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ONTOLOGY REPORT - ANNOTATIONS


Term:isocitrate metabolic process
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Accession:GO:0006102 term browser browse the term
Definition:The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle.
Synonyms:exact_synonym: isocitrate metabolism



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isocitrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4933405O20Rikl RIKEN cDNA 4933405O20 gene like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:100,300,241...100,301,711 JBrowse link
G Aco2 aconitase 2 IDA RGD PMID:14674759 PMID:9712727 RGD:2306852, RGD:2306877 NCBI chr 7:113,385,677...113,428,794
Ensembl chr 7:113,385,646...113,428,261
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 involved_in IDA
ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:10521434), (PMID:19935646), (PMID:20171178)
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
UniProt
RGD
InterPro
TreeGrafter
GO_Central
PMID:10521434 PMID:19935646 PMID:20171178 PMID:17447164 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118, RGD:1624966 NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708
JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 involved_in ISS
IEA
GO_REF:0000024
GO_REF:0000002
GO_REF:0000118
UniProt
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000024 GO_REF:0000118 NCBI chr 1:134,038,644...134,057,969
Ensembl chr 1:134,029,772...134,058,025
JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 8:54,971,694...54,991,085
Ensembl chr 8:54,971,740...54,991,084
JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:117,481,845...117,486,909
Ensembl chr 3:117,481,845...117,486,982
JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma involved_in ISO
ISS
IEA
IBA
(PMID:2605193)
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
RGD
UniProt
TreeGrafter
GO_Central
PMID:2605193 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:151,515,244...151,524,175
Ensembl chr  X:151,515,247...151,524,171
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      small molecule metabolic process 1938
        alcohol metabolic process 395
          secondary alcohol metabolic process 173
            isocitrate metabolic process 7
Path 2
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      cellular metabolic process 10300
        organic acid metabolic process 1075
          oxoacid metabolic process 1057
            carboxylic acid metabolic process 1038
              tricarboxylic acid metabolic process 18
                isocitrate metabolic process 7
paths to the root