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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AK2 adenylate kinase 2 JBrowse link 2 68,342,769 68,371,769 RGD:9068941
G CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 26 28,742,466 28,744,370 RGD:9068941
G COX5A cytochrome c oxidase subunit Va JBrowse link 30 37,955,203 37,968,111 RGD:13508589
G COX6A2 cytochrome c oxidase subunit 6A2 JBrowse link 6 16,807,094 16,807,763 RGD:13508589
G COX7A1 cytochrome c oxidase subunit 7A1 JBrowse link 1 116,547,179 116,548,917 RGD:13508589
G COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) JBrowse link 18 53,048,902 53,050,528 RGD:13508589
G FXN frataxin JBrowse link 1 88,288,566 88,311,228 RGD:13508589
G MSH2 mutS homolog 2 JBrowse link 10 49,517,448 49,594,001 RGD:13508589
G NIPSNAP2 nipsnap homolog 2 JBrowse link 6 451,568 485,354 RGD:13508589
G SURF1 SURF1 cytochrome c oxidase assembly factor JBrowse link 9 49,786,562 49,790,004 RGD:9068941
G TEFM transcription elongation factor, mitochondrial JBrowse link 9 40,860,850 40,868,020 RGD:13508589
ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MT-CO2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,034 7,717 RGD:13508589
G MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 JBrowse link MT 10,201 11,578 RGD:13508589
G MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 JBrowse link MT 11,778 13,598 RGD:13508589
G ND4L NADH dehydrogenase subunit 4L JBrowse link MT 9,911 10,207 RGD:13508589
G NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 JBrowse link 20 52,892,784 52,902,007 RGD:13508589
G NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 JBrowse link 37 14,680,908 14,713,838 RGD:13508589
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BID BH3 interacting domain death agonist JBrowse link 27 45,344,304 45,355,735 RGD:9068941
G COQ7 coenzyme Q7, hydroxylase JBrowse link 6 25,912,936 25,922,123 RGD:9068941
G DGUOK deoxyguanosine kinase JBrowse link 17 49,107,085 49,139,366 RGD:9068941
G LOC100684565 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 pseudogene JBrowse link 22 3,525,991 3,526,519 RGD:13508589
G MTCH2 mitochondrial carrier 2 JBrowse link 18 42,023,484 42,045,331 RGD:9068941
G NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link 15 34,971,944 34,996,458 RGD:13508589
G NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 11 49,821,998 49,833,624 RGD:13508589
G NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 38 21,271,603 21,281,140 RGD:9068941
G NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 18 49,882,844 49,888,448 RGD:9068941
G NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link 31 37,118,201 37,131,035 RGD:9068941
G SNCA synuclein alpha JBrowse link 32 12,915,871 13,079,338 RGD:9068941
G TAZ tafazzin JBrowse link X 122,111,608 122,125,714 RGD:9068941
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5F1A ATP synthase F1 subunit alpha JBrowse link 7 45,118,188 45,127,048 RGD:13508589
G ATP5F1B ATP synthase F1 subunit beta JBrowse link 10 870,405 876,937 RGD:13508589
G ATP5F1C ATP synthase F1 subunit gamma JBrowse link 2 28,306,857 28,325,149 RGD:13508589
G ATP5F1D ATP synthase F1 subunit delta JBrowse link 20 57,547,575 57,550,110 RGD:13508589
G ATP5F1E ATP synthase F1 subunit epsilon JBrowse link 24 43,770,646 43,772,278 RGD:9068941
G ATP5ME ATP synthase membrane subunit e JBrowse link X 108,285,208 108,285,423 RGD:9068941
G ATP5MG ATP synthase membrane subunit g JBrowse link 5 15,329,060 15,336,344 RGD:9068941
G ATP5PF ATP synthase peripheral stalk subunit F6 JBrowse link 31 21,207,080 21,212,220 RGD:9068941
G ATP5PO ATP synthase peripheral stalk subunit OSCP JBrowse link 31 29,370,861 29,380,512 RGD:9068941
G COX5B cytochrome c oxidase subunit 5B JBrowse link 10 44,979,654 44,991,620 RGD:13508589
G CYC1 cytochrome c1 JBrowse link 13 37,590,919 37,593,239 RGD:13508589
G LOC100683871 ATP synthase subunit d, mitochondrial-like JBrowse link 8 52,583,012 52,583,497 RGD:9068941
G LOC102151856 ATP synthase subunit f, mitochondrial JBrowse link 15 49,438,852 49,439,253 RGD:9068941
G LOC479901 ATP synthase F(0) complex subunit B1, mitochondrial JBrowse link 6 40,613,504 40,626,068 RGD:13508589
G MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,964 8,644 RGD:9068941
