Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:DNA-templated DNA replication
go back to main search page
Accession:GO:0006261 term browser browse the term
Definition:A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
Synonyms:exact_synonym: DNA-dependent DNA replication
 alt_id: GO:0006262;   GO:0006263
 xref: Reactome:R-HSA-69306 "DNA Replication"

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:8,968,704...9,080,620
Ensembl chrNW_004936494:8,968,704...9,080,620 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:10,693,601...10,698,139
Ensembl chrNW_004936470:10,693,855...10,697,595 		JBrowse link
G Gins2 GINS complex subunit 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Gins4 GINS complex subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936785:1,043,342...1,059,635
Ensembl chrNW_004936785:1,043,143...1,059,636 		JBrowse link
G Helb DNA helicase B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11557815) Ensembl
MGI		 PMID:11557815 GO_REF:0000107 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
G LOC101974971 replication factor C subunit 4-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:11,741,006...11,742,186 JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936492:5,016,948...5,038,494
Ensembl chrNW_004936492:5,016,323...5,038,526 		JBrowse link
G Mcmbp minichromosome maintenance complex binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:9,184,865...9,212,883
Ensembl chrNW_004936486:9,185,469...9,212,838 		JBrowse link
G Orc6 origin recognition complex subunit 6 acts_upstream_of_or_within ISO (PMID:20219456) MGI PMID:20219456 NCBI chrNW_004936475:78,234...85,387
Ensembl chrNW_004936475:78,217...85,517 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:7503737 PMID:9620226 GO_REF:0000107 GO_REF:0000118 RGD:2299945 RGD:2307013 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO
IEA		 RGD
Ensembl		 PMID:7503737 GO_REF:0000107 RGD:2307013 NCBI chrNW_004936478:19,074,871...19,083,624
Ensembl chrNW_004936478:19,072,810...19,083,669 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:20334433) RGD
ComplexPortal		 PMID:7503737 PMID:20334433 RGD:2307013 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:7503737 GO_REF:0000107 GO_REF:0000118 RGD:2307013 NCBI chrNW_004936599:2,383,919...2,385,705
Ensembl chrNW_004936599:2,383,792...2,386,537 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936583:340,428...386,633
Ensembl chrNW_004936583:341,456...386,395 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:33051204) ComplexPortal PMID:33051204 NCBI chrNW_004936559:220,941...222,783 JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936556:1,161,359...1,167,283
Ensembl chrNW_004936556:1,160,385...1,170,843 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:4,988,469...5,004,110
Ensembl chrNW_004936541:4,988,368...5,003,922 		JBrowse link
G Poln DNA polymerase nu involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Polq DNA polymerase theta involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Prim2 DNA primase subunit 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936476:3,736,663...3,997,936
Ensembl chrNW_004936476:3,737,061...3,996,910 		JBrowse link
G Rfc1 replication factor C subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:6,938,138...7,009,144
Ensembl chrNW_004936482:6,938,681...6,993,705 		JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936543:3,263,661...3,273,178
Ensembl chrNW_004936543:3,263,878...3,279,667 		JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:28,274,997...28,295,349
Ensembl chrNW_004936472:28,278,069...28,299,226 		JBrowse link
G Rfc4 replication factor C subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936578:3,204,035...3,219,806 JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:4,736,332...4,747,323
Ensembl chrNW_004936558:4,735,678...4,747,538 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:5,611,775...5,620,846
Ensembl chrNW_004936592:5,614,619...5,619,627 		JBrowse link
G Twnk twinkle mtDNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,691,112...4,696,523
Ensembl chrNW_004936600:4,691,104...4,696,507 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936697:129,821...184,238
Ensembl chrNW_004936697:130,105...183,576 		JBrowse link
G Wdr18 WD repeat domain 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:423,672...429,875
Ensembl chrNW_004936588:423,443...432,303 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936633:3,853,201...3,873,983
Ensembl chrNW_004936633:3,853,058...3,874,121 		JBrowse link
DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,058,048...2,067,468
Ensembl chrNW_004936542:2,056,905...2,067,542 		JBrowse link
DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccne1 cyclin E1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12941272) Ensembl
MGI		 PMID:12941272 GO_REF:0000107 NCBI chrNW_004936570:5,536,817...5,547,880
Ensembl chrNW_004936570:5,536,672...5,548,008 		JBrowse link
G Ccne2 cyclin E2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12941272) Ensembl
MGI		 PMID:12941272 GO_REF:0000107 NCBI chrNW_004936544:7,839,730...7,852,251
Ensembl chrNW_004936544:7,839,113...7,851,335 		JBrowse link
