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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-excision repair
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Accession:GO:0006289 term browser browse the term
Definition:A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Comment:Note that although intrastrand cross-link repair is not exactly synonymous with nucleotide excision repair, nucleotide excision repair includes the repair of intrastrand cross-links. The synonym field is being used to reflect the broad substrate specificity of nucleotide excision repair.
Synonyms:exact_synonym: NER;   pyrimidine-dimer repair, DNA damage excision
 related_synonym: intrastrand cross-link repair
 alt_id: GO:0045001



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nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC095390.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Brca2 BRCA2, DNA repair associated involved_in ISO
IEA
(PMID:16845393)
GO_REF:0000107
RGD
Ensembl
PMID:16845393 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Brip1 BRCA1 interacting helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Cetn1 centrin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293
JBrowse link
G Cetn2 centrin 2 involved_in IBA
ISO
PMID:21873635
(PMID:15964821)
RGD PMID:15964821 PMID:21873635 RGD:13792537 NCBI chr  X:150,769,944...150,775,052
Ensembl chr  X:150,769,953...150,774,919
JBrowse link
G Commd1 copper metabolism domain containing 1 involved_in ISO (PMID:23144634) RGD PMID:23144634 NCBI chr14:96,880,463...96,984,494
Ensembl chr14:96,880,463...96,984,501
JBrowse link
G Dclre1a DNA cross-link repair 1A acts_upstream_of_or_within ISO MGI:2180947 (MGI:1859725|PMID:10848582) RGD PMID:10848582 MGI:1859725 NCBI chr 1:255,569,911...255,589,815
Ensembl chr 1:255,569,919...255,589,678
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO
IEA
(PMID:19109893)
GO_REF:0000107
RGD
Ensembl
PMID:19109893 GO_REF:0000107 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in
ISO MGI:2183944 (MGI:63544|PMID:8275084)
(PMID:7657672)
UniProtKB:P07903 (PMID:11707424), (PMID:3290851)
RGD PMID:3290851 PMID:7657672 PMID:8275084 PMID:11707424 MGI:63544 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within
involved_in
ISO MGI:2183949 (MGI:1267106|PMID:9651581), (MGI:2179786|PMID:11950998)
(PMID:8692841)
UniProtKB:Q60452 (PMID:2835663)
RGD PMID:2835663 PMID:8692841 PMID:9651581 PMID:11950998 MGI:1267106 MGI:2179786 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17509950)
(PMID:17466626), (PMID:17509950), (PMID:8692841)
RGD PMID:8692841 PMID:17466626 PMID:17509950 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within
ISO (PMID:8797827)
(PMID:10413517), (PMID:14728600), (PMID:32034146), (PMID:8797827)
(PMID:10644440)
RGD PMID:8797827 PMID:10413517 PMID:10644440 PMID:14728600 PMID:32034146 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within
ISO (PMID:11259578)
(PMID:11259578), (PMID:32522879), (PMID:32821917), (PMID:7657672), (PMID:8090225)
MGI:2182793 (MGI:1333374|PMID:10022922)
RGD PMID:7657672 PMID:8090225 PMID:10022922 PMID:11259578 PMID:32522879 More... MGI:1333374 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603016)
(PMID:20603015), (PMID:20603016), (PMID:25430771)
RGD PMID:20603015 PMID:20603016 PMID:25430771 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fancc FA complementation group C involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1858041 (MGI:1355066|PMID:8704201)
RGD PMID:8704201 PMID:21873635 MGI:1355066, RGD:13792537 NCBI chr17:1,680,660...1,822,610
Ensembl chr17:1,681,324...1,829,376
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:97,321,401...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (MGI:5506835|PMID:23637614)
(PMID:23637614)
RGD PMID:23637614 MGI:5506835 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(PMID:32034146)
UniProt
RGD
PMID:32034146 GO_REF:0000024 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in ISO (PMID:8990169)
(MGI:1289919|PMID:9743625)
RGD PMID:8990169 PMID:9743625 MGI:1289919 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1508673) RGD PMID:1508673 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Poll DNA polymerase lambda involved_in ISO (PMID:10982892) RGD PMID:10982892 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:9372924) RGD PMID:9372924 NCBI chr19:23,313,563...23,320,702
Ensembl chr19:23,314,797...23,320,695
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in ISO (PMID:19941824), (PMID:8168482), (PMID:9734359) RGD PMID:8168482 PMID:9734359 PMID:19941824 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319
JBrowse link
