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ONTOLOGY REPORT - ANNOTATIONS


Term:amino sugar metabolic process
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Accession:GO:0006040 term browser browse the term
Definition:The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group.
Synonyms:exact_synonym: amino sugar metabolism;   aminosaccharide metabolic process;   aminosaccharide metabolism



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chitin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chi3l1 chitinase 3 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:45,641,802...45,649,787
Ensembl chr13:45,641,802...45,649,787
JBrowse link
G Chi3l3 chitinase 3-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,808,141...193,825,511
Ensembl chr 2:193,812,431...193,825,513
JBrowse link
G Chia chitinase, acidic involved_in IDA
IEA
IBA
ISO
ISS
GO_REF:0000117
PMID:21873635
(MGI:1931335|PMID:11085997)
(PMID:19435888)
GO_REF:0000024
UniProt
RGD
PMID:11085997 PMID:19435888 PMID:11085997 PMID:21873635 GO_REF:0000024 GO_REF:0000117 MGI:1931335, RGD:5000759, RGD:13792537 NCBI chr 2:193,614,374...193,656,532
Ensembl chr 2:193,614,114...193,656,533
JBrowse link
G Chit1 chitinase 1 involved_in ISO
IBA
(PMID:19725875)
PMID:21873635
RGD PMID:19725875 PMID:21873635 RGD:13792537 NCBI chr13:45,565,841...45,613,593
Ensembl chr13:45,593,845...45,613,592
JBrowse link
G Ctbs chitobiase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:2751306 PMID:21873635 RGD:2301430, RGD:13792537 NCBI chr 2:235,340,520...235,355,091
Ensembl chr 2:235,340,547...235,355,091
JBrowse link
G RGD1309110 similar to Hypothetical protein MGC58999 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,858,038...193,879,133
Ensembl chr 2:193,857,344...193,879,309
JBrowse link
fructosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in ISO
ISS
(PMID:17175089)
GO_REF:0000024
RGD
UniProt
PMID:17175089 GO_REF:0000024 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
fructosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn3k fructosamine 3 kinase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1889989|PMID:11016445)
RGD PMID:11016445 PMID:21873635 MGI:1889989, RGD:13792537 NCBI chr10:106,700,302...106,715,903
Ensembl chr10:106,700,670...106,715,895
JBrowse link
G Mdp1 magnesium-dependent phosphatase 1 IDA RGD PMID:16670083 RGD:2326017 NCBI chr15:29,148,994...29,153,091
Ensembl chr15:29,148,994...29,151,905
JBrowse link
glucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IDA RGD PMID:10898949 RGD:1625426 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471
JBrowse link
glucosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in ISO
IBA
(PMID:9438414)
PMID:21873635
RGD PMID:9438414 PMID:21873635 RGD:13792537 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713
JBrowse link
glucosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IDA RGD PMID:3792612 RGD:2311686 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase IDA
IMP
RGD PMID:12054585 PMID:18539296 RGD:9590171, RGD:9590185 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146
JBrowse link
N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:58,267,189...58,307,396
Ensembl chr 5:58,267,210...58,307,499
JBrowse link
G Nanp N-acetylneuraminic acid phosphatase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:139,826,549...139,841,655
Ensembl chr 3:139,826,549...139,841,648
JBrowse link
N-acetylglucosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd2 amidohydrolase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,187,579...13,196,148
Ensembl chr10:13,187,578...13,196,095
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713
JBrowse link
N-acetylglucosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst1 carbohydrate sulfotransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:78,552,059...78,574,736
Ensembl chr 3:78,548,525...78,574,883
JBrowse link
G Chst2 carbohydrate sulfotransferase 2 involved_in IBA
ISO
PMID:21873635
(PMID:9722682)
RGD PMID:9722682 PMID:21873635 RGD:13792537 NCBI chr 8:95,960,067...95,965,803
Ensembl chr 8:95,959,826...95,966,955
JBrowse link
G Chst3 carbohydrate sulfotransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,114,387...28,152,046
Ensembl chr20:28,114,404...28,121,807
JBrowse link
G Chst4 carbohydrate sulfotransferase 4 involved_in IBA
ISO
PMID:21873635
(PMID:10330415)
RGD PMID:10330415 PMID:21873635 RGD:13792537 NCBI chr19:37,993,471...38,002,123
Ensembl chr19:37,991,417...38,003,608
JBrowse link
G Chst5 carbohydrate sulfotransferase 5 involved_in ISO
IBA
(PMID:11352640)
(MGI:1934540|PMID:11278593), (MGI:3687902|PMID:12218059)
PMID:21873635
RGD PMID:11278593 PMID:11352640 PMID:12218059 PMID:21873635 MGI:1934540 MGI:3687902, RGD:13792537 NCBI chr19:39,860,729...39,881,019
Ensembl chr19:39,860,501...39,881,064
JBrowse link
G Chst7 carbohydrate sulfotransferase 7 involved_in ISO
IBA
(PMID:10913333)
PMID:21873635
RGD PMID:10913333 PMID:21873635 RGD:13792537 NCBI chr  X:2,396,260...2,432,828
Ensembl chr  X:2,393,874...2,432,840
JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 involved_in ISO (PMID:10318803)
(MGI:5882911|PMID:12562774)
RGD PMID:10318803 PMID:12562774 MGI:5882911 NCBI chr 2:203,922,217...203,946,940
Ensembl chr 2:203,922,187...203,943,653
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IDA RGD PMID:3792612 RGD:2311686 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739
JBrowse link
G Hexb hexosaminidase subunit beta IDA RGD PMID:1397486 RGD:1599434 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5613435|PMID:24619415)
RGD PMID:24619415 PMID:21873635 MGI:5613435, RGD:13792537 NCBI chr 7:111,708,353...111,761,825
Ensembl chr 7:111,675,730...111,762,026
JBrowse link
