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ONTOLOGY REPORT - ANNOTATIONS

Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation

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oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak2 adenylate kinase 2 ISO RGD PMID:18423391 RGD:5147997 NCBI chrNW_004624764:16,089,357...16,113,275 JBrowse link
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,411,933...10,413,969
Ensembl chrNW_004624747:10,412,012...10,413,969 		JBrowse link
G COX1 cytochrome c oxidase subunit I involved_in IEA UniProt GO_REF:0000041 NCBI chr MT:5,320...6,861 JBrowse link
G CUNH2orf69 chromosome unknown C2orf69 homolog involved_in ISO (PMID:33945503) UniProt PMID:33945503 NCBI chrNW_004624889:999,433...1,008,313
Ensembl chrNW_004624889:1,001,585...1,008,350 		JBrowse link
G Fxn frataxin acts_upstream_of_or_within ISO (PMID:17404227)
(PMID:16278235)		 MGI PMID:16278235 PMID:17404227 NCBI chrNW_004624736:4,027,054...4,047,881
Ensembl chrNW_004624736:4,027,354...4,047,854 		JBrowse link
G LOC101696752 cytochrome c oxidase subunit 8B, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624766:22,186,513...22,187,759 JBrowse link
G LOC101698437 cytochrome c oxidase subunit 6A1, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624747:13,227,169...13,230,271 JBrowse link
G LOC101705610 cytochrome c oxidase subunit 4 isoform 1, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624746:2,187,443...2,193,874
Ensembl chrNW_004624746:2,187,492...2,194,040 		JBrowse link
G LOC101706868 cytochrome c oxidase subunit 8A, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624767:22,295,594...22,298,699
Ensembl chrNW_004624767:22,295,594...22,298,701 		JBrowse link
G LOC101708302 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624758:7,683,865...7,695,371 JBrowse link
G LOC101713193 cytochrome c oxidase subunit 7C, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624743:6,224,040...6,226,980
Ensembl chrNW_004624743:6,223,835...6,229,258 		JBrowse link
G LOC101714003 cytochrome c oxidase subunit 4 isoform 2, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624741:852,104...863,660
Ensembl chrNW_004624741:850,551...861,313 		JBrowse link
G LOC101714403 cytochrome c oxidase subunit 5A, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624894:107,464...120,365
Ensembl chrNW_004624894:107,034...121,020 		JBrowse link
G LOC101715696 cytochrome c oxidase subunit 7B, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624836:3,063,775...3,069,063 JBrowse link
G LOC101716380 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624763:6,867,602...6,877,864
Ensembl chrNW_004624763:6,850,621...6,877,822 		JBrowse link
G LOC101720122 cytochrome c oxidase subunit 6A2, mitochondrial involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624782:14,432,226...14,432,818
Ensembl chrNW_004624782:14,432,226...14,432,814 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16805809) Ensembl
MGI		 PMID:16805809 GO_REF:0000107 NCBI chrNW_004624738:28,780,596...28,861,523
Ensembl chrNW_004624738:28,780,614...28,861,704 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in ISO (PMID:20888800) BHF-UCL PMID:20888800 NCBI chrNW_004624740:8,176,682...8,207,790
Ensembl chrNW_004624740:8,176,656...8,209,029 		JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in ISO (PMID:21278163) UniProt PMID:21278163 NCBI chrNW_004624875:154,600...163,740
Ensembl chrNW_004624875:155,073...163,027 		JBrowse link
aerobic electron transport chain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COX3 cytochrome c oxidase subunit III involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:8,604...9,387 JBrowse link
G Slc25a51 solute carrier family 25 member 51 involved_in
acts_upstream_of		 ISO (PMID:33087354)
(PMID:33262325)		 UniProt PMID:33087354 PMID:33262325 NCBI chrNW_004624825:3,999,541...4,019,801 JBrowse link
ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COX2 cytochrome c oxidase subunit II involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:7,007...7,690 JBrowse link
G ND4 NADH dehydrogenase subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:10,165...11,542 JBrowse link
G ND4L NADH dehydrogenase subunit 4L involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr MT:9,875...10,171 JBrowse link
G ND5 NADH dehydrogenase subunit 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr MT:11,740...13,551 JBrowse link
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624828:1,109,495...1,116,148
Ensembl chrNW_004624828:1,109,495...1,116,058 		JBrowse link
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624765:9,962,254...9,993,790