G Cdc45 cell division cycle 45 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936619:3,420,110...3,452,419
Ensembl chrNW_004936619:3,420,191...3,452,436 		JBrowse link
G Cdc6 cell division cycle 6 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936490:15,360,477...15,370,519
Ensembl chrNW_004936490:15,360,504...15,370,008 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004937104:132,692...160,965 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936492:5,016,948...5,038,494
Ensembl chrNW_004936492:5,016,323...5,038,526 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936469:40,014,892...40,059,571
Ensembl chrNW_004936469:40,014,863...40,059,580 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
G Noc3l NOC3 like DNA replication regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936601:782,923...811,598
Ensembl chrNW_004936601:782,901...816,185 		JBrowse link
G Orc1 origin recognition complex subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936522:8,580,661...8,610,750
Ensembl chrNW_004936522:8,586,591...8,610,747 		JBrowse link
G Orc2 origin recognition complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:215,483...259,867
Ensembl chrNW_004936726:211,859...255,754 		JBrowse link
G Orc3 origin recognition complex subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:4,222,036...4,281,800
Ensembl chrNW_004936510:4,225,697...4,282,190 		JBrowse link
G Orc4 origin recognition complex subunit 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:29,131,892...29,193,258
Ensembl chrNW_004936469:29,131,789...29,194,863 		JBrowse link
G Orc5 origin recognition complex subunit 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936479:19,450,087...19,516,976
Ensembl chrNW_004936479:19,450,070...19,517,160 		JBrowse link
G Orc6 origin recognition complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:78,234...85,387
Ensembl chrNW_004936475:78,217...85,517 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:2175912), (PMID:26975377)
(PMID:10523676)		 ComplexPortal PMID:2175912 PMID:10523676 PMID:26975377 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,105,365...4,132,079
Ensembl chrNW_004936599:4,105,301...4,132,054 		JBrowse link
G Prim1 DNA primase subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,033,921...1,054,203
Ensembl chrNW_004936646:1,036,777...1,054,108 		JBrowse link
G Prim2 DNA primase subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:3,736,663...3,997,936
Ensembl chrNW_004936476:3,737,061...3,996,910 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12429860) Ensembl
TreeGrafter
MGI		 PMID:12429860 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
DNA replication termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtf2 replication termination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936875:369,065...414,522
Ensembl chrNW_004936875:369,065...414,053 		JBrowse link
DNA replication, Okazaki fragment processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
DNA replication, synthesis of primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:2175912), (PMID:27019227), (PMID:8026492)
(PMID:8026492)		 UniProt PMID:2175912 PMID:8026492 PMID:27019227 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,105,365...4,132,079
Ensembl chrNW_004936599:4,105,301...4,132,054 		JBrowse link
G Polrmt RNA polymerase mitochondrial involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936588:209,720...221,847
Ensembl chrNW_004936588:209,610...221,905 		JBrowse link
G Prim1 DNA primase subunit 1 involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936646:1,033,921...1,054,203
Ensembl chrNW_004936646:1,036,777...1,054,108 		JBrowse link
G Prim2 DNA primase subunit 2 involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:3,736,663...3,997,936
Ensembl chrNW_004936476:3,737,061...3,996,910 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
DNA strand elongation involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm3 minichromosome maintenance complex component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:4084590) UniProt PMID:4084590 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:19,074,871...19,083,624
Ensembl chrNW_004936478:19,072,810...19,083,669 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
DNA strand elongation involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936620:421,845...446,853
Ensembl chrNW_004936620:422,230...446,753 		JBrowse link
DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 involved_in ISO (PMID:26240375) UniProt PMID:26240375 NCBI chrNW_004936526:8,570,488...8,627,004 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:2,482,915...2,554,077
Ensembl chrNW_004936550:2,485,769...2,539,548 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
DNA synthesis involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 ISO RGD PMID:15696186 RGD:2301349 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:2,784,891...2,794,693
Ensembl chrNW_004936594:2,784,226...2,794,830 		JBrowse link
lagging strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig1 DNA ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936836:1,151...287,438 JBrowse link
