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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA modification
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Accession:GO:0006304 term browser browse the term
Definition:The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.


show annotations for term's descendants           Sort by:
DNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IMP positive regulation of DNA adduct formation RGD PMID:24025706 RGD:7829724 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282 		JBrowse link
G Gstt1 glutathione S-transferase theta 1 IDA RGD PMID:11453994 RGD:7794854 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5566725|PMID:24205360) RGD PMID:24205360 MGI:5566725 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (PMID:25383530) RGD PMID:25383530 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:5811689|PMID:27856912)
PMID:21873635
(PMID:32083663)		 RGD PMID:27856912 PMID:32083663 PMID:21873635 MGI:5811689, RGD:13792537 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3c DNA methyltransferase 3C involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:142,178,533...142,210,954 JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISO
IEA
IBA		 (PMID:25383530), (PMID:32083663)
GO_REF:0000107
PMID:21873635		 RGD
Ensembl		 PMID:25383530 PMID:32083663 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:5762940 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
DNA ADP-ribosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
ISS		 (PMID:27471034)
GO_REF:0000024		 RGD
UniProt		 PMID:27471034 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 involved_in ISO (PMID:27471034) RGD PMID:27471034 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338 		JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 involved_in ISO (PMID:29361132) RGD PMID:29361132 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782 		JBrowse link
DNA cytosine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:12697753 RGD:1358271 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO
IBA		 (PMID:16571802), (PMID:21835787)
PMID:21873635		 RGD PMID:16571802 PMID:21835787 PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:33,726,590...33,755,611
Ensembl chr15:33,723,435...33,755,576 		JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IBA		 (PMID:18432238), (PMID:20714506)
PMID:21873635
(MGI:3796299|PMID:18519673)		 RGD PMID:18432238 PMID:18519673 PMID:20714506 PMID:21873635 MGI:3796299, RGD:13792537 NCBI chr12:42,494,187...42,500,929
Ensembl chr12:42,496,300...42,500,914 		JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:16858410), (PMID:20714506), (PMID:22055184)		 UniProt
InterPro
RGD		 PMID:16858410 PMID:20714506 PMID:22055184 GO_REF:0000002 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000 		JBrowse link
G Ascc1 activating signal cointegrator 1 complex subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:27,941,053...28,031,272
Ensembl chr20:27,941,283...28,031,272 		JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO
ISS		 (PMID:22055184)
GO_REF:0000024		 RGD
UniProt		 PMID:22055184 GO_REF:0000024 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)		 UniProt
Ensembl
RGD		 PMID:18775698 PMID:20376003 GO_REF:0000024 GO_REF:0000107 MGI:3817348 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within IDA
ISO		 (MGI:50172|PMID:1554415) RGD PMID:1554415 PMID:15025514 MGI:50172, RGD:2316914 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756 		JBrowse link
DNA deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc6 exosome component 6 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515 		JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO
IBA		 (PMID:21496894)
PMID:21873635		 RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:30017583), (PMID:30392959)
(MGI:6316531|PMID:27027282)		 RGD PMID:18603530 PMID:27027282 PMID:30017583 PMID:30392959 MGI:6316531 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21496894)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21496894 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IBA
ISS
ISO		 PMID:21873635
GO_REF:0000024
(MGI:5285126|PMID:21496894)		 UniProt
RGD		 PMID:21496894 PMID:21873635 GO_REF:0000024 MGI:5285126, RGD:13792537 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in ISO
IBA		 (PMID:21496894)
PMID:21873635		 RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:18775698)
(MGI:3817348|PMID:18775698), (MGI:4430814|PMID:17991826)		 RGD PMID:17991826 PMID:18775698 MGI:3817348 MGI:4430814 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (MGI:6220563|PMID:30186101)
GO_REF:0000107		 RGD
Ensembl		 PMID:30186101 GO_REF:0000107 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:21496894)
(MGI:4822076|PMID:20639862)
(MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894)
PMID:21873635		 RGD PMID:19372391 PMID:20639862 PMID:21496894 PMID:21873635 MGI:3844762 MGI:4822076 MGI:5285126, RGD:13792537 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:4822076|PMID:20639862)
(PMID:24315485)		 RGD PMID:20639862 PMID:24315485 PMID:21873635 MGI:4822076, RGD:13792537 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207)
PMID:21873635
(MGI:5525037|PMID:23690950)
(MGI:4822076|PMID:20639862)		 RGD PMID:20639862 PMID:21407207 PMID:21892189 PMID:22722204 PMID:23690950 More... MGI:4822076 MGI:5289702 MGI:5432962 MGI:5465527 MGI:5525037, RGD:13792537 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193 		JBrowse link
