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ONTOLOGY REPORT - ANNOTATIONS


Term:oxidative phosphorylation
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Accession:GO:0006119 term browser browse the term
Definition:The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
Synonyms:exact_synonym: respiratory-chain phosphorylation
 xref: Wikipedia:Oxidative_phosphorylation


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oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AK2 adenylate kinase 2 JBrowse link 1 33,480,074 33,508,697 RGD:9068941
G CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 22 22,606,921 22,608,605 RGD:9068941
G FXN frataxin JBrowse link 9 67,800,579 67,865,945 RGD:9068941
G LOC100983451 surfeit locus protein 1 JBrowse link 9 133,085,739 133,088,911 RGD:9068941
G MSH2 mutS homolog 2 JBrowse link 2A 48,447,207 48,525,638 RGD:9068941
G NIPSNAP2 nipsnap homolog 2 JBrowse link 7 57,002,007 57,036,333 RGD:9068941
G TEFM transcription elongation factor, mitochondrial JBrowse link 17 25,423,955 25,432,198 RGD:9068941
mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BID BH3 interacting domain death agonist JBrowse link 22 16,594,186 16,633,695 RGD:9068941
G COQ7 coenzyme Q7, hydroxylase JBrowse link 16 19,172,134 19,184,158 RGD:9068941
G DGUOK deoxyguanosine kinase JBrowse link 2A 75,510,768 75,542,563 RGD:9068941
G MTCH2 mitochondrial carrier 2 JBrowse link 11 48,115,773 48,146,312 RGD:9068941
G NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 JBrowse link 12 95,953,485 95,989,618 RGD:9068941
G NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 JBrowse link 9 33,137,836 33,157,006 RGD:9068941
G NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 JBrowse link 1 140,526,690 140,538,705 RGD:9068941
G NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 JBrowse link 11 66,276,638 66,282,320 RGD:9068941
G NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link 21 42,516,295 42,531,750 RGD:9068941
G SNCA synuclein alpha JBrowse link 4 92,737,608 92,851,720 RGD:9068941
G TAZ tafazzin JBrowse link X 153,725,299 153,734,046 RGD:9068941
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5F1A ATP synthase F1 subunit alpha JBrowse link 18 42,904,136 42,918,626 RGD:9068941
G ATP5F1B ATP synthase F1 subunit beta JBrowse link 12 32,519,749 32,527,753 RGD:9068941
G ATP5F1C ATP synthase F1 subunit gamma JBrowse link 10 7,801,433 7,821,097 RGD:9068941
G ATP5F1D ATP synthase F1 subunit delta JBrowse link 19 1,224,055 1,228,283 RGD:9068941
G ATP5F1E ATP synthase F1 subunit epsilon JBrowse link 20 56,740,739 56,744,429 RGD:9068941
G ATP5MF ATP synthase membrane subunit f JBrowse link 7 104,933,594 104,941,922 RGD:9068941
G ATP5MG ATP synthase membrane subunit g JBrowse link 11 117,167,404 117,175,813 RGD:9068941
G ATP5PB ATP synthase peripheral stalk-membrane subunit b JBrowse link 1 126,224,308 126,236,596 RGD:9068941
G ATP5PD ATP synthase peripheral stalk subunit d JBrowse link 17 74,541,363 74,549,700 RGD:9068941
G ATP5PF ATP synthase peripheral stalk subunit F6 JBrowse link 21 25,526,252 25,537,363 RGD:9068941
G ATP5PO ATP synthase peripheral stalk subunit OSCP JBrowse link 21 33,640,394 33,652,891 RGD:9068941
G STOML2 stomatin like 2 JBrowse link 9 35,755,790 35,759,091 RGD:9068941
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFG1L AFG1 like ATPase JBrowse link 6 109,956,704 110,370,685 RGD:9068941
G LOC100986481 cytochrome c JBrowse link 7 25,396,013 25,398,549 RGD:9068941
mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BDNF brain derived neurotrophic factor JBrowse link 11 27,520,306 27,589,239 RGD:9068941
G COQ9 coenzyme Q9 JBrowse link 16 56,856,401 56,870,260 RGD:9068941
G DLD dihydrolipoamide dehydrogenase JBrowse link 7 112,593,934 112,623,629 RGD:9068941
G NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 JBrowse link 2B 246,022,168 246,085,828 RGD:9068941
G NDUFV2 NADH:ubiquinone oxidoreductase core subunit V2 JBrowse link 18 7,433,167 7,464,884 RGD:9068941
mitochondrial electron transport, succinate to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SDHAF2 succinate dehydrogenase complex assembly factor 2 JBrowse link 11 60,093,656 60,110,288 RGD:9068941
mitochondrial electron transport, ubiquinol to cytochrome c term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100977575 cytochrome b-c1 complex subunit 1, mitochondrial JBrowse link 3 49,602,770 49,613,717 RGD:9068941
G LOC100993556 ubiquinol-cytochrome-c reductase complex assembly factor 3 JBrowse link 11 61,381,400 61,382,684 RGD:9068941