G MT-ATP8 mitochondrially encoded ATP synthase membrane subunit 8 JBrowse link MT 7,803 8,006 RGD:13508589
G STOML2 stomatin like 2 JBrowse link 11 51,675,963 51,679,313 RGD:13508589
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFG1L AFG1 like ATPase JBrowse link 12 65,312,922 65,516,207 RGD:13508589
G COX4I1 cytochrome c oxidase subunit 4I1 JBrowse link 5 66,883,730 66,891,734 RGD:13508589
G COX4I2 cytochrome c oxidase subunit 4I2 JBrowse link 24 21,122,033 21,128,368 RGD:13508589
G COX5B cytochrome c oxidase subunit 5B JBrowse link 10 44,979,654 44,991,620 RGD:13508589
G CYCS cytochrome c, somatic JBrowse link 14 38,579,446 38,581,983 RGD:13508589
G GATC glutamyl-tRNA amidotransferase subunit C JBrowse link 26 16,352,826 16,362,298 RGD:13508589
G LOC100855551 cytochrome c oxidase subunit 6A1, mitochondrial pseudogene JBrowse link X 20,636,931 20,637,266 RGD:13508589
G MT-CO1 mitochondrially encoded cytochrome c oxidase I JBrowse link MT 5,349 6,893 RGD:13508589
G MT-CO3 mitochondrially encoded cytochrome c oxidase III JBrowse link MT 8,644 9,427 RGD:13508589
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BDNF brain derived neurotrophic factor JBrowse link 21 48,191,580 48,243,699 RGD:9068941
G COQ9 coenzyme Q9 JBrowse link 2 58,964,221 58,977,589 RGD:9068941
G DLD dihydrolipoamide dehydrogenase JBrowse link 18 12,703,340 12,734,408 RGD:13508589
G LOC100684565 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 pseudogene JBrowse link 22 3,525,991 3,526,519 RGD:13508589
G MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 JBrowse link MT 3,914 4,955 RGD:13508589
G NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link 25 49,920,748 49,968,966 RGD:13508589
G NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 JBrowse link 20 52,892,784 52,902,007 RGD:13508589
G NDUFA8 NADH:ubiquinone oxidoreductase subunit A8 JBrowse link 9 60,404,486 60,418,234 RGD:13508589
G NDUFAF1 NADH:ubiquinone oxidoreductase complex assembly factor 1 JBrowse link 30 8,436,301 8,452,239 RGD:13508589
G NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 11 49,821,998 49,833,624 RGD:13508589
G NDUFB8 NADH:ubiquinone oxidoreductase subunit B8 JBrowse link 28 13,249,067 13,253,670 RGD:13508589
G NDUFB9 NADH:ubiquinone oxidoreductase subunit B9 JBrowse link 13 22,624,929 22,632,310 RGD:13508589
G NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 21 20,748,452 20,758,236 RGD:13508589
G NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 38 21,271,603 21,281,140 RGD:13508589
G NDUFS6 NADH:ubiquinone oxidoreductase subunit S6 JBrowse link 34 10,989,857 10,999,232 RGD:13508589
G NDUFS8 NADH:ubiquinone oxidoreductase core subunit S8 JBrowse link 18 49,796,558 49,800,805 RGD:13508589
G NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 18 49,882,844 49,888,448 RGD:13508589
G NDUFV2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link 7 75,150,293 75,184,084 RGD:13508589
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SDHA succinate dehydrogenase complex flavoprotein subunit A JBrowse link 34 11,935,684 11,965,094 RGD:13508589
G SDHAF2 succinate dehydrogenase complex assembly factor 2 JBrowse link 18 54,970,987 54,986,676 RGD:13508589
G SDHC succinate dehydrogenase complex subunit C JBrowse link 38 21,162,850 21,200,429 RGD:13508589
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYC1 cytochrome c1 JBrowse link 13 37,590,919 37,593,239 RGD:13508589
G CYCS cytochrome c, somatic JBrowse link 14 38,579,446 38,581,983 RGD:13508589
G LOC477944 cytochrome b-c1 complex subunit 7 JBrowse link 29 40,742,410 40,748,044 RGD:13508589
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:13508589
G MT-CYB mitochondrially encoded cytochrome b JBrowse link MT 14,183 15,322 RGD:9068941
G UQCC3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 18 53,984,203 53,985,496 RGD:13508589
G UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X JBrowse link 26 22,953,336 22,955,569 RGD:13508589
G UQCRC1 ubiquinol-cytochrome c reductase core protein 1 JBrowse link 20 40,507,767 40,515,854 RGD:13508589
G UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 JBrowse link 1 122,035,193 122,038,032 RGD:13508589
G UQCRH ubiquinol-cytochrome c reductase hinge protein JBrowse link 15 14,082,954 14,092,690 RGD:13508589
G UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII JBrowse link 11 21,148,964 21,150,573 RGD:13508589
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 JBrowse link 22 7,746,726 7,825,635 RGD:9068941
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN3 actinin alpha 3 JBrowse link 18 50,787,353 50,801,036 RGD:13508589
G APOC3 apolipoprotein C3 JBrowse link 5 16,744,423 16,746,992 RGD:9068941
G MLXIPL MLX interacting protein like JBrowse link 6 6,617,398 6,652,201 RGD:13508589
G PDE12 phosphodiesterase 12 JBrowse link 20 32,884,819 32,890,995 RGD:13508589
G PDE2A phosphodiesterase 2A JBrowse link 21 25,542,030 25,635,661 RGD:9068941
G PPIF peptidylprolyl isomerase F JBrowse link 4 29,074,806 29,080,487 RGD:9068941
G RHOA ras homolog family member A JBrowse link 20 39,824,552 39,888,089 RGD:13508589
G TNF tumor necrosis factor JBrowse link 12 1,074,561 1,076,425 RGD:9068941
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G COA6 cytochrome c oxidase assembly factor 6 JBrowse link 4 5,447,252 5,454,500 RGD:9068941
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 2 54,256,957 54,264,749 RGD:9068941
G CDK1 cyclin dependent kinase 1 JBrowse link 4 12,884,106 12,899,203 RGD:13508589
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISCU iron-sulfur cluster assembly enzyme JBrowse link 26 18,300,800 18,307,668 RGD:9068941
G PARK7 Parkinsonism associated deglycase JBrowse link 5 61,576,219 61,592,325 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GADD45GIP1 GADD45G interacting protein 1 JBrowse link 20 49,241,956 49,243,838 RGD:9068941
G LEXM lymphocyte expansion molecule JBrowse link 5 54,330,982 54,356,524 RGD:9068941
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 13 25,200,772 25,205,309 RGD:9068941
G MYOG myogenin JBrowse link 7 112,116 114,604 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 6 18,222,367 18,224,015 RGD:13508589
G PGK1 phosphoglycerate kinase 1 JBrowse link X 60,374,743 60,396,244 RGD:13508589
G VCP valosin containing protein JBrowse link 11 51,636,986 51,651,749 RGD:13508589
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATPSCKMT ATP synthase c subunit lysine N-methyltransferase JBrowse link 34 4,049,015 4,242,294 RGD:9068941
G DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 6 6,595,233 6,596,440 RGD:13508589
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCD1 ATP binding cassette subfamily D member 1 JBrowse link X 121,545,690 121,564,117 RGD:13508589
G AK4 adenylate kinase 4 JBrowse link 5 45,055,294 45,119,595 RGD:13508589
G ATP7A ATPase copper transporting alpha JBrowse link X 60,203,336 60,356,525 RGD:9068941
G COX7A2L cytochrome c oxidase subunit 7A2 like JBrowse link 17 33,954,882 33,976,749 RGD:13508589
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 13 25,200,772 25,205,309 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G SHMT2 serine hydroxymethyltransferase 2 JBrowse link 10 1,357,347 1,362,511 RGD:13508589
G SLC25A23 solute carrier family 25 member 23 JBrowse link 20 53,722,841 53,736,205 RGD:9068941
G SLC25A33 solute carrier family 25 member 33 JBrowse link 5 62,790,116 62,825,644 RGD:13508589
G UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 JBrowse link 12 3,050,329 3,063,831 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16043
    metabolic process 10497
      ATP metabolic process 266
        oxidative phosphorylation 111
          ATP synthesis coupled electron transport + 60
          mitochondrial ATP synthesis coupled proton transport + 19
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 12
          regulation of oxidative phosphorylation + 31
Path 2
Term Annotations click to browse term
  biological_process 16043
    metabolic process 10497
      cellular metabolic process 9493
        phosphorus metabolic process 3032
          phosphate-containing compound metabolic process 3011
            phosphorylation 2244
              oxidative phosphorylation 111
                ATP synthesis coupled electron transport + 60
                mitochondrial ATP synthesis coupled proton transport + 19
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 12
                regulation of oxidative phosphorylation + 31
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.