387
Ensembl chr 1:13,183,681...13,197,387
JBrowse link
G Prmt5 protein arginine N-methyltransferase 5 involved_in ISO RGD
MGI
PMID:22041901 GO_REF:0000096 MGI:4417868 RGD:9491827 NCBI chr14:54,744,639...54,754,927
Ensembl chr14:54,744,644...54,754,982
JBrowse link
G Rlf rearranged L-myc fusion sequence acts_upstream_of_or_within IMP (MGI:5693990|PMID:25857663) MGI PMID:25857663 MGI:5693990 NCBI chr 4:121,003,080...121,072,318
Ensembl chr 4:121,002,570...121,072,281
JBrowse link
G Rsl1 regulator of sex limited protein 1 acts_upstream_of_or_within IMP (MGI:5442238|PMID:22801370) MGI PMID:22801370 MGI:5442238 NCBI chr13:67,321,246...67,331,563
Ensembl chr13:67,321,246...67,332,108
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IDA (MGI:2389510|PMID:12368916) ComplexPortal PMID:12368916 MGI:2389510 NCBI chr 8:81,426,572...81,466,088
Ensembl chr 8:81,425,136...81,466,126
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within IMP (MGI:4939073|PMID:21295276) MGI PMID:21295276 MGI:4939073 NCBI chr10:62,640,349...62,723,242
Ensembl chr10:62,640,349...62,744,775
JBrowse link
G Zmpste24 zinc metallopeptidase, STE24 acts_upstream_of_or_within IMP (MGI:5607719|PMID:20961378) MGI PMID:20961378 MGI:5607719 NCBI chr 4:120,916,434...120,955,452
Ensembl chr 4:120,916,434...120,955,438
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28746
    metabolic process 11576
      organic substance metabolic process 11180
        macromolecule metabolic process 9564
          macromolecule modification 3780
            DNA modification 118
              DNA ADP-ribosylation 3
              DNA alkylation + 85
              DNA dealkylation + 29
              DNA deamination + 8
              DNA methylation or demethylation + 105
              DNA restriction-modification system 0
              base J metabolic process 0
              depurination 0
              depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 28746
    metabolic process 11576
      cellular metabolic process 9722
        cellular nitrogen compound metabolic process 6414
          nucleobase-containing compound metabolic process 5487
            nucleic acid metabolic process 4979
              DNA metabolic process 1061
                DNA modification 118
                  DNA ADP-ribosylation 3
                  DNA alkylation + 85
                  DNA dealkylation + 29
                  DNA deamination + 8
                  DNA methylation or demethylation + 105
                  DNA restriction-modification system 0
                  base J metabolic process 0
                  depurination 0
                  depyrimidination 0
paths to the root