leading strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:220,941...222,783 JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262) UniProt PMID:26300262 NCBI chrNW_004936658:1,657,226...1,734,150 JBrowse link
mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16327803) Ensembl
MGI		 PMID:16327803 GO_REF:0000107 NCBI chrNW_004936694:43,898...74,939
Ensembl chrNW_004936694:44,635...74,958 		JBrowse link
G Mgme1 mitochondrial genome maintenance exonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:2,154,446...2,167,633
Ensembl chrNW_004936485:2,153,295...2,166,908 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15888483) Ensembl
TreeGrafter
MGI
InterPro		 PMID:15888483 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23197651) Ensembl
TreeGrafter
MGI		 PMID:23197651 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:4,988,469...5,004,110
Ensembl chrNW_004936541:4,988,368...5,003,922 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
G Rnaseh1 ribonuclease H1 acts_upstream_of_or_within ISO (PMID:12667461) MGI PMID:12667461 NCBI chrNW_004936532:1,700,414...1,714,689
Ensembl chrNW_004936532:1,701,227...1,714,695 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:815,401...848,749
Ensembl chrNW_004936498:815,399...848,793 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17486094) Ensembl
MGI		 PMID:17486094 GO_REF:0000107 NCBI chrNW_004936470:41,354,387...41,401,308
Ensembl chrNW_004936470:41,354,287...41,401,317 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936592:5,611,775...5,620,846
Ensembl chrNW_004936592:5,614,619...5,619,627 		JBrowse link
G Tefm transcription elongation factor, mitochondrial NOT|involved_in ISO (PMID:21278163) UniProt PMID:21278163 NCBI chrNW_004936538:2,803,195...2,812,939
Ensembl chrNW_004936538:2,802,922...2,815,895 		JBrowse link
G Tk2 thymidine kinase 2 acts_upstream_of_or_within ISO (PMID:18434326) MGI PMID:18434326 NCBI chrNW_004936475:16,851,380...16,875,195
Ensembl chrNW_004936475:16,851,184...16,875,133 		JBrowse link
G Twnk twinkle mtDNA helicase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,691,112...4,696,523
Ensembl chrNW_004936600:4,691,104...4,696,507 		JBrowse link
mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm6 minichromosome maintenance complex component 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:40,014,892...40,059,571
Ensembl chrNW_004936469:40,014,863...40,059,580 		JBrowse link
mitotic DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins3 GINS complex subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:10,209,127...10,216,701
Ensembl chrNW_004936475:10,209,071...10,218,051 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936836:1,151...287,438 JBrowse link
mitotic DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,420,110...3,452,419
Ensembl chrNW_004936619:3,420,191...3,452,436 		JBrowse link
mitotic DNA replication termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtf2 replication termination factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936875:369,065...414,522
Ensembl chrNW_004936875:369,065...414,053 		JBrowse link
mitotic DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Recql5 RecQ like helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:829,296...862,615
Ensembl chrNW_004936594:828,475...862,912 		JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated involved_in ISO (PMID:21076401) BHF-UCL PMID:21076401 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:24115439) BHF-UCL PMID:24115439 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:5,589,621...5,602,221
Ensembl chrNW_004936489:5,589,538...5,600,539 		JBrowse link
negative regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynll1 dynein light chain LC8-type 1 involved_in ISO (PMID:30464262), (PMID:37696958) UniProt PMID:30464262 PMID:37696958 NCBI chrNW_004936668:451,846...484,841
Ensembl chrNW_004936668:448,489...500,800 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
nuclear DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family AAA domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936500:8,712,168...8,720,728
Ensembl chrNW_004936500:8,712,205...8,739,953 		JBrowse link
G Znf830 zinc finger protein 830 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21191184) Ensembl
TreeGrafter
MGI		 PMID:21191184 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:243,557...245,353
Ensembl chrNW_004936538:244,188...245,300 		JBrowse link
Okazaki fragment processing involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig1 DNA ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936568:5,206,135...5,245,324
Ensembl chrNW_004936568:5,206,135...5,244,450 		JBrowse link
G E2f8 E2F transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:322,863...339,365
Ensembl chrNW_004936654:322,863...338,699 		JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end-product specific receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,418,342...1,422,005
Ensembl chrNW_004936727:1,418,799...1,422,147 		JBrowse link
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215406) Ensembl