Ensembl chrNW_004624765:9,962,447...9,993,790 		JBrowse link
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bid BH3 interacting domain death agonist acts_upstream_of_or_within ISO (PMID:26219591) MGI PMID:26219591 NCBI chrNW_004624735:9,557,732...9,590,862
Ensembl chrNW_004624735:9,579,979...9,589,260 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:18635541) MGI PMID:18635541 NCBI chrNW_004624782:2,682,489...2,689,662
Ensembl chrNW_004624782:2,682,486...2,689,661 		JBrowse link
G Dguok deoxyguanosine kinase ISO RGD PMID:30404003 RGD:15039296 NCBI chrNW_004624749:29,494,866...29,560,887
Ensembl chrNW_004624749:29,516,229...29,561,220 		JBrowse link
G LOC101702099 cytochrome c oxidase assembly factor 6 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624775:15,942,940...15,945,964 JBrowse link
G Mtch2 mitochondrial carrier 2 acts_upstream_of_or_within ISO (PMID:26219591) MGI PMID:26219591 NCBI chrNW_004624767:1,199,367...1,218,425
Ensembl chrNW_004624767:1,199,291...1,221,123 		JBrowse link
G Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 involved_in ISO (PMID:24746669) CAFA PMID:24746669 NCBI chrNW_004624750:12,026,148...12,053,377 JBrowse link
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:37,223,046...37,235,144
Ensembl chrNW_004624736:37,223,153...37,235,027 		JBrowse link
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:172,543...189,031
Ensembl chrNW_004624794:172,707...185,073 		JBrowse link
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:18,934,063...18,938,652
Ensembl chrNW_004624767:18,929,879...18,939,242 		JBrowse link
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:27,777,507...27,786,939 JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within ISO (PMID:16260631) MGI PMID:16260631 NCBI chrNW_004624757:17,393,046...17,528,783
Ensembl chrNW_004624757:17,392,998...17,528,320 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:15304507) BHF-UCL PMID:15304507 NCBI chrNW_004624946:871,618...885,331
Ensembl chrNW_004624946:871,901...879,508 		JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in ISO (PMID:27323408) UniProt PMID:27323408 NCBI chrNW_004624780:13,769,419...14,031,477
Ensembl chrNW_004624780:13,771,341...14,038,146 		JBrowse link
G COX1 cytochrome c oxidase subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:5,320...6,861 JBrowse link
G COX3 cytochrome c oxidase subunit III involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:8,604...9,387 JBrowse link
G LOC101696752 cytochrome c oxidase subunit 8B, mitochondrial involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624766:22,186,513...22,187,759 JBrowse link
G LOC101698192 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:4,623,618...4,623,971 JBrowse link
G LOC101698437 cytochrome c oxidase subunit 6A1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:13,227,169...13,230,271 JBrowse link
G LOC101700356 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:30,503,860...30,504,779 JBrowse link
G LOC101704529 cytochrome c-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:6,372,352...6,373,935 JBrowse link
G LOC101704956 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:39,545,342...39,545,656 JBrowse link
G LOC101705610 cytochrome c oxidase subunit 4 isoform 1, mitochondrial involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:2,187,443...2,193,874
Ensembl chrNW_004624746:2,187,492...2,194,040 		JBrowse link
G LOC101706454 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:5,135,623...5,136,425 JBrowse link
G LOC101706868 cytochrome c oxidase subunit 8A, mitochondrial involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624767:22,295,594...22,298,699
Ensembl chrNW_004624767:22,295,594...22,298,701 		JBrowse link
G LOC101708302 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624758:7,683,865...7,695,371 JBrowse link
G LOC101711005 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624806:6,296,300...6,296,773 JBrowse link
G LOC101713105 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624856:6,689,258...6,689,591 JBrowse link
G LOC101713193 cytochrome c oxidase subunit 7C, mitochondrial involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624743:6,224,040...6,226,980
Ensembl chrNW_004624743:6,223,835...6,229,258 		JBrowse link
G LOC101714003 cytochrome c oxidase subunit 4 isoform 2, mitochondrial involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624741:852,104...863,660
Ensembl chrNW_004624741:850,551...861,313 		JBrowse link
G LOC101714403 cytochrome c oxidase subunit 5A, mitochondrial involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624894:107,464...120,365
