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ONTOLOGY REPORT - ANNOTATIONS


Term:base-excision repair, gap-filling
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Accession:GO:0006287 term browser browse the term
Definition:Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template.


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base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen acts_upstream_of_or_within ISO (MGI:3045901|PMID:15177179) RGD PMID:15177179 MGI:3045901 NCBI chr 3:124,880,698...124,884,570
Ensembl chr 3:124,880,698...124,884,570
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within IDA
ISO
(MGI:3045901|PMID:15177179) RGD PMID:15177179, PMID:17412650 MGI:3045901, RGD:2302580 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:3045901|PMID:15177179)
(PMID:10559260), (PMID:10559261)
Ensembl
RGD
PMID:10559260 PMID:10559261 PMID:15177179, PMID:21873635 GO_REF:0000107 MGI:3045901, RGD:13792537 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA
(PMID:10559260)
PMID:21873635
RGD PMID:10559260, PMID:21873635 RGD:13792537 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within ISO (PMID:15177179) RGD PMID:15177179 NCBI chr 1:141,172,117...141,188,893
Ensembl chr 1:141,172,531...141,188,031
JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS
(PMID:19806195)
GO_REF:0000024
RGD
UniProt
PMID:19806195 GO_REF:0000024 NCBI chr 1:265,290,337...265,298,847
Ensembl chr 1:265,290,339...265,298,797
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular macromolecule metabolic process 8243
          DNA metabolic process 882
            base-excision repair, gap-filling 6
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      cellular metabolic process 10755
        cellular nitrogen compound metabolic process 6601
          nucleobase-containing compound metabolic process 5420
            nucleic acid metabolic process 4930
              DNA metabolic process 882
                DNA repair 488
                  base-excision repair 45
                    base-excision repair, gap-filling 6
paths to the root