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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-excision repair, DNA incision, 5'-to lesion
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Accession:GO:0006296 term browser browse the term
Definition:The endonucleolytic cleavage of the damaged strand of DNA 5' to the site of damage. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound. The incision follows the incision formed 3' to the site of damage.



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nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC117889.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO
IBA
(PMID:7657672)
PMID:21873635
RGD PMID:7657672 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO
IBA
(PMID:11790111), (PMID:14728600)
PMID:21873635
RGD PMID:11790111 PMID:14728600 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(MGI:1289919|PMID:9743625)
(PMID:8990169)
RGD PMID:8990169 PMID:9743625 PMID:21873635 MGI:1289919, RGD:13792537 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      primary metabolic process 10535
        nucleobase-containing compound metabolic process 5410
          nucleic acid metabolic process 4926
            nucleic acid phosphodiester bond hydrolysis 250
              nucleotide-excision repair, DNA incision 10
                nucleotide-excision repair, DNA incision, 5'-to lesion 4
Path 2
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      organic substance metabolic process 11355
        organic cyclic compound metabolic process 5874
          nucleobase-containing compound metabolic process 5410
            nucleic acid metabolic process 4926
              DNA metabolic process 913
                DNA repair 512
                  nucleotide-excision repair 57
                    nucleotide-excision repair, DNA incision 10
                      nucleotide-excision repair, DNA incision, 5'-to lesion 4
paths to the root