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ONTOLOGY REPORT - ANNOTATIONS

Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation

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oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak2 adenylate kinase 2 ISO RGD PMID:18423391 RGD:5147997 NCBI chrNW_004936474:15,887,014...15,908,522
Ensembl chrNW_004936474:15,886,412...15,908,560 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936807:601,759...678,531
Ensembl chrNW_004936807:601,730...676,966 		JBrowse link
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,323,247...1,325,520
Ensembl chrNW_004936619:1,323,246...1,325,522 		JBrowse link
G COX1 involved_in IEA UniProt GO_REF:0000041 NCBI chr MT:5,347...6,888 JBrowse link
G COX4I2 cytochrome c oxidase subunit 4I2 involved_in IEA UniProt GO_REF:0000041 Ensembl chrNW_004936485:18,631,322...18,644,593 JBrowse link
G CUNH2orf69 chromosome unknown C2orf69 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936825:936,690...948,102
Ensembl chrNW_004936825:942,471...947,999 		JBrowse link
G Fxn frataxin acts_upstream_of_or_within ISO (PMID:17404227)
(PMID:16278235) 		MGI PMID:16278235 PMID:17404227 NCBI chrNW_004936503:5,323,206...5,343,228 JBrowse link
G LOC101954852 cytochrome c oxidase subunit 6A1, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936668:506,242...508,658
Ensembl chrNW_004936668:506,242...509,409 		JBrowse link
G LOC101956567 cytochrome c oxidase subunit 6A2, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936543:8,381,115...8,402,935
Ensembl chrNW_004936543:8,380,896...8,381,991 		JBrowse link
G LOC101958081 cytochrome c oxidase subunit 8B, mitochondrial-like involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936888:91,432...95,024 JBrowse link
G LOC101961000 cytochrome c oxidase subunit 7C, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936469:5,337,331...5,339,716
Ensembl chrNW_004936469:5,337,333...5,342,174 		JBrowse link
G LOC101964414 cytochrome c oxidase subunit 8A, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936599:5,172,260...5,175,214
Ensembl chrNW_004936599:5,172,260...5,175,214 		JBrowse link
G LOC101965810 cytochrome c oxidase subunit 7A1, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936922:162,282...163,864
Ensembl chrNW_004936922:162,286...163,839 		JBrowse link
G LOC101967130 cytochrome c oxidase subunit 7B, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936683:2,781,614...2,787,570
Ensembl chrNW_004936683:2,781,623...2,787,570 		JBrowse link
G LOC101970194 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936470:43,269,744...43,280,886
Ensembl chrNW_004936470:43,269,711...43,283,683 		JBrowse link
G LOC101971634 cytochrome c oxidase subunit 4 isoform 1, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936641:2,690,723...2,695,230
Ensembl chrNW_004936641:2,690,176...2,695,387 		JBrowse link
G LOC101971648 cytochrome c oxidase subunit 5A, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936471:33,874,638...33,887,377
Ensembl chrNW_004936471:33,872,842...33,887,400 		JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:7,928,250...7,957,436
Ensembl chrNW_004936543:7,928,217...7,969,914 		JBrowse link
aerobic electron transport chain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COX3 involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:8,627...9,410 JBrowse link
G Slc25a51 solute carrier family 25 member 51 involved_in
acts_upstream_of 		ISO (PMID:33087354)
(PMID:33262325) 		UniProt PMID:33087354 PMID:33262325 NCBI chrNW_004936524:5,666,773...5,688,789 JBrowse link
ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COX2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:7,032...7,715 JBrowse link
G ND4 NADH dehydrogenase subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:10,186...11,563 JBrowse link
G ND4L NADH dehydrogenase subunit 4L involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr MT:9,896...10,192 JBrowse link
G ND5 NADH dehydrogenase subunit 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:11,763...13,580 JBrowse link
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936588:5,149,669...5,154,557
Ensembl chrNW_004936588:5,149,675...5,154,557 		JBrowse link
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936631:2,503,353...2,538,957
Ensembl chrNW_004936631:2,499,062...2,538,801 		JBrowse link
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bid BH3 interacting domain death agonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936807:708,340...750,127
