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ONTOLOGY REPORT - ANNOTATIONS

Term:aldehyde metabolic process
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Accession:GO:0006081 term browser browse the term
Definition:The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.
Synonyms:exact_synonym: aldehyde metabolism;   alkanal metabolic process;   alkanal metabolism


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aldehyde metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in
acts_upstream_of_or_within		 ISO (PMID:3466164)
(PMID:10514444)		 RGD PMID:3466164 PMID:10514444 NCBI chr 2:226,948,717...226,966,747
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Aldh3a1 aldehyde dehydrogenase 3 family, member A1 involved_in ISO
IBA
IEA
ISS		 (PMID:1737758)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024		 RGD
GO_Central
InterPro
UniProt		 PMID:1737758 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr10:45,892,993...45,902,680
Ensembl chr10:45,892,924...45,902,681 		JBrowse link
G Aldh3a2 aldehyde dehydrogenase 3 family, member A2 involved_in ISO
IBA
IEA		 (PMID:9133646)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:9133646 GO_REF:0000002 GO_REF:0000033 NCBI chr10:45,928,313...45,949,366
Ensembl chr10:45,908,524...45,949,281 		JBrowse link
G Aldh3b1 aldehyde dehydrogenase 3 family, member B1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:201,145,309...201,162,675
Ensembl chr 1:201,145,309...201,163,921 		JBrowse link
G Aldh3b2 aldehyde dehydrogenase 3 family, member B2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:201,250,260...201,264,699
Ensembl chr 1:201,253,157...201,264,705 		JBrowse link
G Aldh3b2-ps1 aldehyde dehydrogenase 3 family, member B2, pseudogene 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:201,226,907...201,244,192 JBrowse link
G Aldh3b2l1 aldehyde dehydrogenase 3 family, member B2 like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:201,228,414...201,250,204
Ensembl chr 1:201,187,962...201,250,204 		JBrowse link
G Aldh3b3 aldehyde dehydrogenase 3 family, member B3 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:201,193,832...201,201,666
Ensembl chr 1:201,187,962...201,250,204 		JBrowse link
G Aldh3b3l-ps1 aldehyde dehydrogenase 3 family, member B3-like, pseudogene 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:201,200,291...201,218,456 JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in ISO
ISS		 (PMID:30914451), (PMID:8645224)
GO_REF:0000024		 RGD
UniProt		 PMID:8645224 PMID:30914451 GO_REF:0000024 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568 		JBrowse link
G ENSRNOG00000069460 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:201,229,244...201,232,059 JBrowse link
acetaldehyde metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member IMP RGD PMID:11535626 RGD:15036815 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IEP RGD PMID:9918814 RGD:2298880 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
aldehyde catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000002
(PMID:15769935)		 InterPro
RGD		 PMID:15769935 GO_REF:0000002 NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674 		JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member involved_in ISO
ISS		 (PMID:20062057), (PMID:27521998)
GO_REF:0000024		 RGD
UniProt		 PMID:20062057 PMID:27521998 GO_REF:0000024 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521 		JBrowse link
G Aldh3b1 aldehyde dehydrogenase 3 family, member B1 acts_upstream_of_or_within ISO (PMID:20699116) RGD PMID:20699116 NCBI chr 1:201,145,309...201,162,675
Ensembl chr 1:201,145,309...201,163,921 		JBrowse link
aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium voltage-gated channel subunit alpha1 H involved_in IMP
IEA
ISO		 PMID:19342457
GO_REF:0000107
(PMID:19342457)		 Ensembl
RGD		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr10:14,390,104...14,448,204
Ensembl chr10:14,390,113...14,448,376 		JBrowse link
G Cyp11b1 cytochrome P450, family 11, subfamily b, polypeptide 1 involved_in IMP
IBA		 PMID:19342457
GO_REF:0000033		 GO_Central PMID:19342457 GO_REF:0000033, RGD:4891166 NCBI chr 7:106,772,597...106,780,536
Ensembl chr 7:106,718,274...106,779,278 		JBrowse link
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:19342457), (PMID:2256920)		 GO_Central
RGD		 PMID:2256920 PMID:19342457 PMID:11832364 GO_REF:0000033, RGD:727991 NCBI chr 7:106,838,590...106,845,004
Ensembl chr 7:106,838,590...106,845,004 		JBrowse link
G Cyp11b3 cytochrome P450, family 11, subfamily b, polypeptide 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:1741400), (PMID:19342457), (PMID:2256920), (PMID:23322723)
(PMID:1686470), (PMID:8645611)		 RGD PMID:1686470 PMID:1741400 PMID:2256920 PMID:8645611 PMID:19342457 More... NCBI chr 7:106,808,559...106,814,048
Ensembl chr 7:106,808,559...106,814,048 		JBrowse link
aldosterone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in ISO MGI:3693642 (PMID:16868309) RGD PMID:16868309 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Scnn1b sodium channel epithelial 1 subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:28567665)		 Ensembl
