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ONTOLOGY REPORT - ANNOTATIONS


Term:gluconeogenesis
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Accession:GO:0006094 term browser browse the term
Definition:The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
Synonyms:exact_synonym: glucose biosynthesis;   glucose biosynthetic process
 xref: MetaCyc:GLUCONEO-PWY;   Wikipedia:Gluconeogenesis


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gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldoa aldolase, fructose-bisphosphate A JBrowse link NW_004955493 6,904,931 6,910,682 RGD:9068941
G Aldob aldolase, fructose-bisphosphate B JBrowse link NW_004955419 24,377,427 24,389,909 RGD:9068941
G Aldoc aldolase, fructose-bisphosphate C JBrowse link NW_004955481 4,576,913 4,580,999 RGD:9068941
G Atf3 activating transcription factor 3 JBrowse link NW_004955406 4,875,672 4,889,173 RGD:9068941
G Atf4 activating transcription factor 4 JBrowse link NW_004955413 25,406,589 25,408,727 RGD:9068941
G Crtc2 CREB regulated transcription coactivator 2 JBrowse link NW_004955545 542,916 554,675 RGD:9068941
G Cry1 cryptochrome circadian regulator 1 JBrowse link NW_004955405 40,878,227 40,941,664 RGD:9068941
G Eno1 enolase 1 JBrowse link NW_004955486 4,275,371 4,287,152 RGD:9068941
G Eno2 enolase 2 JBrowse link NW_004955413 4,498,625 4,506,769 RGD:9068941
G Eno3 enolase 3 JBrowse link NW_004955467 10,363,154 10,368,261 RGD:9068941
G Fbp1 fructose-bisphosphatase 1 JBrowse link NW_004955422 21,537,337 21,569,174 RGD:9068941
G Fbp2 fructose-bisphosphatase 2 JBrowse link NW_004955422 21,508,906 21,530,296 RGD:9068941
G G6pc glucose-6-phosphatase catalytic subunit JBrowse link NW_004955451 16,672,512 16,680,001 RGD:9068941
G G6pc2 glucose-6-phosphatase catalytic subunit 2 JBrowse link NW_004955449 5,519,541 5,525,310 RGD:9068941
G G6pc3 glucose-6-phosphatase catalytic subunit 3 JBrowse link NW_004955451 17,219,763 17,221,889 RGD:9068941
G Gapdh glyceraldehyde-3-phosphate dehydrogenase JBrowse link NW_004955413 4,162,467 4,166,783 RGD:9068941
G Gapdhs glyceraldehyde-3-phosphate dehydrogenase, spermatogenic JBrowse link NW_004955468 4,757,080 4,773,675 RGD:9068941
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
G Gpd1 glycerol-3-phosphate dehydrogenase 1 JBrowse link NW_004955547 676,661 683,906 RGD:9068941
G Gpd2 glycerol-3-phosphate dehydrogenase 2 JBrowse link NW_004955449 16,695,855 16,804,184 RGD:9068941
G Gpi glucose-6-phosphate isomerase JBrowse link NW_004955468 3,980,999 4,007,553 RGD:9068941
G Mdh1 malate dehydrogenase 1 JBrowse link NW_004955424 20,707,765 20,723,493 RGD:9068941
G Mdh2 malate dehydrogenase 2 JBrowse link NW_004955456 14,819,406 14,833,547 RGD:9068941
G Pc pyruvate carboxylase JBrowse link NW_004955422 18,421,100 18,536,591 RGD:9068941
G Pck1 phosphoenolpyruvate carboxykinase 1 JBrowse link NW_004955445 1,909,012 1,914,032 RGD:9068941
G Pck2 phosphoenolpyruvate carboxykinase 2, mitochondrial JBrowse link NW_004955409 36,288,402 36,296,761 RGD:9068941
G Per2 period circadian regulator 2 JBrowse link NW_004955542 2,331,547 2,369,011 RGD:9068941
G Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 JBrowse link NW_004955475 2,279,390 2,343,881 RGD:9068941
G Pgam1 phosphoglycerate mutase 1 JBrowse link NW_004955507 3,562,513 3,571,400 RGD:9068941
G Pgam2 phosphoglycerate mutase 2 JBrowse link NW_004955456 7,909,891 7,912,116 RGD:9068941