Ensembl chrNW_004936807:708,276...750,093 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:18635541) MGI PMID:18635541 NCBI chrNW_004936501:5,035,986...5,043,864
Ensembl chrNW_004936501:5,034,224...5,043,909 		JBrowse link
G Dguok deoxyguanosine kinase ISO RGD PMID:30404003 RGD:15039296 NCBI chrNW_004936556:226,643...263,517
Ensembl chrNW_004936556:226,627...264,905 		JBrowse link
G LOC101966578 cytochrome c oxidase assembly factor 6 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:17,812,157...17,815,837 JBrowse link
G Mtch2 mitochondrial carrier 2 acts_upstream_of_or_within ISO (PMID:26219591) MGI PMID:26219591 NCBI chrNW_004936562:1,622,341...1,644,191
Ensembl chrNW_004936562:1,622,335...1,644,191 		JBrowse link
G Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 involved_in ISO (PMID:24746669) CAFA PMID:24746669 NCBI chrNW_004936507:11,254,729...11,256,395 JBrowse link
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:1,231,744...1,243,783
Ensembl chrNW_004936524:1,231,852...1,243,659 		JBrowse link
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:503,633...514,235
Ensembl chrNW_004936903:499,300...514,893 		JBrowse link
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,169,434...2,173,090
Ensembl chrNW_004936599:2,167,173...2,173,227 		JBrowse link
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936500:1,102,724...1,113,856
Ensembl chrNW_004936500:1,102,694...1,113,978 		JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338 		JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COX1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:5,347...6,888 JBrowse link
G COX3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:8,627...9,410 JBrowse link
G COX4I2 cytochrome c oxidase subunit 4I2 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 Ensembl chrNW_004936485:18,631,322...18,644,593 JBrowse link
G Cox7a2l cytochrome c oxidase subunit 7A2 like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936508:9,279,974...9,287,279 JBrowse link
G LOC101954852 cytochrome c oxidase subunit 6A1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:506,242...508,658
Ensembl chrNW_004936668:506,242...509,409 		JBrowse link
G LOC101956526 cytochrome c oxidase subunit 4 isoform 2, mitochondrial involved_in ISO (PMID:11311561) UniProt PMID:11311561 NCBI chrNW_004936485:18,631,826...18,637,675 JBrowse link
G LOC101956567 cytochrome c oxidase subunit 6A2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:8,381,115...8,402,935
Ensembl chrNW_004936543:8,380,896...8,381,991 		JBrowse link
G LOC101958081 cytochrome c oxidase subunit 8B, mitochondrial-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936888:91,432...95,024 JBrowse link
G LOC101961000 cytochrome c oxidase subunit 7C, mitochondrial involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936469:5,337,331...5,339,716
Ensembl chrNW_004936469:5,337,333...5,342,174 		JBrowse link
G LOC101964414 cytochrome c oxidase subunit 8A, mitochondrial involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936599:5,172,260...5,175,214
Ensembl chrNW_004936599:5,172,260...5,175,214 		JBrowse link
G LOC101965209 cytochrome c oxidase subunit 5B, mitochondrial involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936744:921,888...923,803 JBrowse link
G LOC101965810 cytochrome c oxidase subunit 7A1, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936922:162,282...163,864
Ensembl chrNW_004936922:162,286...163,839 		JBrowse link
G LOC101966864 cytochrome c oxidase subunit 7A2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936788:679,717...686,841 JBrowse link
G LOC101967130 cytochrome c oxidase subunit 7B, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936683:2,781,614...2,787,570
Ensembl chrNW_004936683:2,781,623...2,787,570 		JBrowse link
G LOC101970194 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936470:43,269,744...43,280,886
Ensembl chrNW_004936470:43,269,711...43,283,683 		JBrowse link
G LOC101971634 cytochrome c oxidase subunit 4 isoform 1, mitochondrial involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936641:2,690,723...2,695,230
Ensembl chrNW_004936641:2,690,176...2,695,387 		JBrowse link
G LOC101971648 cytochrome c oxidase subunit 5A, mitochondrial involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:33,874,638...33,887,377
Ensembl chrNW_004936471:33,872,842...33,887,400 		JBrowse link
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:15341590 RGD:1358393 NCBI chrNW_004936540:5,530,081...5,582,765
Ensembl chrNW_004936540:5,529,942...5,585,014 		JBrowse link
G Coq9 coenzyme Q9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,502,638...9,517,601