G Rad51d RAD51 paralog D NOT|acts_upstream_of_or_within ISO (MGI:4430476|PMID:19327148) RGD PMID:19327148 MGI:4430476 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rpa1 replication protein A1 involved_in IBA
ISO
PMID:21873635
(PMID:9430682)
RGD PMID:9430682 PMID:21873635 RGD:13792537 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in ISO
IBA
ISS
(PMID:9430682)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9430682 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in ISO
IBA
(PMID:9430682)
PMID:21873635
RGD PMID:9430682 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19596236) RGD PMID:19596236 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
ISS
(PMID:7663514)
GO_REF:0000024
RGD
UniProt
PMID:7663514 GO_REF:0000024 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1857939 (MGI:2179786|PMID:11950998), (MGI:2448221|PMID:12509265) RGD PMID:11950998 PMID:12509265 MGI:2179786 MGI:2448221 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1859840|MGI:1931883 (MGI:2667287|PMID:12815074), (MGI:3697767|PMID:17049932), (MGI:4365898|PMID:19615386), (MGI:86029|PMID:9067411)
(PMID:11259578), (PMID:19941824), (PMID:8168482), (PMID:9734359)
(MGI:5427285|PMID:22431748)
MGI:1859840|MGI:1931883 (MGI:2667287|PMID:12815074), (MGI:4365898|PMID:19615386), (MGI:86029|PMID:9067411)
RGD PMID:8168482 PMID:9067411 PMID:9734359 PMID:11259578 PMID:12815074 More... MGI:2667287 MGI:3697767 MGI:4365898 MGI:5427285 MGI:86029, RGD:13792537 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
nucleotide-excision repair involved in interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO
IBA
(PMID:32034146)
PMID:21873635
RGD PMID:32034146 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17466626) RGD PMID:17466626 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 involved_in IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:17290226)
RGD PMID:12517771 PMID:17290226 PMID:21873635 RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Polb DNA polymerase beta NOT|involved_in ISO (PMID:20227374) RGD PMID:20227374 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
IBA
(PMID:20227374)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:20227374 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO
IBA
(PMID:20227374)
PMID:21873635
RGD PMID:20227374 PMID:21873635 RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA
(PMID:20227374)
PMID:21873635
RGD PMID:20227374 PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polk DNA polymerase kappa involved_in ISO (PMID:20227374) RGD PMID:20227374 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:22547097) RGD PMID:22547097 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA
ISO
PMID:21873635
(PMID:8692841)
RGD PMID:8692841 PMID:21873635 RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO
IBA
(PMID:17466626), (PMID:8692841)
PMID:21873635
RGD PMID:8692841 PMID:17466626 PMID:21873635 RGD:13792537 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:10413517), (PMID:22547097)
(PMID:22547097)
(PMID:10413517), (PMID:22547097), (PMID:32034146)
RGD PMID:10413517 PMID:22547097 PMID:32034146 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603015), (PMID:20603016), (PMID:25430771) RGD PMID:20603015 PMID:20603016 PMID:25430771 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) RGD PMID:19506022 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA
ISO
PMID:21873635
(PMID:21148310)
RGD PMID:21148310 PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:7657672) RGD PMID:7657672 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:11790111) RGD PMID:11790111 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in IBA
ISO
PMID:21873635
(PMID:32522879), (PMID:32821917), (PMID:7657672), (PMID:8090225)
RGD PMID:7657672 PMID:8090225 PMID:32522879 PMID:32821917 PMID:21873635 RGD:13792537 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO
IBA
(PMID:7657672)
PMID:21873635
RGD PMID:7657672 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO
IBA
(PMID:11790111), (PMID:14728600)
PMID:21873635
RGD PMID:11790111 PMID:14728600 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(MGI:1289919|PMID:9743625)
(PMID:8990169)
RGD PMID:8990169 PMID:9743625 PMID:21873635 MGI:1289919, RGD:13792537 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5514340 (MGI:5506835|PMID:23637614)
RGD PMID:23637614 PMID:21873635 MGI:5506835, RGD:13792537 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
JBrowse link
pyrimidine dimer repair by nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (MGI:1342943|PMID:10454634) RGD PMID:10454634 MGI:1342943 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (MGI:3590574|PMID:12660172) RGD PMID:12660172 MGI:3590574 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:21149730)
