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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak2 adenylate kinase 2 JBrowse link 5 147,185,474 147,204,050 RGD:5147997
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 20 13,665,046 13,666,845 RGD:1624291
G Cox6b1 cytochrome c oxidase subunit 6B1 JBrowse link 1 89,075,987 89,084,834 RGD:1600115
G Cox6b2 cytochrome c oxidase subunit 6B2 JBrowse link 1 72,661,099 72,662,436 RGD:1600115
G Cox6c cytochrome c oxidase subunit 6C JBrowse link 7 74,723,177 74,735,650 RGD:1600115
G Cox6c-ps1 cytochrome c oxidase subunit VIc, pseudogene JBrowse link 19 56,982,949 56,983,807 RGD:1600115
G Cox7a2 cytochrome c oxidase subunit 7A2 JBrowse link 8 87,209,529 87,213,627 RGD:1600115
G Cox7a2l2 cytochrome c oxidase subunit VIIa polypeptide 2-like 2 JBrowse link 14 52,661,933 52,662,375 RGD:1600115
G Cox7b cytochrome c oxidase subunit 7B JBrowse link X 77,065,427 77,071,676 RGD:1600115
G Cox8a cytochrome c oxidase subunit 8A JBrowse link 1 222,466,575 222,468,896 RGD:1600115
G Cox8c cytochrome c oxidase subunit 8C JBrowse link 6 126,766,967 126,768,290 RGD:1600115
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:1600115
RGD:1624291
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:1624291
RGD:1600115
G Nipsnap2 nipsnap homolog 2 JBrowse link 12 30,527,540 30,566,090 RGD:1624291
G Surf1 SURF1, cytochrome c oxidase assembly factor JBrowse link 3 5,461,717 5,464,560 RGD:1624291
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1600115
RGD:1624291
ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07046778.1 RGD:1600115
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:13792537
G Mt-nd4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 JBrowse link MT 10,160 11,537 RGD:1600115
G Mt-nd4l mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L JBrowse link MT 9,870 10,166 RGD:1600115
G Mt-nd5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 JBrowse link MT 11,736 13,565 RGD:1600115
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 JBrowse link 9 69,919,863 69,953,182 RGD:1600115
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bid BH3 interacting domain death agonist JBrowse link 4 153,439,812 153,465,247 RGD:1624291
G Coq7 coenzyme Q7, hydroxylase JBrowse link 1 188,176,060 188,190,874 RGD:1624291
G Dguok deoxyguanosine kinase JBrowse link 4 115,180,433 115,208,061 RGD:15039296
G Mtch2 mitochondrial carrier 2 JBrowse link 3 79,678,141 79,695,356 RGD:1624291
G Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link 7 35,125,516 35,163,182 RGD:1624291
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 5 56,567,109 56,576,676 RGD:1624291
RGD:13792537
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 13 89,606,848 89,623,506 RGD:1624291
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 1 219,254,293 219,259,328 RGD:1624291
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link 20 10,265,826 10,275,298 RGD:1624291
RGD:13792537
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
G Taz tafazzin JBrowse link X 156,421,006 156,429,461 RGD:1624291
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC096404.1 RGD:13792537
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:13792537
RGD:1624291
RGD:1600115
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:1624291
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:1600115
RGD:1624291
G Atp5f1e ATP synthase F1 subunit epsilon JBrowse link 3 172,563,105 172,566,007 RGD:1624291
G Atp5me ATP synthase membrane subunit e JBrowse link 14 2,325,308 2,326,436 RGD:1624291
G Atp5mf ATP synthase membrane subunit f JBrowse link 12 11,191,799 11,198,369 RGD:1624291
G Atp5mg ATP synthase membrane subunit g JBrowse link 8 49,220,441 49,227,273 RGD:1624291
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:1624291
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:1624291
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link 11 24,286,806 24,294,419 RGD:1624291
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link 11 32,081,606 32,087,918 RGD:1624291
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 9 43,259,706 43,262,039 RGD:13792537
G Cyc1 cytochrome c-1 JBrowse link 7 117,409,576 117,411,953 RGD:13792537
G Mt-atp6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,919 8,599 RGD:1624291
G Mt-atp8 mitochondrially encoded ATP synthase membrane subunit 8 JBrowse link MT 7,758 7,961 RGD:1624291
G Stoml2 stomatin like 2 JBrowse link 5 58,472,561 58,476,158 RGD:1624291
RGD:1600115
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07071968.1 RGD:13792537
G AC096404.1 RGD:13792537
G AC114204.1 RGD:13792537
G AC128290.1 RGD:13792537
G Afg1l AFG1 like ATPase JBrowse link 20 47,038,824 47,208,812 RGD:1624291