Ensembl chrNW_004624894:107,034...121,020 		JBrowse link
G LOC101715151 cytochrome c oxidase subunit 7A1, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624794:10,392,028...10,393,728
Ensembl chrNW_004624794:10,392,028...10,393,670 		JBrowse link
G LOC101715696 cytochrome c oxidase subunit 7B, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624836:3,063,775...3,069,063 JBrowse link
G LOC101716380 cytochrome c oxidase subunit 6C involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624763:6,867,602...6,877,864
Ensembl chrNW_004624763:6,850,621...6,877,822 		JBrowse link
G LOC101716432 cytochrome c oxidase subunit 7A-related protein, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624738:24,058,426...24,065,764
Ensembl chrNW_004624738:23,975,788...24,066,011 		JBrowse link
G LOC101718508 cytochrome c, somatic involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10980192 GO_REF:0000118 RGD:2300408 NCBI chrNW_004624739:5,411,192...5,413,995
Ensembl chrNW_004624739:5,411,273...5,413,995 		JBrowse link
G LOC101720122 cytochrome c oxidase subunit 6A2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:14,432,226...14,432,818
Ensembl chrNW_004624782:14,432,226...14,432,814 		JBrowse link
G LOC101723434 uncharacterized LOC101723434 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624819:2,249,831...2,255,915
Ensembl chrNW_004624819:2,248,826...2,256,080 		JBrowse link
G LOC101724567 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624922:709,859...728,770 JBrowse link
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:15341590 RGD:1358393 NCBI chrNW_004624766:17,281,882...17,330,601
Ensembl chrNW_004624766:17,279,630...17,330,490 		JBrowse link
G Coq9 coenzyme Q9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23255162) Ensembl
MGI		 PMID:23255162 GO_REF:0000107 NCBI chrNW_004624746:28,614,589...28,630,774
Ensembl chrNW_004624746:28,615,215...28,630,667 		JBrowse link
G Dld dihydrolipoamide dehydrogenase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15009635) Ensembl
MGI		 PMID:15009635 GO_REF:0000107 NCBI chrNW_004624739:21,842,897...21,873,334
Ensembl chrNW_004624739:21,846,733...21,873,700 		JBrowse link
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 acts_upstream_of ISO (PMID:23530063) MGI PMID:23530063 NCBI chrNW_004624748:12,038,637...12,127,763
Ensembl chrNW_004624748:12,038,637...12,127,800 		JBrowse link
G ND2 NADH dehydrogenase subunit 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr MT:3,896...4,937 JBrowse link
G ND3 NADH dehydrogenase subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:9,456...9,801 JBrowse link
G ND4 NADH dehydrogenase subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:10,165...11,542 JBrowse link
G ND5 NADH dehydrogenase subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:11,740...13,551 JBrowse link
G ND6 NADH dehydrogenase subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr MT:13,548...14,078 JBrowse link
G Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24652937) InterPro
TreeGrafter
MGI
Ensembl		 PMID:24652937 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624847:4,371,264...4,412,334
Ensembl chrNW_004624847:4,370,570...4,412,393 		JBrowse link
G Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:1,109,495...1,116,148
Ensembl chrNW_004624828:1,109,495...1,116,058 		JBrowse link
G Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:13,131,760...13,148,001
Ensembl chrNW_004624760:13,131,769...13,149,487 		JBrowse link
G Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624804:8,532,281...8,560,396
Ensembl chrNW_004624804:8,533,456...8,560,521 		JBrowse link
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624736:37,223,046...37,235,144
Ensembl chrNW_004624736:37,223,153...37,235,027 		JBrowse link
G Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624831:195,552...200,458
Ensembl chrNW_004624831:191,625...200,860 		JBrowse link
G Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624735:30,660,652...30,667,395
Ensembl chrNW_004624735:30,659,030...30,667,372 		JBrowse link
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624863:1,071,170...1,084,002
Ensembl chrNW_004624863:1,071,049...1,083,802 		JBrowse link
G Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 involved_in ISO (PMID:31557978) UniProt PMID:31557978 NCBI chrNW_004624765:9,962,254...9,993,790
Ensembl chrNW_004624765:9,962,447...9,993,790 		JBrowse link
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624794:172,543...189,031