(MGI:5298332|PMID:21149730)
RGD PMID:21149730 MGI:5298332 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1931883 (MGI:3697767|PMID:17049932) RGD PMID:17049932 MGI:3697767 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul4a cullin 4A acts_upstream_of_or_within ISO MGI:3851025 (MGI:3850765|PMID:19481525) RGD PMID:19481525 MGI:3850765 NCBI chr16:76,385,298...76,422,316
Ensembl chr16:76,384,546...76,422,330
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) RGD PMID:18650382 MGI:3807115 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO
ISS
(PMID:28719581)
GO_REF:0000024
RGD
UniProt
PMID:28719581 GO_REF:0000024 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within ISO (PMID:19506022) RGD PMID:19506022 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:16916636), (PMID:17297471) RGD PMID:16916636 PMID:17297471 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) RGD PMID:16246722 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within
ISO
IBA
IMP
(PMID:10564257), (PMID:16916636), (PMID:26620705)
PMID:21873635
MGI:1932102 (MGI:2448221|PMID:12509265), (MGI:87553|PMID:9150142)
RGD PMID:9150142 PMID:10564257 PMID:12509265 PMID:16916636 PMID:26620705 More... MGI:2448221 MGI:87553, RGD:13792537, RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:12732143)
RGD PMID:12732143 PMID:21873635 RGD:13792537 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (MGI:3590574|PMID:12660172) RGD PMID:12660172 MGI:3590574 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Polr2i RNA polymerase II subunit I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:22466612)
UniProt
RGD
PMID:22466612 GO_REF:0000024 NCBI chr10:6,880,684...6,925,033
Ensembl chr10:6,828,795...6,925,355
JBrowse link
G Uvssa UV-stimulated scaffold protein A involved_in ISO
IEA
ISS
IBA
(PMID:22466610), (PMID:22466611), (PMID:22466612)
GO_REF:0000107
GO_REF:0000024
PMID:21873635
RGD
Ensembl
UniProt
PMID:22466610 PMID:22466611 PMID:22466612 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:77,309,188...77,351,922
Ensembl chr14:77,314,056...77,351,903
JBrowse link
G Xab2 XPA binding protein 2 involved_in ISO
ISS
(PMID:10944529) RGD PMID:10944529 PMID:10944529 RGD:8554289 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18877
    metabolic process 11591
      cellular metabolic process 9831
        cellular macromolecule metabolic process 3481
          DNA metabolic process 999
            DNA repair 512
              nucleotide-excision repair 56
                global genome nucleotide-excision repair 0
                nucleotide-excision repair involved in interstrand cross-link repair 3
                nucleotide-excision repair, DNA damage recognition + 1
                nucleotide-excision repair, DNA damage removal 0
                nucleotide-excision repair, DNA duplex unwinding 2
                nucleotide-excision repair, DNA gap filling 6
                nucleotide-excision repair, DNA incision + 10
                nucleotide-excision repair, preincision complex assembly 2
                nucleotide-excision repair, preincision complex stabilization 0
                pyrimidine dimer repair by nucleotide-excision repair 4
                regulation of nucleotide-excision repair + 5
                transcription-coupled nucleotide-excision repair + 10
Path 2
Term Annotations click to browse term
  biological_process 18877
    metabolic process 11591
      cellular metabolic process 9831
        cellular aromatic compound metabolic process 5651
          nucleobase-containing compound metabolic process 5422
            nucleic acid metabolic process 4890
              DNA metabolic process 999
                DNA repair 512
                  nucleotide-excision repair 56
                    global genome nucleotide-excision repair 0
                    nucleotide-excision repair involved in interstrand cross-link repair 3
                    nucleotide-excision repair, DNA damage recognition + 1
                    nucleotide-excision repair, DNA damage removal 0
                    nucleotide-excision repair, DNA duplex unwinding 2
                    nucleotide-excision repair, DNA gap filling 6
                    nucleotide-excision repair, DNA incision + 10
                    nucleotide-excision repair, preincision complex assembly 2
                    nucleotide-excision repair, preincision complex stabilization 0
                    pyrimidine dimer repair by nucleotide-excision repair 4
                    regulation of nucleotide-excision repair + 5
                    transcription-coupled nucleotide-excision repair + 10
paths to the root