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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine dimer repair
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Accession:GO:0006290 term browser browse the term
Definition:The repair of UV-induced T-T, C-T and C-C dimers.


show annotations for term's descendants           Sort by:
pyrimidine dimer repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddb2 damage specific DNA binding protein 2 acts_upstream_of_or_within ISO MGI:3511965 (PMID:15558025) RGD PMID:15558025 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:9150142) RGD PMID:9150142 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Polb DNA polymerase beta IDA RGD PMID:12388548 RGD:633643 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Polh DNA polymerase eta acts_upstream_of_or_within ISO (PMID:10871396) RGD PMID:10871396 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cry2 cryptochrome circadian regulator 2 NOT|involved_in ISO (PMID:12627958) RGD PMID:12627958 NCBI chr 3:78,374,995...78,405,001
Ensembl chr 3:78,374,995...78,404,965 		JBrowse link
pyrimidine dimer repair by nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (PMID:10454634) RGD PMID:10454634 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (PMID:12660172) RGD PMID:12660172 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (PMID:21149730)
GO_REF:0000107
(MGI:5298332|PMID:21149730)		 RGD
Ensembl		 PMID:21149730 GO_REF:0000107 MGI:5298332 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1931883 (PMID:17049932) RGD PMID:17049932 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular response to stimulus 9023
        cellular response to stress 2047
          DNA damage response 880
            DNA repair 559
              pyrimidine dimer repair 9
                photoreactive repair 1
                pyrimidine dimer repair by nucleotide-excision repair 4
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      cellular metabolic process 10279
        cellular aromatic compound metabolic process 5937
          nucleobase-containing compound metabolic process 5696
            nucleic acid metabolic process 5103
              DNA metabolic process 984
                DNA repair 559
                  pyrimidine dimer repair 9
                    photoreactive repair 1
                    pyrimidine dimer repair by nucleotide-excision repair 4
paths to the root