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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AK2 adenylate kinase 2 JBrowse link 6 89,295,164 89,318,169 RGD:9068941
G CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 14 49,921,600 49,923,529 RGD:9068941
G COX6C COX6C protein JBrowse link 4 37,074,619 37,089,364 RGD:14298760
G COX7A1 cytochrome c oxidase subunit 7A1 JBrowse link 6 45,519,225 45,520,721 RGD:14298760
G FXN frataxin JBrowse link 1 222,412,485 222,433,224 RGD:9068941
G MSH2 mutS homolog 2 JBrowse link 3 93,082,958 93,163,556 RGD:14298760
G NIPSNAP2 nipsnap homolog 2 JBrowse link 3 16,910,589 16,941,767 RGD:14298760
G SURF1 SURF1 cytochrome c oxidase assembly factor JBrowse link 1 272,965,637 272,970,516 RGD:14298760
G TEFM transcription elongation factor, mitochondrial JBrowse link 12 42,864,582 42,875,705 RGD:14298760
ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MT-CO2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 8,203 8,890 RGD:14298760
G MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 JBrowse link MT 11,359 12,736 RGD:14298760
G MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 JBrowse link MT 12,935 14,755 RGD:14298760
G ND4L NADH dehydrogenase subunit 4L JBrowse link MT 11,069 11,365 RGD:14298760
G NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 JBrowse link 15 109,413,726 109,451,813 RGD:14298760
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BID BH3 interacting domain death agonist JBrowse link 5 69,849,007 69,874,647 RGD:14298760
G COQ7 coenzyme Q7, hydroxylase JBrowse link 3 26,366,006 26,373,604 RGD:9068941
G DGUOK deoxyguanosine kinase JBrowse link 3 69,054,749 69,091,366 RGD:9068941
G MTCH2 mitochondrial carrier 2 JBrowse link 2 14,982,991 15,005,214 RGD:9068941
G NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link 5 88,292,760 88,317,111 RGD:14298760
G NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 10 33,849,206 33,865,080 RGD:14298760
G NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 4 89,246,958 89,257,090 RGD:9068941
G NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 2 4,958,508 4,964,211 RGD:9068941
G NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link 13 206,111,337 206,123,987 RGD:14298760
G SNCA synuclein alpha JBrowse link 8 129,247,724 129,388,307 RGD:14298760
G TAZ tafazzin JBrowse link X 124,940,036 124,946,275 RGD:14298760
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5F1A ATP synthase F1 subunit alpha JBrowse link 1 95,738,789 95,750,835 RGD:14298760
G ATP5F1B ATP synthase F1 subunit beta JBrowse link 5 21,984,750 21,992,393 RGD:14298760
G ATP5F1C ATP synthase F1 subunit gamma JBrowse link 10 63,584,288 63,599,537 RGD:14298760
G ATP5F1D ATP synthase F1 subunit delta JBrowse link 2 77,216,430 77,219,301 RGD:14298760
G ATP5F1E ATP synthase F1 subunit epsilon JBrowse link 17 59,163,085 59,174,488 RGD:9068941
G ATP5ME ATP synthase membrane subunit e JBrowse link 8 112,092 113,526 RGD:9068941
G ATP5MF ATP synthase membrane subunit f JBrowse link 3 6,389,338 6,396,960 RGD:9068941
G ATP5MG ATP synthase membrane subunit g JBrowse link 9 45,706,449 45,716,541 RGD:9068941
G ATP5PB ATP synthase peripheral stalk-membrane subunit b JBrowse link 4 108,896,063 108,907,626 RGD:14298760
G ATP5PD ATP synthase peripheral stalk subunit d JBrowse link 12 6,241,467 6,247,344 RGD:9068941
G ATP5PF ATP synthase peripheral stalk subunit F6 JBrowse link 13 189,281,429 189,290,234 RGD:14298760
G ATP5PO ATP synthase peripheral stalk subunit OSCP JBrowse link 13 197,509,331 197,519,530 RGD:9068941
G ATP6 ATP synthase F0 subunit 6 JBrowse link MT 9,120 9,800 RGD:14298760
G COX5B mitochondrial cytochrome c oxidase subunit Vb JBrowse link 3 56,630,297 56,632,107 RGD:14298760
G CYC1 cytochrome c1 JBrowse link 4 606,510 608,991 RGD:14298760
G MT-ATP8 mitochondrially encoded ATP synthase membrane subunit 8 JBrowse link MT 8,959 9,162 RGD:9068941
G STOML2 stomatin like 2 JBrowse link 1 235,891,479 235,894,944 RGD:14298760
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFG1L AFG1 like ATPase JBrowse link 1 74,367,421 74,590,766 RGD:14298760
G COX4I1 cytochrome c oxidase subunit 4I1 JBrowse link 6 3,131,017 3,137,619 RGD:14298760
G COX4I2 cytochrome c oxidase subunit 4I2 JBrowse link 17 35,340,499 35,346,090 RGD:14298760
G COX5A cytochrome c oxidase subunit 5A JBrowse link 7 58,622,969 58,644,024 RGD:14298760