G Cox4i1 cytochrome c oxidase subunit 4i1 JBrowse link 19 54,245,958 54,252,198 RGD:13792537
G Cox4i2 cytochrome c oxidase subunit 4i2 JBrowse link 3 148,234,546 148,245,424 RGD:13792537
G Cox5a cytochrome c oxidase subunit 5A JBrowse link 8 62,298,358 62,309,765 RGD:13792537
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 9 43,259,706 43,262,039 RGD:13792537
G Cox6a1 cytochrome c oxidase subunit 6A1 JBrowse link 12 47,024,442 47,027,495 RGD:13792537
G Cox6a2 cytochrome c oxidase subunit 6A2 JBrowse link 1 199,624,037 199,626,255 RGD:13792537
G Cox7c cytochrome c oxidase subunit 7C JBrowse link 2 14,699,878 14,701,903 RGD:13792537
G Cox8b cytochrome c oxidase, subunit VIIIb JBrowse link 1 213,648,787 213,650,247 RGD:727764
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:2300408
RGD:13792537
G Cyct cytochrome c, testis JBrowse link 3 63,204,779 63,211,847 RGD:13792537
G LOC100363502 cytochrome c, somatic-like JBrowse link 18 62,475,574 62,476,771 RGD:13792537
G Mt-co1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,323 6,867 RGD:13792537
G Mt-co3 mitochondrially encoded cytochrome c oxidase III JBrowse link MT 8,599 9,382 RGD:13792537
G Proca1 protein interacting with cyclin A1 JBrowse link 10 65,454,451 65,469,491 RGD:1600115
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:1358393
G Coq9 coenzyme Q9 JBrowse link 19 10,583,855 10,596,848 RGD:1624291
G Dld dihydrolipoamide dehydrogenase JBrowse link 6 50,597,677 50,618,694 RGD:1624291
G LOC100912599 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like JBrowse link 1 31,264,731 31,273,163 RGD:13792537
G LOC679739 NADH dehydrogenase (ubiquinone) Fe-S protein 6 JBrowse link 1 32,573,204 32,581,785 RGD:13792537
G Mt-nd2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 JBrowse link MT 3,904 4,942 RGD:1600115
G Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link 9 99,617,051 99,651,827 RGD:1624291
RGD:13792537
G Ndufa10l1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 1 JBrowse link 6 62,796,951 62,798,384 RGD:13792537
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 JBrowse link 7 18,683,553 18,696,332 RGD:13792537
G Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 JBrowse link 3 15,362,888 15,379,386 RGD:1600115
G Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 JBrowse link 3 111,458,227 111,469,239 RGD:13792537
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 5 56,567,109 56,576,676 RGD:1600115
G Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 JBrowse link 1 264,298,671 264,303,712 RGD:1600115
G Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 JBrowse link 7 98,813,062 98,819,408 RGD:1600115
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 1 162,369,801 162,376,024 RGD:1600115
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 13 89,606,848 89,623,506 RGD:13792537
G Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 JBrowse link 2 26,471,173 26,471,587 RGD:13792537
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 JBrowse link 1 219,141,289 219,144,610 RGD:13792537
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 1 219,254,293 219,259,328 RGD:13792537
G Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link 9 113,875,718 113,900,169 RGD:1624291
RGD:13792537
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sdha succinate dehydrogenase complex flavoprotein subunit A JBrowse link 1 31,545,631 31,570,601 RGD:13792537
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 JBrowse link 1 226,543,671 226,572,414 RGD:1624291
RGD:13792537
RGD:1600115
G Sdhc succinate dehydrogenase complex subunit C JBrowse link 13 89,498,047 89,518,979 RGD:13792537
G Sdhd succinate dehydrogenase complex subunit D JBrowse link 8 55,028,125 55,037,604 RGD:13792537
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07071968.1 RGD:13792537
G AC114204.1 RGD:13792537
G AC128290.1 RGD:13792537
G Cyc1 cytochrome c-1 JBrowse link 7 117,409,576 117,411,953 RGD:13792537
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:13792537
G Cyct cytochrome c, testis JBrowse link 3 63,204,779 63,211,847 RGD:13792537
G LOC100362172 LRRGT00112-like JBrowse link 17 22,655,291 22,678,983 RGD:13792537
G LOC100363502 cytochrome c, somatic-like JBrowse link 18 62,475,574 62,476,771 RGD:13792537
G LOC686324 similar to Protein UNQ655/PRO1286 homolog precursor RGD:1600115
RGD:13792537
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1600115
G Mt-cyb mitochondrially encoded cytochrome b JBrowse link MT 14,136 15,278 RGD:1624291
G Uqcc3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 1 225,076,301 225,077,079 RGD:1624291
RGD:13792537
RGD:1600115
G Uqcr10 ubiquinol-cytochrome c reductase, complex III subunit X JBrowse link 14 84,935,480 84,937,741 RGD:13792537