Ensembl chrNW_004624794:172,707...185,073 		JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:14729820), (PMID:30140060)
(MGI:6391555|PMID:31916679), (MGI:6505357|PMID:33148885)		 UniProt PMID:14729820 PMID:30140060 PMID:31916679 PMID:33148885 MGI:6391555 MGI:6505357 NCBI chrNW_004624767:1,238,953...1,243,945
Ensembl chrNW_004624767:1,237,261...1,244,031 		JBrowse link
G Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 involved_in ISO (PMID:17275378) UniProt PMID:17275378 NCBI chrNW_004624828:7,298,290...7,307,113
Ensembl chrNW_004624828:7,294,327...7,306,814 		JBrowse link
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624767:18,822,763...18,826,907
Ensembl chrNW_004624767:18,822,526...18,827,057 		JBrowse link
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624767:18,934,063...18,938,652
Ensembl chrNW_004624767:18,929,879...18,939,242 		JBrowse link
G Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:17,925,250...17,950,754 JBrowse link
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sdha succinate dehydrogenase complex flavoprotein subunit A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:54,778...90,457
Ensembl chrNW_004624751:54,779...90,447 		JBrowse link
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624926:792,172...802,838
Ensembl chrNW_004624926:792,173...801,954 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:7,241,770...7,252,016
Ensembl chrNW_004624784:7,241,836...7,251,916 		JBrowse link
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYTB cytochrome b involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr MT:14,149...15,283 JBrowse link
G LOC101698192 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:4,623,618...4,623,971 JBrowse link
G LOC101700356 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:30,503,860...30,504,779 JBrowse link
G LOC101700825 cytochrome c1, heme protein, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:12,724,670...12,727,035
Ensembl chrNW_004624735:12,724,670...12,727,120 		JBrowse link
G LOC101704529 cytochrome c-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:6,372,352...6,373,935 JBrowse link
G LOC101704956 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:39,545,342...39,545,656 JBrowse link
G LOC101706454 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:5,135,623...5,136,425 JBrowse link
G LOC101707358 cytochrome b-c1 complex subunit 7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624763:3,550,916...3,555,430
Ensembl chrNW_004624763:3,550,959...3,555,346 		JBrowse link
G LOC101708594 cytochrome b-c1 complex subunit Rieske, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:4,428,339...4,435,363
Ensembl chrNW_004624794:4,430,723...4,435,457 		JBrowse link
G LOC101708617 cytochrome b-c1 complex subunit 9 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624747:6,080,725...6,083,065
Ensembl chrNW_004624747:6,080,740...6,082,926 		JBrowse link
G LOC101711005 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624806:6,296,300...6,296,773 JBrowse link
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
G LOC101713105 cytochrome c involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624856:6,689,258...6,689,591 JBrowse link
G LOC101718508 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:5,411,192...5,413,995
Ensembl chrNW_004624739:5,411,273...5,413,995 		JBrowse link
G LOC101718608 cytochrome b-c1 complex subunit 7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624789:3,983,529...3,983,980 JBrowse link
G LOC101718708 cytochrome b-c1 complex subunit 6, mitochondrial involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624906:2,217,142...2,226,075
Ensembl chrNW_004624906:2,217,180...2,226,075 		JBrowse link
G LOC101719627 cytochrome b-c1 complex subunit 1, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16782889) Ensembl
MGI		 PMID:16782889 GO_REF:0000107 NCBI chrNW_004624730:2,603,301...2,613,105
Ensembl chrNW_004624730:2,603,089...2,613,828 		JBrowse link
G LOC101724106 ubiquinol-cytochrome-c reductase complex assembly factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,177,498...1,178,171
Ensembl chrNW_004624926:1,177,499...1,178,168 		JBrowse link
G LOC101724567 cytochrome c, somatic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624922:709,859...728,770 JBrowse link
G LOC101726493 cytochrome b-c1 complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624828:7,123,371...7,127,341
Ensembl chrNW_004624828:7,123,392...7,127,337 		JBrowse link
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 acts_upstream_of_or_within ISO (PMID:23530063) MGI PMID:23530063 NCBI chrNW_004624748:12,038,637...12,127,763