Ensembl chrNW_004936475:9,502,681...9,516,936 		JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:16,247,230...16,271,597
Ensembl chrNW_004936479:16,243,829...16,271,616 		JBrowse link
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936747:800,070...864,299
Ensembl chrNW_004936747:802,218...864,299 		JBrowse link
G ND1 NADH dehydrogenase subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:2,748...3,703 JBrowse link
G ND2 NADH dehydrogenase subunit 2 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr MT:3,914...4,955 JBrowse link
G ND3 NADH dehydrogenase subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:9,481...9,827 JBrowse link
G ND4 NADH dehydrogenase subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:10,186...11,563 JBrowse link
G ND5 NADH dehydrogenase subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:11,763...13,580 JBrowse link
G ND6 NADH dehydrogenase subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:13,564...14,088 JBrowse link
G Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936745:1,436,257...1,471,785
Ensembl chrNW_004936745:1,436,234...1,471,843 		JBrowse link
G Ndufa11 NADH:ubiquinone oxidoreductase subunit A11 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936588:3,383,674...3,389,862
Ensembl chrNW_004936588:3,383,509...3,390,087 		JBrowse link
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:5,149,669...5,154,557
Ensembl chrNW_004936588:5,149,675...5,154,557 		JBrowse link
G Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936487:10,542,484...10,557,199
Ensembl chrNW_004936487:10,542,101...10,557,432 		JBrowse link
G Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:4,733,707...4,750,390
Ensembl chrNW_004936471:4,731,578...4,750,444 		JBrowse link
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936524:1,231,744...1,243,783
Ensembl chrNW_004936524:1,231,852...1,243,659 		JBrowse link
G Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936600:5,122,004...5,126,776
Ensembl chrNW_004936600:5,116,423...5,129,334 		JBrowse link
G Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936470:23,118,162...23,123,648
Ensembl chrNW_004936470:23,118,164...23,123,749 		JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936498:6,626,334...6,636,973
Ensembl chrNW_004936498:6,624,986...6,637,078 		JBrowse link
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,503,353...2,538,957
Ensembl chrNW_004936631:2,499,062...2,538,801 		JBrowse link
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936903:503,633...514,235
Ensembl chrNW_004936903:499,300...514,893 		JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936562:1,667,780...1,674,670
Ensembl chrNW_004936562:1,664,293...1,674,670 		JBrowse link
G Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936815:144,994...157,788
Ensembl chrNW_004936815:144,994...158,144 		JBrowse link
G Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:715,093...720,035
Ensembl chrNW_004936588:715,162...719,968 		JBrowse link
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:2,081,493...2,085,635
Ensembl chrNW_004936599:2,081,079...2,084,730 		JBrowse link
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 involved_in IEA Ensembl
UniProt
TreeGrafter		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936599:2,169,434...2,173,090
Ensembl chrNW_004936599:2,167,173...2,173,227 		JBrowse link
G Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 involved_in IEA Ensembl
UniProt
TreeGrafter		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936670:2,742,553...2,772,697
Ensembl chrNW_004936670:2,742,553...2,772,697 		JBrowse link
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101962362 succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936482:7,822,974...7,823,467 JBrowse link
G LOC101977359 succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:376,384...376,887 JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936815:1,148,963...1,167,585
Ensembl chrNW_004936815:1,148,963...1,167,568 		JBrowse link
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:1,607,741...1,628,347
Ensembl chrNW_004936581:1,607,698...1,628,414 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936903:592,641...636,845
Ensembl chrNW_004936903:601,355...636,092 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936612:2,357,336...2,369,204
Ensembl chrNW_004936612:2,357,336...2,369,192 		JBrowse link
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYTB cytochrome b involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:14,162...15,301 JBrowse link
G LOC101954680 cytochrome c1, heme protein, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:8,082,791...8,085,197
