ONTOLOGY REPORT - ANNOTATIONS
Term: double-strand break repair via nonhomologous end joining
Accession: GO:0006303
browse the term
Definition: The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
Synonyms: exact_synonym: NHEJ
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APLF
aprataxin and PNKP like factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2A:68,509,314...68,629,192
Ensembl chr2A:69,632,459...69,744,611
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CYREN
cell cycle regulator of NHEJ
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 7:127,130,587...127,148,824
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DCLRE1A
DNA cross-link repair 1A
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr10:110,433,735...110,453,565
Ensembl chr10:113,866,759...113,886,141
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DCLRE1B
DNA cross-link repair 1B
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 1:88,643,664...88,651,962
Ensembl chr 1:123,692,915...123,701,403
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DCLRE1C
DNA cross-link repair 1C
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr10:14,901,335...14,956,947
Ensembl chr10:15,236,558...15,269,043
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DNTT
DNA nucleotidylexotransferase
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr10:92,916,783...92,958,216
Ensembl chr10:96,423,819...96,457,742
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ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430
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ERCC4
ERCC excision repair 4, endonuclease catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
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HMGB1
high mobility group box 1
involved_in
ISO
(PMID:9600082)
GO_Central
PMID:9600082
NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
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HMGB2
high mobility group box 2
involved_in
ISO
(PMID:9600082)
GO_Central
PMID:9600082
NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
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IFFO1
intermediate filament family orphan 1
involved_in
ISO
(PMID:31548606)
UniProt
PMID:31548606
NCBI chr12:6,670,415...6,686,972
Ensembl chr12:6,588,975...6,605,262
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KDM2A
lysine demethylase 2A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
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LIG1
DNA ligase 1
acts_upstream_of_or_within
ISO
(PMID:21655080)
MGI
PMID:21655080
NCBI chr19:45,056,737...45,110,867
Ensembl chr19:53,706,778...53,761,088
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LIG3
DNA ligase 3
acts_upstream_of_or_within
ISO
(PMID:21655080)
MGI
PMID:21655080
NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16777961) (PMID:10823907)
Ensembl MGI TreeGrafter
PMID:10823907 PMID:16777961
GO_REF:0000107 GO_REF:0000118
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
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LOC100970335
X-ray repair cross-complementing protein 6-like
involved_in
IEA
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
NCBI chr X:139,876,341...139,878,314
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LOC100986203
histone-lysine N-methyltransferase SETMAR
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15084308)
Ensembl MGI
PMID:15084308
GO_REF:0000107
NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
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MRE11
MRE11 homolog, double strand break repair nuclease
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
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NHEJ1
non-homologous end joining factor 1
involved_in
IEA
Ensembl TreeGrafter UniProt
GO_REF:0000107 GO_REF:0000117 GO_REF:0000118
NCBI chr2B:106,326,596...106,419,928
Ensembl chr2B:224,926,183...225,008,788
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NSMCE2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase
NOT|involved_in
ISO
(PMID:16810316)
UniProt
PMID:16810316
NCBI chr 8:121,777,986...122,052,094
Ensembl chr 8:124,529,268...124,803,114
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PAXX
PAXX non-homologous end joining factor
involved_in
IEA
InterPro TreeGrafter Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118
NCBI chr 9:108,052,793...108,055,298
Ensembl chr 9:137,021,230...137,022,805
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PNKP
polynucleotide kinase 3'-phosphatase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:46,874,216...46,880,954
Ensembl chr19:55,790,048...55,796,762
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POLA1
DNA polymerase alpha 1, catalytic subunit
involved_in
ISO
(PMID:11470886)
UniProt
PMID:11470886
NCBI chr X:17,290,805...17,592,163
Ensembl chr X:24,657,878...24,960,231
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POLB
DNA polymerase beta
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 8:41,582,370...41,615,950
Ensembl chr 8:39,026,991...39,060,464
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POLL
DNA polymerase lambda
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr10:98,181,049...98,190,463
Ensembl chr10:101,653,978...101,663,360
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POLM
DNA polymerase mu
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 7:44,785,797...44,796,624