G Nagk N-acetylglucosamine kinase acts_upstream_of_or_within ISO (MGI:1859071|PMID:10824116) RGD PMID:10824116 MGI:1859071 NCBI chr 4:116,281,179...116,293,870
Ensembl chr 4:116,281,328...116,313,137
JBrowse link
G Oga O-GlcNAcase involved_in IMP
ISO
IEA
(PMID:11148210)
GO_REF:0000107
RGD
Ensembl
PMID:11148210 PMID:19139380 GO_REF:0000107, RGD:2305938 NCBI chr 1:244,598,285...244,633,835
Ensembl chr 1:244,598,292...244,634,359
JBrowse link
G Renbp renin binding protein acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
MGI:2386397 (MGI:1858659|PMID:10809771)
PMID:21873635
RGD PMID:10809771 PMID:11726282 PMID:21873635 MGI:1858659, RGD:5132613, RGD:13792537 NCBI chr  X:151,661,463...151,670,538
Ensembl chr  X:151,661,458...151,670,516
JBrowse link
N-acetylmannosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Renbp renin binding protein involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11726282 PMID:21873635 RGD:5132613, RGD:13792537 NCBI chr  X:151,661,463...151,670,538
Ensembl chr  X:151,661,458...151,670,516
JBrowse link
N-acetylneuraminate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase TAS RGD PMID:15330759 RGD:1358725 NCBI chr 5:58,267,189...58,307,396
Ensembl chr 5:58,267,210...58,307,499
JBrowse link
G Nanp N-acetylneuraminic acid phosphatase involved_in ISO
IDA
(PMID:16237198) RGD PMID:16237198 PMID:16237198 RGD:8554804 NCBI chr 3:139,826,549...139,841,655
Ensembl chr 3:139,826,549...139,841,648
JBrowse link
N-acetylneuraminate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd2 amidohydrolase domain containing 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:13,187,579...13,196,148
Ensembl chr10:13,187,578...13,196,095
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713
JBrowse link
G Nagk N-acetylglucosamine kinase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:116,281,179...116,293,870
Ensembl chr 4:116,281,328...116,313,137
JBrowse link
G Npl N-acetylneuraminate pyruvate lyase involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr13:65,655,099...65,697,464
Ensembl chr13:65,655,118...65,697,372
JBrowse link
G Renbp renin binding protein involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:151,661,463...151,670,538
Ensembl chr  X:151,661,458...151,670,516
JBrowse link
N-acetylneuraminate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmas cytidine monophosphate N-acetylneuraminic acid synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:175,718,808...175,737,128
Ensembl chr 4:175,718,808...175,737,125
JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 involved_in ISO (PMID:19820709) RGD PMID:19820709 NCBI chr 7:98,845,270...98,913,409
Ensembl chr 7:98,845,270...98,913,236
JBrowse link
G St6gal1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:23999306)
UniProt
RGD
PMID:23999306 GO_REF:0000024 NCBI chr11:77,526,837...77,653,474
Ensembl chr11:77,526,837...77,653,310
JBrowse link
UDP-N-acetylgalactosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 involved_in ISO (PMID:12678917), (PMID:14688233) RGD PMID:12678917 PMID:14688233 NCBI chr10:80,801,594...80,828,005
Ensembl chr10:80,802,941...80,857,700
JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319
JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 involved_in ISO (PMID:10318803)
(MGI:5882911|PMID:12562774)
RGD PMID:10318803 PMID:12562774 MGI:5882911 NCBI chr 2:203,922,217...203,946,940
Ensembl chr 2:203,922,187...203,943,653
JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739
JBrowse link
G Pgm3 phosphoglucomutase 3 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:3758645 (MGI:3723540|PMID:17548465)
GO_REF:0000041
(PMID:24589341)
RGD
UniProt
PMID:17548465 PMID:24589341 PMID:21873635 GO_REF:0000041 MGI:3723540, RGD:13792537 NCBI chr 8:87,517,931...87,536,034
Ensembl chr 8:87,517,701...87,536,022
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469
JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,172,335...8,180,505
Ensembl chr 3:8,173,216...8,180,443
JBrowse link
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:51667|PMID:1421759) RGD PMID:1421759 MGI:51667 NCBI chr10:33,563,642...33,582,718
Ensembl chr10:33,561,388...33,591,503
JBrowse link
UDP-N-acetylglucosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 acts_upstream_of_or_within ISO MGI:3579308 (MGI:56455|PMID:4031755), (MGI:65525|PMID:8137279) RGD PMID:4031755 PMID:8137279 MGI:56455 MGI:65525 NCBI chr10:80,801,594...80,828,005
Ensembl chr10:80,802,941...80,857,700
JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IDA RGD PMID:8280061 RGD:1624315 NCBI chr 8:44,664,055...44,671,102
Ensembl chr 8:44,664,071...44,671,087
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:10898949 PMID:21873635 RGD:1625426, RGD:13792537 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329
JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:58,267,189...58,307,396
Ensembl chr 5:58,267,210...58,307,499
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IDA RGD PMID:6303311 RGD:1625549 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      organic substance metabolic process 11326
        carbohydrate derivative metabolic process 1021
          amino sugar metabolic process 41
            N-acetylneuraminate metabolic process + 11
            UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
            UDP-N-acetylgalactosamine metabolic process + 3
            UDP-N-acetylglucosamine metabolic process + 12
            amino sugar biosynthetic process + 10
            amino sugar catabolic process + 14
            fructosamine metabolic process + 3
            glucosamine-containing compound metabolic process + 26
            lipid X metabolic process 0
            mannosamine metabolic process + 1
paths to the root