Ensembl chrNW_004936470:8,082,791...8,085,185 		JBrowse link
G LOC101955110 cytochrome b-c1 complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936588:876,750...880,677
Ensembl chrNW_004936588:876,755...880,685 		JBrowse link
G LOC101956274 cytochrome b-c1 complex subunit 1, mitochondrial acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:385,942...396,196
Ensembl chrNW_004936529:385,851...396,230 		JBrowse link
G LOC101965457 ubiquinol-cytochrome-c reductase complex assembly factor 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:590,503...591,225
Ensembl chrNW_004936581:590,503...591,612 		JBrowse link
G LOC101968471 cytochrome b-c1 complex subunit 9 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936657:3,686,019...3,688,730
Ensembl chrNW_004936657:3,685,962...3,690,273 		JBrowse link
G LOC101970096 cytochrome b-c1 complex subunit 8 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936647:2,349,152...2,350,570
Ensembl chrNW_004936647:2,348,835...2,381,645 		JBrowse link
G LOC101976290 cytochrome b-c1 complex subunit 7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936470:46,300,547...46,305,016
Ensembl chrNW_004936470:46,300,613...46,305,016 		JBrowse link
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936747:800,070...864,299
Ensembl chrNW_004936747:802,218...864,299 		JBrowse link
negative regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,033,854...3,046,364
Ensembl chrNW_004936599:3,029,202...3,046,385 		JBrowse link
G Apoc3 apolipoprotein C3 ISO RGD PMID:11177239 RGD:1599177 NCBI chrNW_004936542:2,106,927...2,108,412
Ensembl chrNW_004936542:2,106,318...2,108,603 		JBrowse link
G Etfrf1 electron transfer flavoprotein regulatory factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936548:2,114,271...2,123,187
Ensembl chrNW_004936548:2,114,831...2,115,174 		JBrowse link
G Mlxipl MLX interacting protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,839,105...2,856,997
Ensembl chrNW_004936543:2,839,105...2,857,002 		JBrowse link
G Pde2a phosphodiesterase 2A involved_in ISO (PMID:21724846) UniProt PMID:21724846 NCBI chrNW_004936498:1,856,256...1,944,405
Ensembl chrNW_004936498:1,856,144...1,944,412 		JBrowse link
G Ppif peptidylprolyl isomerase F involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:404,574...411,381
Ensembl chrNW_004936521:404,544...411,539 		JBrowse link
G Rhoa ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,000,050...1,045,655
Ensembl chrNW_004936529:999,935...1,045,681 		JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:8903396 RGD:14995471 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:400,287...407,677
Ensembl chrNW_004936480:399,224...407,704 		JBrowse link
G Cdk1 cyclin dependent kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936614:2,300,682...2,313,611
Ensembl chrNW_004936614:2,300,513...2,313,624 		JBrowse link
G Chchd2 coiled-coil-helix-coiled-coil-helix domain containing 2 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:7,860,432...7,864,050
Ensembl chrNW_004936543:7,860,448...7,863,983 		JBrowse link
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Iscu iron-sulfur cluster assembly enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:492,024...498,587
Ensembl chrNW_004936769:491,530...498,692 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Pink1 PTEN induced kinase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
positive regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:18414044 RGD:10059611 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Myog myogenin ISO RGD PMID:10225962 RGD:9686132 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Sirt3 sirtuin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936888:63,131...78,536
Ensembl chrNW_004936888:63,546...77,950 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
proton motive force-driven mitochondrial ATP synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:743,036...752,836
Ensembl chrNW_004936517:742,791...753,336 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:951,236...958,907
Ensembl chrNW_004936646:951,009...959,516 		JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004936484:7,016,049...7,031,060
Ensembl chrNW_004936484:7,015,593...7,031,588 		JBrowse link
G Atp5f1d ATP synthase F1 subunit delta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:612,255...614,894
Ensembl chrNW_004936588:611,725...617,782 		JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936530:1,509,605...1,513,033
Ensembl chrNW_004936530:1,509,605...1,513,175 		JBrowse link