Ensembl chr 7:44,852,594...44,862,816
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PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
Ensembl MGI InterPro
PMID:23836881
GO_REF:0000002 GO_REF:0000107
NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
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PRPF19
pre-mRNA processing factor 19
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:56,153,965...56,169,821
Ensembl chr11:59,595,120...59,607,828
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PSMD14
proteasome 26S subunit, non-ATPase 14
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:48,602,395...48,705,229
Ensembl chr2B:165,972,229...166,074,879
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RNF168
ring finger protein 168
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
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RNF8
ring finger protein 8
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
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SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258
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SMC5
structural maintenance of chromosomes 5
NOT|involved_in
ISO
(PMID:16810316)
UniProt
PMID:16810316
NCBI chr 9:54,446,863...54,543,249
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TP53BP1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
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XRCC1
X-ray repair cross complementing 1
involved_in
IEA
Ensembl InterPro
GO_REF:0000002 GO_REF:0000107
NCBI chr19:40,485,052...40,522,188
Ensembl chr19:49,094,014...49,125,520
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XRCC4
X-ray repair cross complementing 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17713479)
Ensembl MGI TreeGrafter UniProt
PMID:17713479
GO_REF:0000107 GO_REF:0000117 GO_REF:0000118
NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490
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XRCC5
X-ray repair cross complementing 5
involved_in
IEA
InterPro TreeGrafter Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118
NCBI chr2B:103,371,459...103,468,419
Ensembl chr2B:221,972,742...222,071,235
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XRCC6
X-ray repair cross complementing 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11751629)
Ensembl MGI TreeGrafter InterPro
PMID:11751629
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118
NCBI chr22:22,516,281...22,557,379
Ensembl chr22:40,603,038...40,643,314
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HELQ
helicase, POLQ like
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:40,740,392...40,788,907
Ensembl chr 4:46,586,882...46,635,108
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HMCES
5-hydroxymethylcytosine binding, ES cell specific
involved_in
ISO
(MGI:6393148|PMID:31806351)
UniProt
PMID:31806351
MGI:6393148
NCBI chr 3:126,339,758...126,367,166
Ensembl chr 3:133,694,676...133,721,519
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LIG3
DNA ligase 3
involved_in
ISO
(PMID:24837021) (MGI:5014103|PMID:21655080)
BHF-UCL
PMID:21655080 PMID:24837021
MGI:5014103
NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220
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NBN
nibrin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:86,622,797...86,674,202
Ensembl chr 8:88,575,198...88,626,307
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PLK1
polo like kinase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:14,420,972...14,432,821
Ensembl chr16:23,928,773...23,940,779
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POLN
DNA polymerase nu
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 4:2,214,154...2,385,094
Ensembl chr 4:2,122,309...2,292,431
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POLQ
DNA polymerase theta
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr 3:118,535,968...118,648,275
Ensembl chr 3:125,446,829...125,559,283
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RHNO1
RAD9-HUS1-RAD1 interacting nuclear orphan 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:2,999,089...3,011,911
Ensembl chr12:2,930,957...2,943,419
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TOPBP1
DNA topoisomerase II binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:130,667,998...130,729,569
Ensembl chr 3:138,143,893...138,203,363
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ERCC6
ERCC excision repair 6, chromatin remodeling factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:44,703,720...44,784,948
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ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496
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LIG4
DNA ligase 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
G
RNF168
ring finger protein 168
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
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TOPBP1
DNA topoisomerase II binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:130,667,998...130,729,569
Ensembl chr 3:138,143,893...138,203,363
G
TP53BP1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
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UVRAG
UV radiation resistance associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:70,870,341...71,197,559
Ensembl chr11:74,172,919...74,496,046
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XRCC6
