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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak2 adenylate kinase 2 JBrowse link NW_004955452 11,254,853 11,275,587 RGD:9068941
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link NW_004955455 8,472,833 8,474,745 RGD:9068941
G Fxn frataxin JBrowse link NW_004955434 3,983,225 4,008,324 RGD:9068941
G Msh2 mutS homolog 2 JBrowse link NW_004955441 14,188,315 14,247,608 RGD:9068941
G Nipsnap2 nipsnap homolog 2 JBrowse link NW_004955456 8,176,171 8,195,576 RGD:9068941
G Surf1 surfeit 1 JBrowse link NW_004955513 2,707,877 2,711,606 RGD:9068941
G Tefm transcription elongation factor, mitochondrial JBrowse link NW_004955481 7,034,564 7,042,653 RGD:9068941
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bid BH3 interacting domain death agonist JBrowse link NW_004955454 5,776,656 5,785,500 RGD:9068941
G Coq7 coenzyme Q7, hydroxylase JBrowse link NW_004955442 3,026,458 3,033,582 RGD:9068941
G Dguok deoxyguanosine kinase JBrowse link NW_004955424 11,739,904 11,773,884 RGD:9068941
G Mtch2 mitochondrial carrier 2 JBrowse link NW_004955422 672,301 690,989 RGD:9068941
G Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link NW_004955405 31,607,182 31,621,538 RGD:9068941
G Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link NW_004955472 3,054,026 3,064,530 RGD:9068941
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link NW_004955468 12,961,873 12,971,278 RGD:9068941
G Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link NW_004955422 17,876,496 17,881,773 RGD:9068941
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link NW_004955407 39,029,943 39,039,425 RGD:9068941
G Snca synuclein alpha JBrowse link NW_004955405 854,011 962,741 RGD:9068941
G Taz tafazzin JBrowse link NW_004955580 915,668 921,703 RGD:9068941
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link NW_004955402 31,652,226 31,662,114 RGD:9068941
G Atp5f1b ATP synthase F1 subunit beta JBrowse link NW_004955458 4,188,167 4,195,575 RGD:9068941
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link NW_004955421 24,234,473 24,253,640 RGD:9068941
G Atp5f1d ATP synthase F1 subunit delta JBrowse link NW_004955495 6,664,394 6,666,693 RGD:9068941
G Atp5f1e ATP synthase F1 subunit epsilon JBrowse link NW_004955445 563,642 567,865 RGD:9068941
G Atp5me ATP synthase membrane subunit e JBrowse link NW_004955404 11,420,964 11,421,171 RGD:9068941
G Atp5mf ATP synthase membrane subunit f JBrowse link NW_004955460 15,129,651 15,136,722 RGD:9068941
G Atp5mg ATP synthase membrane subunit g JBrowse link NW_004955412 19,555,736 19,563,094 RGD:9068941
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link NW_004955435 14,940,502 14,952,423 RGD:9068941
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link NW_004955553 1,893,767 1,897,175 RGD:9068941
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link NW_004955407 25,601,253 25,609,933 RGD:9068941
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link NW_004955407 33,288,194 33,298,817 RGD:9068941
G Stoml2 stomatin like 2 JBrowse link NW_004955472 1,079,261 1,082,632 RGD:9068941
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afg1l AFG1 like ATPase JBrowse link NW_004955411 33,386,568 33,617,721 RGD:9068941
G LOC102023786 cytochrome c, somatic JBrowse link NW_004955410 27,086,405 27,089,255 RGD:9068941
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain derived neurotrophic factor JBrowse link NW_004955476 6,773,244 6,822,201 RGD:9068941
G Coq9 coenzyme Q9 JBrowse link NW_004955433 15,081,390 15,094,441 RGD:9068941
G Dld dihydrolipoamide dehydrogenase JBrowse link NW_004955410 12,212,981 12,238,561 RGD:9068941
G Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link NW_004955542 1,329,802 1,370,109 RGD:9068941
G Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link NW_004955402 2,802,366 2,818,049 RGD:9068941
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 JBrowse link NW_004955511 6,125,966 6,139,098 RGD:9068941
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102005965 cytochrome b-c1 complex subunit 1, mitochondrial JBrowse link NW_004955532 685,315 691,286 RGD:9068941
G LOC102013363 ubiquinol-cytochrome-c reductase complex assembly factor 3 JBrowse link NW_004955599 540,598 541,643 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004955580 674,014 737,586 RGD:9068941
