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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleotide catabolic process
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Accession:GO:0006244 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine nucleotide breakdown;   pyrimidine nucleotide catabolism;   pyrimidine nucleotide degradation


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dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chrNW_004955577:582,206...608,614 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (PMID:10681516) UniProtKB PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) UniProtKB PMID:9556635 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
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Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    cellular process 11098
      cellular metabolic process 7024
        cellular nitrogen compound metabolic process 4054
          cellular nitrogen compound catabolic process 292
            pyrimidine-containing compound catabolic process 14
              pyrimidine nucleotide catabolic process 5
                pyrimidine deoxyribonucleotide catabolic process + 4
                pyrimidine ribonucleotide catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7608
      cellular metabolic process 7024
        cellular aromatic compound metabolic process 3723
          nucleobase-containing compound metabolic process 3563
            nucleobase-containing small molecule metabolic process 356
              nucleoside phosphate metabolic process 312
                nucleotide metabolic process 302
                  pyrimidine nucleotide metabolic process 19
                    pyrimidine nucleotide catabolic process 5
                      pyrimidine deoxyribonucleotide catabolic process + 4
                      pyrimidine ribonucleotide catabolic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.