G Uqcrb ubiquinol-cytochrome c reductase binding protein JBrowse link 7 71,264,501 71,269,869 RGD:13792537
G Uqcrc1 ubiquinol-cytochrome c reductase core protein 1 JBrowse link 8 117,679,328 117,691,073 RGD:1624291
RGD:13792537
G Uqcrfs1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 JBrowse link 17 35,677,984 35,682,262 RGD:13792537
G Uqcrh ubiquinol-cytochrome c reductase hinge protein JBrowse link 5 134,919,040 134,927,235 RGD:1299349
RGD:13792537
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII JBrowse link 10 38,779,132 38,782,489 RGD:13792537
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 JBrowse link 15 59,990,131 60,056,710 RGD:1624291
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link 1 220,120,532 220,136,460 RGD:1624291
G Apoc3 apolipoprotein C3 JBrowse link 8 50,529,318 50,531,498 RGD:1599177
G Mlxipl MLX interacting protein-like JBrowse link 12 24,590,645 24,619,639 RGD:1624291
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Pde2a phosphodiesterase 2A JBrowse link 1 166,534,643 166,626,158 RGD:1624291
G Ppif peptidylprolyl isomerase F JBrowse link 16 1,979,191 1,985,912 RGD:1624291
RGD:1600115
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:1624291
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:14995471
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Coa6 cytochrome c oxidase assembly factor 6 JBrowse link 19 59,327,328 59,333,706 RGD:1624291
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1624291
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:1624291
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iscu iron-sulfur cluster assembly enzyme JBrowse link 12 48,621,454 48,627,297 RGD:1624291
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gadd45gip1 GADD45G interacting protein 1 JBrowse link 19 25,946,979 25,949,528 RGD:1624291
G Lexm lymphocyte expansion molecule JBrowse link 5 126,196,071 126,221,916 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:10059611
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:9686132
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1600115
RGD:1624291
G Pgk1 phosphoglycerate kinase 1 JBrowse link X 77,263,399 77,279,373 RGD:13792537
G Pgk2 phosphoglycerate kinase 2 JBrowse link 9 24,095,774 24,097,340 RGD:13792537
G RGD1560402 similar to Phosphoglycerate kinase 1 JBrowse link 2 42,726,747 42,728,100 RGD:13792537
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase JBrowse link 2 84,678,892 84,694,152 RGD:1600115
RGD:1624291
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 12 24,668,398 24,669,464 RGD:1624291
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link X 157,073,860 157,095,652 RGD:1624291
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1624291
RGD:1600115
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Cox7a1 cytochrome c oxidase subunit 7A1 JBrowse link 1 88,619,619 88,650,672 RGD:13792537
G Cox7a2 cytochrome c oxidase subunit 7A2 JBrowse link 8 87,209,529 87,213,627 RGD:13792537
G Cox7a2l cytochrome c oxidase subunit 7A2 like JBrowse link 6 6,695,807 6,709,790 RGD:1624291
RGD:13792537
G Cox7a2l2 cytochrome c oxidase subunit VIIa polypeptide 2-like 2 JBrowse link 14 52,661,933 52,662,375 RGD:13792537
G LOC687508 similar to Cytochrome c oxidase polypeptide VIIa-heart, mitochondrial precursor (Cytochrome c oxidase subunit VIIa-H) (COX VIIa-M) JBrowse link 1 91,070,593 91,096,190 RGD:13792537
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:7240532
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1624291
RGD:13792537
G Slc25a23 solute carrier family 25 member 23 JBrowse link 9 9,987,988 10,003,599 RGD:1624291
G Slc25a33 solute carrier family 25 member 33 JBrowse link 5 166,701,463 166,726,794 RGD:1624291
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 JBrowse link 20 5,712,200 5,723,902 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      ATP metabolic process 312
        oxidative phosphorylation 136
          ATP synthesis coupled electron transport + 76
          mitochondrial ATP synthesis coupled proton transport + 20
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 14
          regulation of oxidative phosphorylation + 37
Path 2
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      cellular metabolic process 10782
        phosphorus metabolic process 3255
          phosphate-containing compound metabolic process 3234
            phosphorylation 2413
              oxidative phosphorylation 136
                ATP synthesis coupled electron transport + 76
                mitochondrial ATP synthesis coupled proton transport + 20
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 14
                regulation of oxidative phosphorylation + 37
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.