G Pgk1 phosphoglycerate kinase 1 JBrowse link NW_004955557 1,566,534 1,584,799 RGD:9068941
G Pgk2 phosphoglycerate kinase 2 JBrowse link NW_004955411 8,216,432 8,218,065 RGD:9068941
G Pgm1 phosphoglucomutase 1 JBrowse link NW_004955423 26,408,775 26,437,527 RGD:9068941
G Ppargc1a PPARG coactivator 1 alpha JBrowse link NW_004955480 543,397 1,188,376 RGD:9068941
G Rbp4 retinol binding protein 4 JBrowse link NW_004955507 112,342 120,050 RGD:9068941
G Sds serine dehydratase JBrowse link NW_004955482 9,646,523 9,653,471 RGD:9068941
G Slc25a1 solute carrier family 25 member 1 JBrowse link NW_004955442 18,804,319 18,807,353 RGD:9068941
G Slc25a10 solute carrier family 25 member 10 JBrowse link NW_004955506 1,389,798 1,396,670 RGD:9068941
G Slc25a11 solute carrier family 25 member 11 JBrowse link NW_004955467 10,349,378 10,352,649 RGD:9068941
G Slc25a12 solute carrier family 25 member 12 JBrowse link NW_004955449 3,093,603 3,182,513 RGD:9068941
G Slc25a13 solute carrier family 25 member 13 JBrowse link NW_004955432 12,685,253 12,788,307 RGD:9068941
G Slc37a4 solute carrier family 37 member 4 JBrowse link NW_004955412 20,133,652 20,140,134 RGD:9068941
G Slc39a14 solute carrier family 39 member 14 JBrowse link NW_004955403 45,828,247 45,867,309 RGD:9068941
G Tpi1 triosephosphate isomerase 1 JBrowse link NW_004955413 4,467,615 4,471,594 RGD:9068941
negative regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link NW_004955420 20,911,181 20,922,992 RGD:9068941
G C1qtnf12 C1q and TNF related 12 JBrowse link NW_004955486 9,541,466 9,545,231 RGD:9068941
G C1qtnf3 C1q and TNF related 3 JBrowse link NW_004955426 19,588,637 19,606,557 RGD:9068941
G Clk2 CDC like kinase 2 JBrowse link NW_004955545 1,716,294 1,727,187 RGD:9068941
G Cry1 cryptochrome circadian regulator 1 JBrowse link NW_004955405 40,878,227 40,941,664 RGD:9068941
G Ep300 E1A binding protein p300 JBrowse link NW_004955413 26,647,553 26,727,875 RGD:9068941
G Erfe erythroferrone JBrowse link NW_004955542 2,408,504 2,415,522 RGD:9068941
G Fam3a FAM3 metabolism regulating signaling molecule A JBrowse link NW_004955580 1,025,481 1,036,752 RGD:9068941
G Fam3c FAM3 metabolism regulating signaling molecule C JBrowse link NW_004955479 3,086,380 3,128,612 RGD:9068941
G Gck glucokinase JBrowse link NW_004955456 7,784,269 7,838,260 RGD:9068941
G Ins insulin JBrowse link NW_004955422 13,909,408 13,910,419 RGD:9068941
G Lepr leptin receptor JBrowse link NW_004955423 25,108,897 25,185,315 RGD:9068941
G Maea macrophage erythroblast attacher, E3 ubiquitin ligase JBrowse link NW_004955514 689,867 722,779 RGD:9068941
G Mst1 macrophage stimulating 1 JBrowse link NW_004955532 1,590,685 1,595,655 RGD:9068941
G Pgp phosphoglycolate phosphatase JBrowse link NW_004955442 15,051,149 15,053,123 RGD:9068941
G Serpina12 serpin family A member 12 JBrowse link NW_004955438 17,826,596 17,849,341 RGD:9068941
G Sik1 salt inducible kinase 1 JBrowse link NW_004955407 38,739,062 38,749,293 RGD:9068941
G Soga1 suppressor of glucose, autophagy associated 1 JBrowse link NW_004955422 24,803,116 24,865,427 RGD:9068941
positive regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arpp19 cAMP regulated phosphoprotein 19 JBrowse link NW_004955409 2,354,988 2,369,846 RGD:9068941
G Ddb1 damage specific DNA binding protein 1 JBrowse link NW_004955511 6,209,777 6,233,594 RGD:9068941
G Dgat2 diacylglycerol O-acyltransferase 2 JBrowse link NW_004955414 16,059,781 16,089,727 RGD:9068941