MGI		 PMID:20215406 GO_REF:0000107 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Ciz1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within ISO (PMID:20215406)
(PMID:15585571)		 MGI PMID:15585571 PMID:20215406 NCBI chrNW_004936487:15,728,982...15,748,737 JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Endog endonuclease G involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,282,115...16,285,486
Ensembl chrNW_004936487:16,282,398...16,285,418 		JBrowse link
G Mtnap1 mitochondrial nucleoid associated protein 1 involved_in ISO (PMID:37676315) UniProt PMID:37676315 NCBI chrNW_004936655:987,527...1,002,910
Ensembl chrNW_004936655:986,681...1,002,300 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:5,611,775...5,620,846
Ensembl chrNW_004936592:5,614,619...5,619,627 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:2161540) Ensembl
MGI		 PMID:2161540 GO_REF:0000107 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Cdc7 cell division cycle 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:7,445,882...7,515,196
Ensembl chrNW_004936537:7,488,776...7,514,322 		JBrowse link
G Dbf4 DBF4-CDC7 kinase regulatory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936763:963,195...987,198
Ensembl chrNW_004936763:963,195...986,926 		JBrowse link
G Dbf4b DBF4B-CDC7 kinase regulatory subunit involved_in ISO (PMID:15668232) UniProt PMID:15668232 NCBI chrNW_004936541:1,108,577...1,133,203 JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Wiz WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chrNW_004936596:5,061,674...5,084,931 JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (PMID:19090619) MGI PMID:19090619 NCBI chrNW_004936578:4,252,718...4,290,452
Ensembl chrNW_004936578:4,248,244...4,290,418 		JBrowse link
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znf365 zinc finger protein 365 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936614:833,665...853,547
Ensembl chrNW_004936614:835,866...853,547 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,775,224...11,805,489
Ensembl chrNW_004936490:11,772,046...11,805,759 		JBrowse link
G Mcidas multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:12,533,604...12,539,639
Ensembl chrNW_004936480:12,533,713...12,539,387 		JBrowse link
G Ticrr TOPBP1 interacting checkpoint and replication regulator involved_in ISO (PMID:20116089) UniProt PMID:20116089 NCBI chrNW_004936483:15,381,486...15,422,600 JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:3,853,201...3,873,983
Ensembl chrNW_004936633:3,853,058...3,874,121 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,911,109...1,940,897
Ensembl chrNW_004936672:1,910,851...1,941,520 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15980864) Ensembl
MGI		 PMID:15980864 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601 		JBrowse link
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11850834) Ensembl
MGI		 PMID:11850834 GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:8,899,245...9,253,024
Ensembl chrNW_004936511:9,061,676...9,253,486 		JBrowse link
G Ilkap ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chrNW_004936525:303,436...322,677
Ensembl chrNW_004936525:303,499...322,563 		JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:885,015...931,657
Ensembl chrNW_004936675:885,039...920,253 		JBrowse link
replication fork arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Timeless timeless circadian regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tipin TIMELESS interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079
Ensembl chrNW_004936658:1,699,044...1,715,582 		JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:29125140) UniProt PMID:29125140 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Blm BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Bod1l1 biorientation of chromosomes in cell division 1 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:13,927,605...13,975,722
Ensembl chrNW_004936477:13,930,161...13,974,589 		JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:14681210) MGI PMID:14681210 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cdk9 cyclin dependent kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796 		JBrowse link
G Cenpx centromere protein X involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:5,517,665...5,520,606
Ensembl chrNW_004936594:5,516,915...5,520,553 		JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,712,168...8,720,728
Ensembl chrNW_004936500:8,712,205...8,739,953 		JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:11,307,739...11,316,203
Ensembl chrNW_004936490:11,308,393...11,314,785 		JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:2,217,352...2,220,556
Ensembl chrNW_004936694:2,217,811...2,220,432 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:11,962,161...11,975,164
Ensembl chrNW_004936491:11,962,087...11,979,349 		JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,432,752...12,479,807
Ensembl chrNW_004936495:12,432,731...12,479,876 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,482,649...3,488,331
Ensembl chrNW_004936581:3,480,412...3,490,195 		JBrowse link