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A acts_upstream_of_or_within ISO MGI:2137512 (MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:3686546 NCBI chr 6:89,522,463...89,593,868
Ensembl chr 6:89,522,442...89,593,510 		JBrowse link
G Arid4b AT-rich interaction domain 4B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2444354 (MGI:3686546|PMID:17043311)		 Ensembl
RGD		 PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chr17:51,138,419...51,262,956
Ensembl chr17:51,138,535...51,262,906 		JBrowse link
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650 		JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2450195|PMID:12461525), (MGI:5522578|PMID:24105743)
GO_REF:0000107		 RGD
Ensembl		 PMID:12461525 PMID:24105743 GO_REF:0000107 MGI:2450195 MGI:5522578 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within ISO MGI:1261819|MGI:1261827|MGI:1930971 (MGI:2152690|PMID:11399088), (MGI:3655888|PMID:16887828), (MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467), (MGI:6151717|PMID:27841881) RGD PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISS
ISO		 PMID:12138111
MGI:1261819|MGI:94912 (MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864), (MGI:3768461|PMID:17938196), (MGI:6151717|PMID:27841881)
(PMID:12138111), (PMID:19786833), (PMID:23042785), (PMID:30478443)		 RGD PMID:11399089 PMID:11934864 PMID:12138111 PMID:17938196 PMID:19786833 More... MGI:2152692 MGI:2178074 MGI:3768461 MGI:6151717, RGD:8554662 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:1859287|MGI:3047833|MGI:94912 (MGI:3623538|PMID:16543361), (MGI:3768461|PMID:17938196), (MGI:5320860|PMID:22133874), (MGI:6151717|PMID:27841881) RGD PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000002
MGI:2155766 (MGI:5694015|PMID:25503965)		 InterPro
RGD		 PMID:25503965 GO_REF:0000002 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in IBA
ISO		 PMID:21873635
(MGI:3826717|PMID:18818694)		 RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in IBA
ISO		 PMID:21873635
(MGI:3826717|PMID:18818694)		 RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:4459474 (MGI:4454202|PMID:20427744)
GO_REF:0000107		 RGD
Ensembl		 PMID:20427744 GO_REF:0000107 MGI:4454202 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hells helicase, lymphoid specific involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2178586 (MGI:2153312|PMID:11711429)		 RGD PMID:11711429 PMID:21873635 MGI:2153312, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:3625774 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Kmt2e lysine methyltransferase 2E involved_in ISO (MGI:3834766|PMID:18854576) RGD PMID:18854576 MGI:3834766 NCBI chr 4:11,657,811...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within ISO MGI:4840060 (MGI:4839866|PMID:20610486), (MGI:5465388|PMID:23195472) RGD PMID:20610486 PMID:23195472 MGI:4839866 MGI:5465388 NCBI chr 6:128,491,808...128,524,010 JBrowse link
G Mettl7a methyltransferase like 7A involved_in ISO (PMID:34226523) RGD PMID:34226523 NCBI chr 7:131,452,099...131,460,154
Ensembl chr 7:131,451,641...131,460,154 		JBrowse link
G Mta2 metastasis associated 1 family, member 2 acts_upstream_of_or_within ISO (MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:4888087 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IC PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
ISO		 GO_REF:0000024
(MGI:5512657|PMID:24074862)		 UniProt
RGD		 PMID:24074862 GO_REF:0000024 MGI:5512657 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
G Pax6 paired box 6 involved_in IEA
ISO		 GO_REF:0000107
(MGI:6220563|PMID:30186101)		 Ensembl
RGD		 PMID:30186101 GO_REF:0000107 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607 		JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6447460|PMID:32719317) RGD PMID:32719317 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO
IBA		 (PMID:32183942)
PMID:21873635
(MGI:6323482|PMID:30982744)		 RGD PMID:30982744 PMID:32183942 PMID:21873635 MGI:6323482, RGD:13792537 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in
NOT|involved_in		 ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)		 RGD PMID:30017583 PMID:30392959 PMID:31632689 PMID:31636962 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248 		JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within IDA
ISO		 MGI:1857157 (MGI:49689|PMID:1606615) RGD PMID:1606615 PMID:22880885 MGI:49689, RGD:9588218 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:22880885 PMID:21873635 RGD:9588218, RGD:13792537 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO		 GO_REF:0000024
(MGI:3054275|PMID:15318244)		 UniProt
RGD		 PMID:15318244 GO_REF:0000024 MGI:3054275 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:3856245 PMID:21873635 RGD:2301219, RGD:13792537 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:3718157|PMID:17212651) RGD PMID:17212651 MGI:3718157 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207)
GO_REF:0000024		 RGD
UniProt		 PMID:21407207 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5465527, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G LOC120096627 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859 		JBrowse link
G LOC120096971 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
negative regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in ISO
IEA
ISS		 (MGI:5553039|PMID:24074865)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24074865 GO_REF:0000024 GO_REF:0000107 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
oxidative single-stranded DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IEA
ISS		 (PMID:16858410), (PMID:22055184)
GO_REF:0000002