RGD		 PMID:28567665 GO_REF:0000107 NCBI chr 1:176,430,063...176,484,451
Ensembl chr 1:176,430,103...176,484,451 		JBrowse link
formaldehyde biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm3a lysine demethylase 3A involved_in ISO
IEA		 (PMID:16603237)
GO_REF:0000107		 RGD
Ensembl		 PMID:16603237 GO_REF:0000107 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
formaldehyde catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07062298.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:166,688,924...166,693,523 JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:226,948,717...226,966,747
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000002
MGI:2180100 (PMID:10358022)		 GO_Central
InterPro
RGD		 PMID:10358022 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:226,975,184...226,987,591
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Esd esterase D involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:50,043,634...50,063,134
Ensembl chr15:50,043,632...50,063,144 		JBrowse link
formaldehyde metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase 3 family, member A2 IDA RGD PMID:1453005 RGD:1357171 NCBI chr10:45,928,313...45,949,366
Ensembl chr10:45,908,524...45,949,281 		JBrowse link
fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B involved_in IEA
ISO		 GO_REF:0000107
MGI:4951216 (PMID:29533924)		 Ensembl
RGD		 PMID:29533924 GO_REF:0000107 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Khk ketohexokinase involved_in ISO MGI:4398729 (PMID:23813872), (PMID:24022321), (PMID:27465991) RGD PMID:23813872 PMID:24022321 PMID:27465991 NCBI chr 6:25,445,298...25,455,834
Ensembl chr 6:25,445,300...25,455,717 		JBrowse link
G Tkfc triokinase and FMN cyclase involved_in IEA
ISO		 GO_REF:0000107
MGI:6471029 (PMID:32818435)		 Ensembl
RGD		 PMID:32818435 GO_REF:0000107 NCBI chr 1:207,238,230...207,253,035
Ensembl chr 1:207,236,557...207,252,737 		JBrowse link
glyceraldehyde-3-phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in ISO MGI:2182390 (PMID:11792850) RGD PMID:11792850 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Slc25a10 solute carrier family 25 member 10 involved_in ISO (PMID:19825180) RGD PMID:19825180 NCBI chr10:105,765,598...105,775,159
Ensembl chr10:105,765,372...105,773,556 		JBrowse link
G Tkt transketolase involved_in ISO
IEA		 (PMID:9611778)
GO_REF:0000107		 RGD
Ensembl		 PMID:9611778 GO_REF:0000107 NCBI chr16:5,723,764...5,748,702
Ensembl chr16:5,723,762...5,748,698 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:18562316)		 UniProt
GO_Central
RGD		 PMID:18562316 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
G Tpi1l1 triosephosphate isomerase 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:23,647,760...23,654,967
Ensembl chr 8:23,647,764...23,655,504 		JBrowse link
glyceraldehyde-3-phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taldo1 transaldolase 1 IDA RGD PMID:8477719 RGD:1641803 NCBI chr 1:196,493,634...196,503,965
Ensembl chr 1:196,493,589...196,503,974 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in ISO (MGI:3054313|PMID:15155459)
(PMID:15155459)		 RGD PMID:15155459 MGI:3054313 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
glyoxal catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
glyoxal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO
IBA		 (PMID:22523093)
GO_REF:0000033
(MGI:5582151|PMID:22523093)		 RGD
GO_Central		 PMID:22523093 GO_REF:0000033 MGI:5582151 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
glyoxylate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in ISO (PMID:22198249) RGD PMID:22198249 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in ISO
IBA		 (PMID:20018850)
GO_REF:0000033		 RGD
GO_Central		 PMID:20018850 GO_REF:0000033 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO
IBA		 (PMID:20797690)
GO_REF:0000033		 RGD
GO_Central		 PMID:20797690 GO_REF:0000033 NCBI chr 1:240,856,991...240,884,243
Ensembl chr 1:240,857,126...240,884,568 		JBrowse link
glyoxylate cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708 		JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:134,038,644...134,057,969
Ensembl chr 1:134,029,772...134,058,025 		JBrowse link
glyoxylate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:3526219 (PMID:17110443)
(PMID:12777626), (PMID:3709805)		 UniProt
RGD		 PMID:3709805 PMID:12777626 PMID:17110443 GO_REF:0000024 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Grhpr glyoxylate and hydroxypyruvate reductase involved_in ISO (PMID:10484776), (PMID:10524214) RGD PMID:10484776 PMID:10524214 NCBI chr 5:59,234,179...59,243,614
Ensembl chr 5:59,234,192...59,243,603 		JBrowse link
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO (PMID:21998747) RGD PMID:21998747 NCBI chr 1:240,856,991...240,884,243
Ensembl chr 1:240,857,126...240,884,568 		JBrowse link
G Hyi hydroxypyruvate isomerase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:131,894,575...131,897,709
Ensembl chr 5:131,894,598...131,897,251 		JBrowse link