G Atp5me ATP synthase membrane subunit e involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,416,505...22,417,543
Ensembl chrNW_004936477:22,416,539...22,417,543 		JBrowse link
G Atp5mf ATP synthase membrane subunit f involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936750:1,716,752...1,725,700
Ensembl chrNW_004936750:1,716,757...1,725,727 		JBrowse link
G Atp5mg ATP synthase membrane subunit g involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004936542:3,453,287...3,461,125
Ensembl chrNW_004936542:3,453,009...3,465,382 		JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004936690:120,572...135,509
Ensembl chrNW_004936690:120,561...136,795 		JBrowse link
G Atp5pd ATP synthase peripheral stalk subunit d involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:354,416...359,415
Ensembl chrNW_004936594:353,980...359,414 		JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004936640:1,916,711...1,924,823
Ensembl chrNW_004936640:1,916,705...1,924,854 		JBrowse link
G Atp5po ATP synthase peripheral stalk subunit OSCP involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,444,681...8,454,694
Ensembl chrNW_004936500:8,444,546...8,456,048 		JBrowse link
G ATP6 ATP synthase F0 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:7,947...8,627 JBrowse link
G LOC101961097 ATP synthase subunit epsilon, mitochondrial involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:18,136,669...18,137,026 JBrowse link
G Stoml2 stomatin like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,129,149...3,132,405
Ensembl chrNW_004936524:3,129,148...3,133,056 		JBrowse link
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936643:2,339,073...2,354,780
Ensembl chrNW_004936643:2,339,070...2,354,784 		JBrowse link
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,895,771...2,897,761
Ensembl chrNW_004936543:2,897,068...2,897,745 		JBrowse link
G Metrn meteorin, glial cell differentiation regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:295,970...301,344
Ensembl chrNW_004936501:294,359...296,020
Ensembl chrNW_004936501:294,359...296,020 		JBrowse link
regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:615,133...634,618
Ensembl chrNW_004936809:615,139...635,990 		JBrowse link
G Ak4 adenylate kinase 4 involved_in ISO (PMID:26980435) UniProt PMID:26980435 NCBI chrNW_004936692:2,593,409...2,654,583
Ensembl chrNW_004936692:2,593,349...2,658,345 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Cox7a2l cytochrome c oxidase subunit 7A2 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:9,279,974...9,287,279 JBrowse link
G LOC101965810 cytochrome c oxidase subunit 7A1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936922:162,282...163,864
Ensembl chrNW_004936922:162,286...163,839 		JBrowse link
G LOC101966864 cytochrome c oxidase subunit 7A2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936788:679,717...686,841 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101975274 ubiquinol-cytochrome-c reductase complex assembly factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,241,426...25,254,057
Ensembl chrNW_004936476:25,241,369...25,254,171 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22629444 RGD:7240532 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037 		JBrowse link
G Slc25a23 solute carrier family 25 member 23 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:3,792,760...3,804,788
Ensembl chrNW_004936588:3,792,778...3,808,593 		JBrowse link
G Slc25a33 solute carrier family 25 member 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:3,585,372...3,603,515
Ensembl chrNW_004936623:3,585,253...3,604,310 		JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:2,803,195...2,812,939
Ensembl chrNW_004936538:2,802,922...2,815,895 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936736:1,986,361...2,113,455
Ensembl chrNW_004936736:1,978,110...2,113,451 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17543
    cellular process 17085
      metabolic process 11393
        generation of precursor metabolites and energy 459
          energy derivation by oxidation of organic compounds 410
            cellular respiration 316
              aerobic respiration 273
                oxidative phosphorylation 123
                  ATP synthesis coupled electron transport + 74
                  aerobic electron transport chain + 62
                  negative regulation of oxidative phosphorylation + 9
                  positive regulation of oxidative phosphorylation 5
                  proton motive force-driven mitochondrial ATP synthesis + 18
                  regulation of oxidative phosphorylation + 28
paths to the root