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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleobase catabolic process
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Accession:GO:0006208 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Synonyms:exact_synonym: pyrimidine base breakdown;   pyrimidine base catabolic process;   pyrimidine base catabolism;   pyrimidine base degradation


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pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:78,266,931...78,312,777
Ensembl chr14:78,266,931...78,308,933
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IDA
ISO
(MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD PMID:11988088, PMID:12651209, PMID:1629785 MGI:2657070, RGD:1599794 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO
IBA
(PMID:9718352)
PMID:21873635
RGD PMID:9718352, PMID:21873635 RGD:13792537 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:43,475,640...43,581,725
Ensembl chr15:43,477,629...43,542,939
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:37,716,371...37,819,347
Ensembl chr18:37,716,143...37,819,097
JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:211,423,022...211,438,533
Ensembl chr 1:211,423,022...211,438,531
JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,939,696...27,024,129
Ensembl chr 6:26,939,697...27,024,129
JBrowse link
G LOC103692570 dihydropyrimidinase-related protein 5-like NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,423,841...26,446,080
Ensembl chr 6:26,426,869...26,445,787
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:23835272)
Ensembl
RGD
PMID:23835272, PMID:2768248, PMID:21873635 GO_REF:0000107, RGD:1599052, RGD:13792537 NCBI chr 6:108,146,552...108,167,185
Ensembl chr 6:108,146,582...108,167,185
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO
IBA
IEA
(PMID:10410956)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:10410956, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase IDA PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:1512248), (PMID:18075467)
GO_REF:0000107
PMID:21873635
UniProt
RGD
Ensembl
PMID:1512248, PMID:18075467, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase IDA
ISO
PMID:8307005
(PMID:10410956), (PMID:18075467)
RGD PMID:10410956, PMID:18075467, PMID:8307005 RGD:1624990 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      small molecule metabolic process 1798
        nucleobase-containing small molecule metabolic process 591
          nucleobase metabolic process 49
            pyrimidine nucleobase metabolic process 23
              pyrimidine nucleobase catabolic process 9
                cytosine catabolic process 0
                pyrimidine nucleobase fermentation 0
                thymine catabolic process 3
                uracil catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular aromatic compound metabolic process 5700
          nucleobase-containing compound metabolic process 5488
            nucleobase-containing small molecule metabolic process 591
              nucleobase metabolic process 49
                pyrimidine nucleobase metabolic process 23
                  pyrimidine nucleobase catabolic process 9
                    cytosine catabolic process 0
                    pyrimidine nucleobase fermentation 0
                    thymine catabolic process 3
                    uracil catabolic process 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.