G Fancm FA complementation group M involved_in ISO (PMID:20347428) UniProt PMID:20347428 NCBI chrNW_004936583:4,085,802...4,145,621 JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:13,157,114...13,182,797
Ensembl chrNW_004936493:13,157,119...13,177,525 		JBrowse link
G LOC101959362 peroxisomal membrane protein PEX14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936623:4,313,186...4,462,462
Ensembl chrNW_004936623:4,313,147...4,462,528
Ensembl chrNW_004936623:4,313,147...4,462,528 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20457750), (PMID:22231448), (PMID:24573677) UniProt PMID:20457750 PMID:22231448 PMID:24573677 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G Mms22l MMS22 like, DNA repair protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936699:486,510...608,532
Ensembl chrNW_004936699:486,491...608,562 		JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,670,759...3,677,375
Ensembl chrNW_004936599:3,670,862...3,677,239 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:6,713,065...6,728,011
Ensembl chrNW_004936557:6,713,095...6,722,808 		JBrowse link
G Ooep oocyte expressed protein involved_in ISO (PMID:29125140) UniProt PMID:29125140 NCBI chrNW_004937318:2,623...3,622 JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:24115439) BHF-UCL PMID:24115439 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
G Rad51 RAD51 recombinase involved_in
acts_upstream_of_or_within		 ISO (PMID:22778135)
(PMID:18417535), (PMID:25585578)		 BHF-UCL
MGI
UniProt		 PMID:18417535 PMID:22778135 PMID:25585578 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Recql RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936548:5,349,878...5,384,603
Ensembl chrNW_004936548:5,362,517...5,384,338 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Timeless timeless circadian regulator involved_in ISO (PMID:26503245) UniProt PMID:26503245 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tipin TIMELESS interacting protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
G Tonsl tonsoku like, DNA repair protein involved_in ISO (PMID:21055983), (PMID:21055984), (PMID:21055985)
(PMID:27338793), (PMID:29478807)		 UniProt PMID:21055983 PMID:21055984 PMID:21055985 PMID:27338793 PMID:29478807 NCBI chrNW_004936470:7,817,444...7,829,124 JBrowse link
G Traip TRAF interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:1,434,629...1,466,382 JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
replication fork reversal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator associated arginine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,071,883...1,120,917
Ensembl chrNW_004936659:1,090,164...1,123,920 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,469,444...2,505,688
Ensembl chrNW_004936596:2,468,116...2,505,688 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        macromolecule metabolic process 9464
          nucleic acid metabolic process 5704
            DNA metabolic process 872
              DNA replication 256
                DNA-templated DNA replication 147
                  DNA replication initiation + 32
                  DNA replication termination + 1
                  DNA replication, synthesis of primer 7
                  DNA strand elongation involved in DNA replication + 13
                  DNA-templated DNA replication maintenance of fidelity + 53
                  cell cycle DNA replication + 40
                  mitochondrial DNA replication + 18
                  negative regulation of DNA-templated DNA replication + 8
                  plastid DNA replication 0
                  positive regulation of DNA-templated DNA replication + 16
                  pre-replicative complex assembly + 0
                  regulation of DNA-templated DNA replication + 34
                  replication of extrachromosomal circular DNA 0
                  rolling circle DNA replication 0
                  theta DNA replication 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        primary metabolic process 10066
          nucleobase-containing compound metabolic process 6201
            nucleic acid metabolic process 5704
              DNA metabolic process 872
                DNA replication 256
                  DNA-templated DNA replication 147
                    DNA replication initiation + 32
                    DNA replication termination + 1
                    DNA replication, synthesis of primer 7
                    DNA strand elongation involved in DNA replication + 13
                    DNA-templated DNA replication maintenance of fidelity + 53
                    cell cycle DNA replication + 40
                    mitochondrial DNA replication + 18
                    negative regulation of DNA-templated DNA replication + 8
                    plastid DNA replication 0
                    positive regulation of DNA-templated DNA replication + 16
                    pre-replicative complex assembly + 0
                    regulation of DNA-templated DNA replication + 34
                    replication of extrachromosomal circular DNA 0
                    rolling circle DNA replication 0
                    theta DNA replication 0
paths to the root