G COX5B mitochondrial cytochrome c oxidase subunit Vb JBrowse link 3 56,630,297 56,632,107 RGD:14298760
G COX6A1 cytochrome c oxidase subunit 6A1 JBrowse link 14 40,408,600 40,410,810 RGD:14298760
G COX6A2 cytochrome c oxidase subunit 6A2 JBrowse link 3 17,108,623 17,135,108 RGD:14298760
G COX7C cytochrome c oxidase subunit 7C JBrowse link 2 94,345,436 94,347,709 RGD:14298760
G CYCS cytochrome c, somatic JBrowse link 18 47,169,921 47,172,212 RGD:14298760
G LOC100158196 cytochrome c pseudogene JBrowse link 13 22,114,860 22,115,384 RGD:14298760
G LOC100519295 cytochrome c-like JBrowse link 2 72,500,149 72,500,463 RGD:14298760
G LOC100739590 cytochrome c pseudogene JBrowse link X 56,722,357 56,744,653 RGD:14298760
G LOC106507972 cytochrome c pseudogene JBrowse link 12 48,803,991 48,804,397 RGD:14298760
G MT-CO1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 6,511 8,055 RGD:14298760
G MT-CO3 mitochondrially encoded cytochrome c oxidase III JBrowse link MT 9,800 10,583 RGD:14298760
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BDNF brain derived neurotrophic factor JBrowse link 2 32,623,668 32,679,293 RGD:9068941
G COQ9 coenzyme Q9 JBrowse link 6 19,373,052 19,390,738 RGD:14298760
G DLD dihydrolipoamide dehydrogenase JBrowse link 9 107,642,129 107,668,443 RGD:14298760
G ND2 NADH dehydrogenase subunit 2 JBrowse link MT 5,087 6,128 RGD:14298760
G NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link 15 138,999,174 139,031,892 RGD:14298760
G NDUFA8 NADH:ubiquinone oxidoreductase subunit A8 JBrowse link 1 262,243,225 262,258,186 RGD:14298760
G NDUFAF1 NADH:ubiquinone oxidoreductase complex assembly factor 1 JBrowse link 1 129,968,480 129,993,534 RGD:14298760
G NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 10 33,849,206 33,865,080 RGD:14298760
G NDUFB8 NADH:ubiquinone oxidoreductase subunit B8 JBrowse link 14 111,626,827 111,633,548 RGD:14298760
G NDUFB9 NADH:ubiquinone oxidoreductase subunit B9 JBrowse link 4 15,105,305 15,113,281 RGD:14298760
G NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 9 12,486,488 12,492,507 RGD:14298760
G NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 4 89,246,958 89,257,090 RGD:14298760
G NDUFS6 NADH:ubiquinone oxidoreductase subunit S6 JBrowse link 16 78,993,909 79,000,001 RGD:14298760
G NDUFS8 NADH:ubiquinone oxidoreductase core subunit S8 JBrowse link 2 4,863,295 4,867,392 RGD:14298760
G NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 2 4,958,508 4,964,211 RGD:14298760
G NDUFV2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link 6 98,819,156 98,852,561 RGD:14298760
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SDHA succinate dehydrogenase complex flavoprotein subunit A JBrowse link 16 79,838,442 79,862,956 RGD:14298760
G SDHAF2 succinate dehydrogenase complex assembly factor 2 JBrowse link 2 10,074,965 10,088,185 RGD:14298760
G SDHC succinate dehydrogenase complex subunit C JBrowse link 4 89,135,410 89,169,164 RGD:14298760
G SDHD succinate dehydrogenase complex subunit D JBrowse link 9 39,790,654 39,803,602 RGD:14298760
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYC1 cytochrome c1 JBrowse link 4 606,510 608,991 RGD:14298760
G CYCS cytochrome c, somatic JBrowse link 18 47,169,921 47,172,212 RGD:14298760
G CYTB cytochrome b JBrowse link MT 15,342 16,481 RGD:14298760
G LOC100158196 cytochrome c pseudogene JBrowse link 13 22,114,860 22,115,384 RGD:14298760
G LOC100519295 cytochrome c-like JBrowse link 2 72,500,149 72,500,463 RGD:14298760
G LOC100524873 cytochrome b-c1 complex subunit 6, mitochondrial JBrowse link 6 165,123,915 165,134,375 RGD:14298760
G LOC100739590 cytochrome c pseudogene JBrowse link X 56,722,357 56,744,653 RGD:14298760
G LOC106507972 cytochrome c pseudogene JBrowse link 12 48,803,991 48,804,397 RGD:14298760
G MECP2 methyl-CpG binding protein 2 JBrowse link X 124,735,523 124,789,063 RGD:9068941
G UQCC3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 2 9,077,055 9,078,649 RGD:14298760
G UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X JBrowse link 14 46,783,340 46,786,140 RGD:14298760
G UQCRB ubiquinol-cytochrome c reductase binding protein JBrowse link 4 40,403,272 40,409,080 RGD:14298760
G UQCRC1 ubiquinol-cytochrome c reductase core protein 1 JBrowse link 13 31,298,449 31,308,719 RGD:14298760
G UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII JBrowse link 2 135,186,366 135,188,237 RGD:14298760