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:16858410 PMID:22055184 GO_REF:0000002 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:18775698 PMID:20376003 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3817348, RGD:13792537 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otud4 OTU deubiquitinase 4 involved_in ISO (PMID:25944111) RGD PMID:25944111 NCBI chr19:28,236,713...28,279,815
Ensembl chr19:28,236,713...28,279,815 		JBrowse link
G Stpg1 sperm-tail PG-rich repeat containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:147,717,084...147,769,792
Ensembl chr 5:147,726,646...147,769,788 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5762940|PMID:23560077)		 RGD PMID:23560077 PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (MGI:3045816|PMID:15078895) RGD PMID:15078895 MGI:3045816 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25944111)		 UniProt
Ensembl
RGD		 PMID:25944111 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,033
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked involved_in ISO (PMID:25944111) RGD PMID:25944111 NCBI chr  X:9,588,825...9,726,993
Ensembl chr  X:9,588,825...9,696,711 		JBrowse link
positive regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5553039|PMID:24074865)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24074865 GO_REF:0000024 GO_REF:0000107 MGI:5553039 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO (PMID:23960241) RGD PMID:23960241 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19786833) RGD PMID:19786833 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of
involved_in		 ISO
IEA		 (PMID:23042785)
GO_REF:0000107		 RGD
Ensembl		 PMID:23042785 GO_REF:0000107 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
regulation of DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IEA
ISO		 GO_REF:0000107
(MGI:5009779|PMID:20820192)		 Ensembl
RGD		 PMID:20820192 GO_REF:0000107 MGI:5009779 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 IDA RGD PMID:22880885 RGD:9588218 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (MGI:4936795|PMID:21118898) RGD PMID:21118898 MGI:4936795 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Grhl2 grainyhead-like transcription factor 2 involved_in ISO (PMID:20938050), (PMID:23254293) RGD PMID:20938050 PMID:23254293 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G H19 H19 imprinted maternally expressed transcript acts_upstream_of_or_within ISO (MGI:1096753|PMID:9294195) RGD PMID:9294195 MGI:1096753 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 IEP RGD PMID:20735989 RGD:9588647 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 IEP RGD PMID:20735989 RGD:9588647 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP
IMP		 RGD PMID:20735989 PMID:20735989 RGD:9588647, RGD:9588647 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mir29a microRNA 29a involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr 4:59,650,608...59,650,695 JBrowse link
G Mir29b1 microRNA 29b-1 involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr 4:59,650,987...59,651,067
Ensembl chr 4:59,650,986...59,651,067 		JBrowse link
G Mir29b2 microRNA 29b-2 involved_in ISO (PMID:23857059) RGD PMID:23857059 NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456 		JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within ISO MGI:5441069 (MGI:5438906|PMID:22516971) RGD PMID:22516971 MGI:5438906 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO
IBA
ISS		 (PMID:20871592)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:20871592 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IMP RGD PMID:23260200 RGD:10413908 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO MGI:4441771 (MGI:5506832|PMID:23670199) RGD PMID:23670199 MGI:5506832 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 IMP RGD PMID:22041901 RGD:9491827 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Rlf RLF zinc finger acts_upstream_of_or_within ISO MGI:5515366 (MGI:5693990|PMID:25857663) RGD PMID:25857663 MGI:5693990 NCBI chr 5:134,711,612...134,767,274
Ensembl chr 5:134,711,619...134,767,257 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:2389510|PMID:12368916) RGD PMID:12368916 MGI:2389510 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:4939073|PMID:21295276) RGD PMID:21295276 MGI:4939073 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:5607719 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      organic substance metabolic process 11623
        macromolecule metabolic process 9355
          macromolecule modification 3692
            DNA modification 92
              DNA ADP-ribosylation 3
              DNA alkylation + 55
              DNA dealkylation + 30
              DNA deamination + 8
              DNA restriction-modification system 0
              base J metabolic process 0
              depurination 0
              depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      cellular metabolic process 7496
        cellular aromatic compound metabolic process 3078
          nucleobase-containing compound metabolic process 2826
            nucleic acid metabolic process 2315
              DNA metabolic process 1001
                DNA modification 92
                  DNA ADP-ribosylation 3
                  DNA alkylation + 55
                  DNA dealkylation + 30
                  DNA deamination + 8
                  DNA restriction-modification system 0
                  base J metabolic process 0
                  depurination 0
                  depyrimidination 0
paths to the root