Ensembl chrNW_004624748:12,038,637...12,127,800 		JBrowse link
negative regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in ISO (MGI:3778600|PMID:18178581), (MGI:5554485|PMID:24234654) UniProt PMID:18178581 PMID:24234654 MGI:3778600 MGI:5554485 NCBI chrNW_004624767:19,844,996...19,859,274
Ensembl chrNW_004624767:19,844,884...19,858,950 		JBrowse link
G Apoc3 apolipoprotein C3 ISO RGD PMID:11177239 RGD:1599177 NCBI chrNW_004624784:12,244,565...12,246,790
Ensembl chrNW_004624784:12,244,646...12,246,790 		JBrowse link
G Mlxipl MLX interacting protein like involved_in ISO (PMID:19995986) BHF-UCL PMID:19995986 NCBI chrNW_004624740:14,150,425...14,187,687
Ensembl chrNW_004624740:14,168,238...14,187,264 		JBrowse link
G Pde2a phosphodiesterase 2A involved_in ISO (MGI:5294502|PMID:21724846) UniProt PMID:21724846 MGI:5294502 NCBI chrNW_004624817:4,269,422...4,367,576
Ensembl chrNW_004624817:4,269,347...4,369,486 		JBrowse link
G Ppif peptidylprolyl isomerase F involved_in ISO (MGI:5487522|PMID:21281446) UniProt PMID:21281446 MGI:5487522 NCBI chrNW_004624754:12,336,474...12,342,687
Ensembl chrNW_004624754:12,336,427...12,342,687 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:8903396 RGD:14995471 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101702099 cytochrome c oxidase assembly factor 6 homolog involved_in ISO (PMID:26160915) UniProt PMID:26160915 NCBI chrNW_004624775:15,942,940...15,945,964 JBrowse link
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk1 cyclin dependent kinase 1 involved_in ISO (PMID:24746669) CAFA PMID:24746669 NCBI chrNW_004624791:2,891,239...2,915,001 JBrowse link
G Chchd2 coiled-coil-helix-coiled-coil-helix domain containing 2 acts_upstream_of ISO (PMID:28589937) FlyBase PMID:28589937 NCBI chrNW_004624740:8,279,416...8,283,730
Ensembl chrNW_004624740:8,278,078...8,283,657 		JBrowse link
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Iscu iron-sulfur cluster assembly enzyme involved_in ISO (PMID:20436681) ARUK-UCL PMID:20436681 NCBI chrNW_004624747:11,808,789...11,815,269
Ensembl chrNW_004624747:11,808,640...11,816,400 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (MGI:5582165|PMID:19822128)
(PMID:19822128)		 ParkinsonsUK-UCL PMID:19822128 MGI:5582165 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042 		JBrowse link
G Pink1 PTEN induced kinase 1 acts_upstream_of_or_within ISO (PMID:24652937) MGI PMID:24652937 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
positive regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap2 ciliary microtubule associated protein 2 acts_upstream_of_or_within ISO (PMID:25883318) MGI PMID:25883318 NCBI chrNW_004624862:5,029,117...5,048,318
Ensembl chrNW_004624862:5,038,584...5,048,371 		JBrowse link
G Gadd45gip1 GADD45G interacting protein 1 acts_upstream_of_or_within ISO (PMID:25883318) MGI PMID:25883318 NCBI chrNW_004624901:523,744...526,240
Ensembl chrNW_004624901:523,771...526,448 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:18414044 RGD:10059611 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Myog myogenin ISO RGD PMID:10225962 RGD:9686132 NCBI chrNW_004624807:7,742,926...7,753,149
Ensembl chrNW_004624807:7,749,852...7,753,336 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:30451898) UniProt PMID:30451898 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
proton motive force-driven mitochondrial ATP synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004624778:9,773,365...9,784,564
Ensembl chrNW_004624778:9,773,064...9,784,533 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:11,400,288...11,408,785
Ensembl chrNW_004624802:11,399,474...11,409,700 		JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624775:2,745,556...2,765,269
Ensembl chrNW_004624775:2,744,731...2,768,373 		JBrowse link
G Atp5f1d ATP synthase F1 subunit delta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,429,915...7,432,898
Ensembl chrNW_004624828:7,429,915...7,432,562 		JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:25,319,949...25,323,819
Ensembl chrNW_004624741:25,319,949...25,323,769 		JBrowse link
G Atp5me ATP synthase membrane subunit e involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004624755:26,368,644...26,369,719
Ensembl chrNW_004624755:26,368,755...26,369,665 		JBrowse link
G Atp5mf ATP synthase membrane subunit f involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:32,878,119...32,885,907
Ensembl chrNW_004624740:32,878,119...32,885,814 		JBrowse link
G Atp5mg ATP synthase membrane subunit g involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004624784:13,794,610...13,802,056