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 JBrowse link 11 24,011,530 24,087,156 RGD:9068941
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN3 actinin alpha 3 JBrowse link 2 5,860,386 5,873,779 RGD:9068941
G APOC3 apolipoprotein C3 JBrowse link 9 44,211,171 44,213,538 RGD:9068941
G MLXIPL MLX interacting protein like JBrowse link 3 10,898,675 10,934,257 RGD:14298760
G PDE12 phosphodiesterase 12 JBrowse link 13 39,395,517 39,402,653 RGD:14298760
G PDE2A phosphodiesterase 2A JBrowse link 9 7,136,637 7,227,966 RGD:9068941
G PPIF peptidylprolyl isomerase F JBrowse link 14 81,674,671 81,681,977 RGD:14298760
G RHOA ras homolog family member A JBrowse link 13 31,918,484 31,991,207 RGD:14298760
G TNF tumor necrosis factor JBrowse link 7 23,699,635 23,702,393 RGD:9068941
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100512926 cytochrome c oxidase assembly factor 6 homolog JBrowse link 14 56,751,142 56,758,956 RGD:9068941
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 16 47,338,239 47,348,385 RGD:14298760
G CDK1 cyclin dependent kinase 1 JBrowse link 14 64,233,945 64,255,290 RGD:14298760
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISCU iron-sulfur cluster assembly enzyme JBrowse link 14 42,216,103 42,222,570 RGD:14298760
G PARK7 Parkinsonism associated deglycase JBrowse link 6 68,629,327 68,645,147 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GADD45GIP1 GADD45G interacting protein 1 JBrowse link 2 66,087,421 66,089,578 RGD:9068941
G LEXM lymphocyte expansion molecule JBrowse link 6 157,532,139 157,552,542 RGD:9068941
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 4 12,455,141 12,460,360 RGD:9068941
G MYOG myogenin JBrowse link 9 113,783,233 113,785,312 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 3 18,402,781 18,404,411 RGD:14298760
G PGK1 phosphoglycerate kinase 1 JBrowse link X 62,187,472 62,210,321 RGD:14298760
G PGK2 phosphoglycerate kinase 2 JBrowse link 7 43,839,239 43,840,892 RGD:14298760
G VCP valosin containing protein JBrowse link 1 235,854,532 235,869,712 RGD:14298760
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATPSCKMT ATP synthase c subunit lysine N-methyltransferase JBrowse link 16 72,223,492 72,242,073 RGD:14298760
G DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 3 10,951,173 10,959,935 RGD:9068941
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCD1 ATP binding cassette subfamily D member 1 JBrowse link X 124,485,076 124,501,742 RGD:14298760
G AK4 adenylate kinase 4 JBrowse link 6 147,177,029 147,257,799 RGD:14298760
G ATP7A ATPase copper transporting alpha JBrowse link X 61,972,544 62,110,058 RGD:9068941
G C7H6orf125 uncharacterized protein C6orf125 homolog JBrowse link 7 29,902,089 29,929,802 RGD:14298760
G COX7A1 cytochrome c oxidase subunit 7A1 JBrowse link 6 45,519,225 45,520,721 RGD:14298760
G COX7A2 COX7A2 protein JBrowse link 1 90,696,746 90,703,407 RGD:14298760
G COX7A2L cytochrome c oxidase subunit 7A2 like JBrowse link 3 97,951,115 97,983,309 RGD:14298760
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 4 12,455,141 12,460,360 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:9068941
G SHMT2 serine hydroxymethyltransferase 2 JBrowse link 5 22,535,780 22,540,322 RGD:14298760
G SLC25A23 solute carrier family 25 member 23 JBrowse link 2 72,625,544 72,643,572 RGD:14298760
G SLC25A33 solute carrier family 25 member 33 JBrowse link 6 69,934,810 69,969,091 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16408
    metabolic process 10431
      ATP metabolic process 241
        oxidative phosphorylation 115
          ATP synthesis coupled electron transport + 64
          mitochondrial ATP synthesis coupled proton transport + 19
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 13
          regulation of oxidative phosphorylation + 34
Path 2
Term Annotations click to browse term
  biological_process 16408
    metabolic process 10431
      cellular metabolic process 9423
        phosphorus metabolic process 3031
          phosphate-containing compound metabolic process 3009
            phosphorylation 2255
              oxidative phosphorylation 115
                ATP synthesis coupled electron transport + 64
                mitochondrial ATP synthesis coupled proton transport + 19
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 13
                regulation of oxidative phosphorylation + 34
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.