G Mgat4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:39,673,427...39,786,747
Ensembl chr 9:39,673,430...39,766,890 		JBrowse link
guanine deglycation, methylglyoxal removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28596309)		 UniProt
Ensembl
RGD		 PMID:28596309 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
hexadecanal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase 3 family, member A2 involved_in ISO
IEA
ISS		 (PMID:25047030)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:25047030 GO_REF:0000024 GO_REF:0000107 NCBI chr10:45,928,313...45,949,366
Ensembl chr10:45,908,524...45,949,281 		JBrowse link
methylglyoxal biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldoa aldolase, fructose-bisphosphate A IMP RGD PMID:21890532 RGD:13673877 NCBI chr 1:181,402,275...181,407,476
Ensembl chr 1:181,402,275...181,406,182 		JBrowse link
G Tpi1 triosephosphate isomerase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541 		JBrowse link
methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatd1 glutamine amidotransferase class 1 domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:196,504,533...196,512,561
Ensembl chr 1:196,504,833...196,512,551 		JBrowse link
G Hagh hydroxyacyl glutathione hydrolase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,874,883...13,889,527
Ensembl chr10:13,875,241...13,889,504 		JBrowse link
G Haghl hydroxyacylglutathione hydrolase-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,804,957...14,809,495
Ensembl chr10:14,804,997...14,807,665 		JBrowse link
G Pnkd PNKD metallo-beta-lactamase domain containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:75,868,620...75,937,126
Ensembl chr 9:75,867,468...75,937,124 		JBrowse link
methylglyoxal catabolic process to lactate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO
IEA
ISS		 (PMID:28993701)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:28993701 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
methylglyoxal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glo1 glyoxalase 1 IDA RGD PMID:10712823 PMID:8903102 PMID:8719777 RGD:1627641, RGD:1641959, RGD:1641958 NCBI chr20:8,663,617...8,681,661
Ensembl chr20:8,662,801...8,681,649 		JBrowse link
G Park7 Parkinsonism associated deglycase NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:22523093)
(PMID:27903648)		 UniProt
RGD		 PMID:22523093 PMID:27903648 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19584291)		 Ensembl
RGD		 PMID:19584291 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO (PMID:19584291) RGD PMID:19584291 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 involved_in ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 1:166,237,969...166,281,271
Ensembl chr 1:166,238,238...166,280,590 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO
IEA
IMP		 (PMID:19342457)
GO_REF:0000107		 RGD
Ensembl		 PMID:19342457 PMID:19342457 GO_REF:0000107, RGD:4891166 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
pentose-phosphate shunt, non-oxidative branch term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe ribulose-5-phosphate-3-epimerase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3079759 GO_REF:0000033, RGD:1641816 NCBI chr 9:68,191,027...68,211,295
Ensembl chr 9:68,191,292...68,211,591 		JBrowse link
G Rpia ribose 5-phosphate isomerase A involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3079759 GO_REF:0000033, RGD:1641816 NCBI chr 4:102,723,712...102,749,374
Ensembl chr 4:102,723,712...102,749,355 		JBrowse link
G Shpk sedoheptulokinase involved_in ISO (MGI:5428058|PMID:22682222)
(PMID:22682222)		 RGD PMID:22682222 MGI:5428058 NCBI chr10:57,817,551...57,841,981
Ensembl chr10:57,817,629...57,841,980 		JBrowse link
G Taldo1 transaldolase 1 involved_in IDA
ISO
IBA		 (PMID:18498245)
GO_REF:0000033		 RGD
GO_Central		 PMID:18498245 PMID:8477719 PMID:3079759 GO_REF:0000033, RGD:1641803, RGD:1641816 NCBI chr 1:196,493,634...196,503,965
Ensembl chr 1:196,493,589...196,503,974 		JBrowse link
G Tkt transketolase involved_in IDA
IEA
IBA		 GO_REF:0000107
GO_REF:0000033		 Ensembl
GO_Central
RGD		 PMID:16116031 PMID:3079759 GO_REF:0000033 GO_REF:0000107, RGD:1580394, RGD:1641816 NCBI chr16:5,723,764...5,748,702
Ensembl chr16:5,723,762...5,748,698 		JBrowse link
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:16527843) RGD PMID:16527843 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Dab2 DAB adaptor protein 2 IDA RGD PMID:17303656 RGD:7243836 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO (PMID:16981135) RGD PMID:16981135 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pdxkl1 pyridoxal kinase like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,162,934...10,192,572
Ensembl chr20:10,164,099...10,192,739 		JBrowse link
pyridoxal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in ISO (PMID:33318193) RGD PMID:33318193 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12824491)
GO_REF:0000033
(MGI:7489789|PMID:9601034)		 RGD
GO_Central		 PMID:9601034 PMID:12824491 GO_REF:0000033 MGI:7489789 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase involved_in IEA
ISO
