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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-excision repair, DNA gap filling
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Accession:GO:0006297 term browser browse the term
Definition:Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes.


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nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 involved_in IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:17290226)
RGD PMID:12517771 PMID:17290226, PMID:21873635 RGD:13792537 NCBI chr16:85,331,771...85,339,496
Ensembl chr16:85,331,866...85,337,769
JBrowse link
G Polb DNA polymerase beta NOT|involved_in ISO (PMID:20227374) RGD PMID:20227374 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
IBA
(PMID:20227374)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:20227374, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO
IBA
(PMID:20227374)
PMID:21873635
RGD PMID:20227374, PMID:21873635 RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA
(PMID:20227374)
PMID:21873635
RGD PMID:20227374, PMID:21873635 RGD:13792537 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polk DNA polymerase kappa involved_in ISO (PMID:20227374) RGD PMID:20227374 NCBI chr 2:27,305,718...27,364,906
Ensembl chr 2:27,305,728...27,364,906
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular macromolecule metabolic process 8243
          DNA metabolic process 882
            nucleotide-excision repair, DNA gap filling 6
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular metabolic process 10755
        cellular nitrogen compound metabolic process 6601
          nucleobase-containing compound metabolic process 5420
            nucleic acid metabolic process 4930
              DNA metabolic process 882
                DNA repair 488
                  nucleotide-excision repair 57
                    nucleotide-excision repair, DNA gap filling 6
paths to the root