G Foxo1 forkhead box O1 JBrowse link NW_004955431 5,797,359 5,890,758 RGD:9068941
G Gcg glucagon JBrowse link NW_004955449 11,708,152 11,716,429 RGD:9068941
G Gpt glutamic--pyruvic transaminase JBrowse link NW_004955454 3,127,997 3,132,459 RGD:9068941
G Kat2a lysine acetyltransferase 2A JBrowse link NW_004955451 16,192,228 16,197,103 RGD:9068941
G Kat2b lysine acetyltransferase 2B JBrowse link NW_004955430 12,109,493 12,196,102 RGD:9068941
G Ppara peroxisome proliferator activated receptor alpha JBrowse link NW_004955413 30,306,563 30,366,245 RGD:9068941
G Ppargc1a PPARG coactivator 1 alpha JBrowse link NW_004955480 543,397 1,188,376 RGD:9068941
G Ppp4r3b protein phosphatase 4 regulatory subunit 3B JBrowse link NW_004955424 27,461,919 27,520,649 RGD:9068941
G Ptpn2 protein tyrosine phosphatase non-receptor type 2 JBrowse link NW_004955402 771,410 846,671 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004955425 20,280,725 20,307,663 RGD:9068941
G Wdr5 WD repeat domain 5 JBrowse link NW_004955513 3,198,655 3,213,754 RGD:9068941
regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link NW_004955423 17,173,648 17,199,189 RGD:9068941
G Dgkq diacylglycerol kinase theta JBrowse link NW_004955514 452,548 475,240 RGD:9068941
G Fbp1 fructose-bisphosphatase 1 JBrowse link NW_004955422 21,537,337 21,569,174 RGD:9068941
G Gnmt glycine N-methyltransferase JBrowse link NW_004955437 8,944,288 8,946,642 RGD:9068941
G Lep leptin JBrowse link NW_004955479 9,266,604 9,276,568 RGD:9068941
G Nln neurolysin JBrowse link NW_004955446 3,258,278 3,374,337 RGD:9068941
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link NW_004955475 11,062,258 11,112,252 RGD:9068941
G Pdk2 pyruvate dehydrogenase kinase 2 JBrowse link NW_004955451 11,547,660 11,559,266 RGD:9068941
G Ranbp2 RAN binding protein 2 JBrowse link NW_004955470 12,180,426 12,247,737 RGD:9068941
G Sdhaf3 succinate dehydrogenase complex assembly factor 3 JBrowse link NW_004955432 13,512,594 13,586,984 RGD:9068941
G Selenos selenoprotein S JBrowse link NW_004955416 28,152,984 28,162,173 RGD:9068941
G Sesn2 sestrin 2 JBrowse link NW_004955452 7,392,644 7,417,204 RGD:9068941
G Sirt7 sirtuin 7 JBrowse link NW_004955506 1,252,271 1,258,728 RGD:9068941
G Slc35b4 solute carrier family 35 member B4 JBrowse link NW_004955410 33,695,985 33,728,749 RGD:9068941
G Usp7 ubiquitin specific peptidase 7 JBrowse link NW_004955442 9,316,022 9,355,751 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14568
    metabolic process 9956
      biosynthetic process 5481
        small molecule biosynthetic process 661
          monosaccharide biosynthetic process 97
            hexose biosynthetic process 91
              gluconeogenesis 89
                negative regulation of gluconeogenesis 18
                positive regulation of gluconeogenesis 14
                regulation of gluconeogenesis + 47
Path 2
Term Annotations click to browse term
  biological_process 14568
    metabolic process 9956
      primary metabolic process 9117
        carbohydrate metabolic process 584
          monosaccharide metabolic process 268
            hexose metabolic process 246
              glucose metabolic process 210
                gluconeogenesis 89
                  negative regulation of gluconeogenesis 18
                  positive regulation of gluconeogenesis 14
                  regulation of gluconeogenesis + 47
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.