negative regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 RGD:9068941
negative regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN3 actinin alpha 3 JBrowse link 11 65,229,043 65,245,429 RGD:9068941
G APOC3 apolipoprotein C3 JBrowse link 11 115,600,416 115,603,460 RGD:9068941
G MLXIPL MLX interacting protein like JBrowse link 7 80,745,765 80,776,156 RGD:9068941
G PDE12 phosphodiesterase 12 JBrowse link 3 58,695,951 58,703,257 RGD:9068941
G PDE2A phosphodiesterase 2A JBrowse link 11 70,875,552 70,975,322 RGD:9068941
G PPIF peptidylprolyl isomerase F JBrowse link 10 78,521,996 78,530,211 RGD:9068941
G RHOA ras homolog family member A JBrowse link 3 50,362,698 50,584,600 RGD:9068941
G TNF tumor necrosis factor JBrowse link 6 32,126,618 32,129,389 RGD:9068941
plasma membrane ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100973340 uncharacterized LOC100973340 JBrowse link 1 214,935,609 214,944,496 RGD:9068941
positive regulation of mitochondrial ATP synthesis coupled electron transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 5 46,394,362 46,405,332 RGD:9068941
G CDK1 cyclin dependent kinase 1 JBrowse link 10 59,647,993 59,664,434 RGD:9068941
positive regulation of mitochondrial electron transport, NADH to ubiquinone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISCU iron-sulfur cluster assembly enzyme JBrowse link 12 109,529,162 109,537,053 RGD:9068941
G PARK7 Parkinsonism associated deglycase JBrowse link 1 7,969,265 7,993,271 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,627,364 20,646,377 RGD:9068941
positive regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GADD45GIP1 GADD45G interacting protein 1 JBrowse link 19 13,258,995 13,262,059 RGD:9068941
G LEXM lymphocyte expansion molecule JBrowse link 1 55,670,773 55,707,376 RGD:9068941
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 8 127,130,877 127,136,861 RGD:9068941
G MYOG myogenin JBrowse link 1 182,979,700 182,982,607 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 16 29,015,155 29,016,987 RGD:9068941
G VCP valosin containing protein JBrowse link 9 35,712,937 35,729,588 RGD:9068941
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATPSCKMT ATP synthase c subunit lysine N-methyltransferase JBrowse link 5 10,400,569 10,424,130 RGD:9068941
G DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 7 80,833,897 80,836,428 RGD:9068941
regulation of oxidative phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCD1 ATP binding cassette subfamily D member 1 JBrowse link X 153,162,412 153,182,424 RGD:9068941
G AK4 adenylate kinase 4 JBrowse link 1 66,283,102 66,367,146 RGD:9068941
G ATP7A ATPase copper transporting alpha JBrowse link X 77,205,579 77,342,762 RGD:9068941
G LOC100968761 cytochrome c oxidase subunit 7A-related protein, mitochondrial JBrowse link 2A 43,299,759 43,319,617 RGD:9068941
G LOC100982351 ubiquinol-cytochrome-c reductase complex assembly factor 2 JBrowse link 6 34,379,212 34,393,373 RGD:9068941
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 8 127,130,877 127,136,861 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,627,364 20,646,377 RGD:9068941
G SHMT2 serine hydroxymethyltransferase 2 JBrowse link 12 31,944,787 31,950,138 RGD:9068941
G SLC25A23 solute carrier family 25 member 23 JBrowse link 19 6,388,937 6,410,481 RGD:9068941
G SLC25A33 solute carrier family 25 member 33 JBrowse link 1 9,493,787 9,574,549 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12491
    metabolic process 7938
      ATP metabolic process 190
        oxidative phosphorylation 71
          ATP synthesis coupled electron transport + 28
          mitochondrial ATP synthesis coupled proton transport + 14
          negative regulation of oxidative phosphorylation + 9
          positive regulation of oxidative phosphorylation + 11
          regulation of oxidative phosphorylation + 30
Path 2
Term Annotations click to browse term
  biological_process 12491
    metabolic process 7938
      cellular metabolic process 7296
        phosphorus metabolic process 2431
          phosphate-containing compound metabolic process 2420
            phosphorylation 1832
              oxidative phosphorylation 71
                ATP synthesis coupled electron transport + 28
                mitochondrial ATP synthesis coupled proton transport + 14
                negative regulation of oxidative phosphorylation + 9
                positive regulation of oxidative phosphorylation + 11
                regulation of oxidative phosphorylation + 30
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.