Ensembl chrNW_004624784:13,794,685...13,802,056 		JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004624772:7,167,074...7,178,756
Ensembl chrNW_004624772:7,167,147...7,179,273 		JBrowse link
G Atp5pd ATP synthase peripheral stalk subunit d involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:4,857,689...4,863,249
Ensembl chrNW_004624801:4,857,692...4,861,430 		JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:12110673) UniProt PMID:12110673 NCBI chrNW_004624745:13,779,610...13,787,525
Ensembl chrNW_004624745:13,779,610...13,787,610 		JBrowse link
G Atp5po ATP synthase peripheral stalk subunit OSCP involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:22,064,438...22,074,753
Ensembl chrNW_004624745:22,064,441...22,074,773 		JBrowse link
G LOC101702202 ATP synthase subunit f, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624877:4,039,262...4,039,655 JBrowse link
G LOC101708211 ATP synthase subunit f, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:18,251,479...18,251,769 JBrowse link
G Stoml2 stomatin like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:294,781...298,312
Ensembl chrNW_004624915:294,777...298,278 		JBrowse link
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antkmt adenine nucleotide translocase lysine methyltransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:1,528,289...1,531,333
Ensembl chrNW_004624913:1,529,628...1,531,333 		JBrowse link
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:7,598,307...7,614,962
Ensembl chrNW_004624751:7,598,929...7,607,293 		JBrowse link
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:14,131,362...14,133,580 JBrowse link
regulation of oxidative phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in ISO (MGI:5500881|PMID:23604518) UniProt PMID:23604518 MGI:5500881 NCBI chrNW_004624946:421,113...439,961
Ensembl chrNW_004624946:421,132...440,075 		JBrowse link
G Ak4 adenylate kinase 4 involved_in ISO (PMID:26980435) UniProt PMID:26980435 NCBI chrNW_004624742:29,547,237...29,574,160 JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:8550574) MGI PMID:8550574 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G LOC101706296 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101706352 ubiquinol-cytochrome-c reductase complex assembly factor 2 involved_in ISO (MGI:5520038|PMID:22363741)
(PMID:22363741)		 UniProt PMID:22363741 MGI:5520038 NCBI chrNW_004624754:23,215,920...23,227,895
Ensembl chrNW_004624754:23,215,962...23,227,895 		JBrowse link
G LOC101715151 cytochrome c oxidase subunit 7A1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:10,392,028...10,393,728
Ensembl chrNW_004624794:10,392,028...10,393,670 		JBrowse link
G LOC101716432 cytochrome c oxidase subunit 7A-related protein, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:24,058,426...24,065,764
Ensembl chrNW_004624738:23,975,788...24,066,011 		JBrowse link
G LOC101723434 uncharacterized LOC101723434 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:2,249,831...2,255,915
Ensembl chrNW_004624819:2,248,826...2,256,080 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:22629444 RGD:7240532 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253 		JBrowse link
G Slc25a23 solute carrier family 25 member 23 acts_upstream_of_or_within ISO (PMID:23344948) MGI PMID:23344948 NCBI chrNW_004624828:3,558,034...3,572,426
Ensembl chrNW_004624828:3,559,813...3,572,395 		JBrowse link
G Slc25a33 solute carrier family 25 member 33 involved_in ISO (PMID:20453889) UniProt PMID:20453889 NCBI chrNW_004624818:2,838,700...2,868,672
Ensembl chrNW_004624818:2,835,649...2,868,692 		JBrowse link
G Tmem135 transmembrane protein 135 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33064130) Ensembl
MGI		 PMID:33064130 GO_REF:0000107 NCBI chrNW_004624845:2,710,422...2,972,260
Ensembl chrNW_004624845:2,710,354...2,972,290 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15225
    cellular process 14346
      cellular metabolic process 8100
        generation of precursor metabolites and energy 433
          energy derivation by oxidation of organic compounds 313
            cellular respiration 222
              aerobic respiration 172
                oxidative phosphorylation 128
                  ATP synthesis coupled electron transport + 80
                  aerobic electron transport chain + 68
                  negative regulation of oxidative phosphorylation + 8
                  positive regulation of oxidative phosphorylation 6
                  proton motive force-driven mitochondrial ATP synthesis + 18
                  regulation of oxidative phosphorylation + 27
paths to the root