ISS		 GO_REF:0000107
MGI:6367625 (PMID:24338473), (PMID:24338687), (PMID:25783190), (PMID:30327125)
MGI:6367625 (MGI:5545856|PMID:24338687), (MGI:5545857|PMID:24338473), (MGI:6695679|PMID:25783190), (PMID:30327125)
(PMID:14522954), (PMID:8132548)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 More... GO_REF:0000024 GO_REF:0000107 MGI:5545856 MGI:5545857 MGI:6695679 NCBI chr 7:110,472,515...110,477,963
Ensembl chr 7:110,472,515...110,477,963 		JBrowse link
pyridoxal phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO (MGI:76012|PMID:7550313) RGD PMID:7550313 MGI:76012 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446 		JBrowse link
G Pdxk pyridoxal kinase involved_in ISO (PMID:31935373), (PMID:33318193) RGD PMID:31935373 PMID:33318193 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in ISO (PMID:31935373) RGD PMID:31935373 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clcn2 chloride voltage-gated channel 2 involved_in ISO
ISS		 (PMID:29403011)
GO_REF:0000024		 RGD
UniProt		 PMID:29403011 GO_REF:0000024 NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
regulation of aldosterone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 acts_upstream_of_or_within ISO MGI:3050114 (PMID:17122062) RGD PMID:17122062 NCBI chr15:302,480...1,007,675
Ensembl chr15:302,214...1,001,198 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 involved_in ISO (PMID:29847635), (PMID:33375396) RGD PMID:29847635 PMID:33375396 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069 		JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852 		JBrowse link
G Akr1c1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:65,810,474...65,837,385
Ensembl chr17:65,810,475...65,837,326 		JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO (PMID:12610736) RGD PMID:12610736 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:11585737)		 Ensembl
RGD		 PMID:11585737 GO_REF:0000107 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,183,940...16,203,385
Ensembl chr 1:16,183,940...16,203,385 		JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA
ISS		 (PMID:11401432), (PMID:17951468), (PMID:24668807)
(PMID:15951442)
MGI:2177469 (PMID:25701869)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(MGI:3587559|PMID:15951442)		 RGD
GO_Central
Ensembl
UniProt		 PMID:11401432 PMID:15951442 PMID:17951468 PMID:24668807 PMID:25701869 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:3587559 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101 		JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1926923 (PMID:25701869)		 GO_Central
RGD		 PMID:25701869 GO_REF:0000033 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:15258110)
(MGI:5572883|PMID:15258110)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:15258110 GO_REF:0000024 GO_REF:0000107 MGI:5572883 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:12680773)		 GO_Central
RGD		 PMID:12680773 GO_REF:0000033 NCBI chr15:28,966,544...28,978,135
Ensembl chr15:28,966,553...28,978,127 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:11562477) RGD PMID:11562477 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO (PMID:19458327) RGD PMID:19458327 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (PMID:12807874) RGD PMID:12807874 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252 		JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in ISO
IBA		 (PMID:18039331)
GO_REF:0000033		 RGD
GO_Central		 PMID:18039331 GO_REF:0000033 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in IMP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:21785167 GO_REF:0000033, RGD:6893661 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Rps13 ribosomal protein S13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355 		JBrowse link
G Rps13l1 ribosomal protein S13 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,457,121...56,457,669
Ensembl chr 5:56,457,124...56,457,669 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO
IBA		 (PMID:18926804), (PMID:19102727)
GO_REF:0000033		 RGD
GO_Central		 PMID:18926804 PMID:19102727 GO_REF:0000033 NCBI chr 5:17,018,813...17,043,974
Ensembl chr 5:17,018,813...17,040,970 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      metabolic process 12309
        aldehyde metabolic process 84
          6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde 0
          acetaldehyde metabolic process + 2
          aldehyde biosynthetic process + 22
          aldehyde catabolic process + 16
          aldosterone metabolic process + 15
          chanoclavine-I aldehyde metabolic process + 0
          formaldehyde metabolic process + 6
          furaldehyde metabolic process 0
          glyceraldehyde-3-phosphate metabolic process + 12
          glyoxal metabolic process + 1
          glyoxylate metabolic process + 8
          hexadecanal metabolic process + 1
          methylglyoxal metabolic process + 8
          pyridoxal metabolic process + 1
          pyridoxal phosphate metabolic process + 5
          retinal metabolic process + 19
          vanillin metabolic process + 0
paths to the root