X-ray repair cross complementing 6
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:22,516,281...22,557,379
Ensembl chr22:40,603,038...40,643,314
G
ZBTB7A
zinc finger and BTB domain containing 7A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:3,066,554...3,090,285
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AUNIP
aurora kinase A and ninein interacting protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:25,090,690...25,118,062
Ensembl chr 1:26,157,953...26,185,578
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CYREN
cell cycle regulator of NHEJ
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:127,130,587...127,148,824
G
ERCC6
ERCC excision repair 6, chromatin remodeling factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:44,703,720...44,784,948
G
HMGA2
high mobility group AT-hook 2
involved_in
ISO
(PMID:19549901)
UniProt
PMID:19549901
NCBI chr12:22,954,946...23,096,623
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HSF1
heat shock transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:141,055,310...141,078,360
Ensembl chr 8:144,062,137...144,067,866
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MRE11
MRE11 homolog, double strand break repair nuclease
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
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NUDT16L1
nudix hydrolase 16 like 1
involved_in
ISO
(PMID:28241136)
UniProt
PMID:28241136
NCBI chr16:3,615,841...3,620,526
Ensembl chr16:4,785,358...4,786,775
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FH
fumarate hydratase
involved_in
ISO
(PMID:26237645)
UniProt
PMID:26237645
NCBI chr 1:217,059,847...217,081,795
Ensembl chr 1:222,041,142...222,064,212
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KDM4D
lysine demethylase 4D
acts_upstream_of_or_within
ISO
(PMID:24550317)
MGI
PMID:24550317
NCBI chr11:89,987,537...90,013,421
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KMT5B
lysine methyltransferase 5B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:63,239,796...63,297,113
Ensembl chr11:66,549,230...66,581,475
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KMT5C
lysine methyltransferase 5C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:52,381,963...52,390,507
Ensembl chr19:61,073,396...61,078,717
G
LOC100986203
histone-lysine N-methyltransferase SETMAR
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791
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MAD2L2
mitotic arrest deficient 2 like 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:10,436,532...10,454,023
Ensembl chr 1:11,654,963...11,661,526
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PARP3
poly(ADP-ribose) polymerase family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:51,883,695...51,890,266
Ensembl chr 3:53,112,494...53,119,053
G
PNKP
polynucleotide kinase 3'-phosphatase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:46,874,216...46,880,954
Ensembl chr19:55,790,048...55,796,762
G
PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
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RIF1
replication timing regulatory factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
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SHLD1
shieldin complex subunit 1
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr20:5,753,262...5,858,728
Ensembl chr20:5,537,488...5,642,107
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SHLD2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893), (PMID:29789392)
UniProt
PMID:29656893 PMID:29789392
NCBI chr10:83,639,020...83,643,420
G
SHLD3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
UniProt
PMID:29656893
NCBI chr 5:48,376,338...48,382,052
G
SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
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TOP2B
DNA topoisomerase II beta
ISO
RGD
PMID:22019940
RGD:13432143
NCBI chr 3:25,499,239...25,566,029
Ensembl chr 3:25,828,879...25,896,912
G
WRAP53
WD repeat containing antisense to TP53
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
G
ACTR2
actin related protein 2
NOT|involved_in
ISO
(PMID:29925947)
UniProt
PMID:29925947
NCBI chr2A:65,289,675...65,333,219
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DEK
DEK proto-oncogene
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21653549)
Ensembl MGI
PMID:21653549
GO_REF:0000107
NCBI chr 6:18,071,928...18,112,245
Ensembl chr 6:18,427,844...18,465,606
G
MRNIP
MRN complex interacting protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:174,989,967...175,020,550
Ensembl chr 5:182,299,016...182,340,632
G
NSD2
nuclear receptor binding SET domain protein 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23241889)
Ensembl MGI
PMID:23241889
GO_REF:0000107
NCBI chr 4:2,009,276...2,119,182
Ensembl chr 4:1,945,307...2,027,425
G
POT1
protection of telomeres 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558
G
SHLD1
shieldin complex subunit 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr20:5,753,262...5,858,728
Ensembl chr20:5,537,488...5,642,107
G
USP51
ubiquitin specific peptidase 51
involved_in
ISO
(PMID:27083998)
UniProt
PMID:27083998
NCBI chr X:47,747,547...47,753,119
G
WAS
WASP actin nucleation promoting factor
NOT|involved_in
ISO
(PMID:29925947)
UniProt
PMID:29925947
NCBI chr X:40,982,132...40,989,767
Ensembl chr X:48,842,765...48,850,380
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