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 JBrowse link NW_004955518 941,610 1,016,097 RGD:9068941
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link NW_004955422 18,799,372 18,812,458 RGD:9068941
G Apoc3 apolipoprotein C3 JBrowse link NW_004955412 18,165,667 18,168,015 RGD:9068941
G Mlxipl MLX interacting protein like JBrowse link NW_004955456 14,096,530 14,116,687 RGD:9068941
G Pde12 phosphodiesterase 12 JBrowse link NW_004955430 7,272,911 7,277,726 RGD:9068941
G Pde2a phosphodiesterase 2A JBrowse link NW_004955414 18,765,591 18,826,717 RGD:9068941
G Ppif peptidylprolyl isomerase F JBrowse link NW_004955437 13,295,766 13,301,918 RGD:9068941
G Rhoa ras homolog family member A JBrowse link NW_004955532 1,300,821 1,347,453 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004955437 117,267 119,899 RGD:9068941
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102028200 cytochrome c oxidase assembly factor 6 homolog JBrowse link NW_004955492 5,316,594 5,324,913 RGD:9068941
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link NW_004955446 140,661 149,500 RGD:9068941
G Cdk1 cyclin dependent kinase 1 JBrowse link NW_004955425 14,210,681 14,226,474 RGD:9068941
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iscu iron-sulfur cluster assembly enzyme JBrowse link NW_004955455 9,833,924 9,840,547 RGD:9068941
G Park7 Parkinsonism associated deglycase JBrowse link NW_004955486 4,974,130 4,985,927 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004955452 1,171,115 1,186,338 RGD:9068941
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gadd45gip1 GADD45G interacting protein 1 JBrowse link NW_004955415 31,997,679 32,000,009 RGD:9068941
G Lexm lymphocyte expansion molecule JBrowse link NW_004955464 4,571,161 4,589,879 RGD:9068941
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link NW_004955461 2,714,022 2,718,872 RGD:9068941
G Myog myogenin JBrowse link NW_004955406 39,099,044 39,102,479 RGD:9068941
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link NW_004955493 6,746,380 6,747,763 RGD:9068941
G Vcp valosin containing protein JBrowse link NW_004955472 1,111,649 1,124,076 RGD:9068941
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase JBrowse link NW_004955426 116,223 131,798 RGD:9068941
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link NW_004955456 14,057,517 14,058,729 RGD:9068941
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link NW_004955580 459,715 475,363 RGD:9068941
G Ak4 adenylate kinase 4 JBrowse link NW_004955423 25,395,086 25,402,324 RGD:9068941
G Atp7a ATPase copper transporting alpha JBrowse link NW_004955557 1,355,471 1,515,725 RGD:9068941
G LOC102009757 ubiquinol-cytochrome-c reductase complex assembly factor 2 JBrowse link NW_004955437 2,107,475 2,119,892 RGD:9068941
G LOC102015775 cytochrome c oxidase subunit 7A-related protein, mitochondrial JBrowse link NW_004955441 9,732,168 9,743,052 RGD:9068941
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link NW_004955461 2,714,022 2,718,872 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004955452 1,171,115 1,186,338 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
G Slc25a23 solute carrier family 25 member 23 JBrowse link NW_004955495 3,155,024 3,171,279 RGD:9068941
G Slc25a33 solute carrier family 25 member 33 JBrowse link NW_004955486 3,905,001 3,921,501 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11826
    metabolic process 7570
      ATP metabolic process 183
        oxidative phosphorylation 73
          ATP synthesis coupled electron transport + 29
          mitochondrial ATP synthesis coupled proton transport + 15
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 11
          regulation of oxidative phosphorylation + 30
Path 2
Term Annotations click to browse term
  biological_process 11826
    metabolic process 7570
      cellular metabolic process 6992
        phosphorus metabolic process 2361
          phosphate-containing compound metabolic process 2350
            phosphorylation 1779
              oxidative phosphorylation 73
                ATP synthesis coupled electron transport + 29
                mitochondrial ATP synthesis coupled proton transport + 15
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 11
                regulation of oxidative phosphorylation + 30
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.