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ONTOLOGY REPORT - ANNOTATIONS


Term:aminoglycan catabolic process
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Accession:GO:0006026 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.
Synonyms:exact_synonym: aminoglycan breakdown;   aminoglycan catabolism;   aminoglycan degradation



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chitin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chi3l1 chitinase 3 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:45,641,802...45,649,787
Ensembl chr13:45,641,802...45,649,787
JBrowse link
G Chi3l3 chitinase 3-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,808,141...193,825,511
Ensembl chr 2:193,812,431...193,825,513
JBrowse link
G Chia chitinase, acidic involved_in IDA
IEA
IBA
ISO
ISS
GO_REF:0000117
PMID:21873635
(MGI:1931335|PMID:11085997)
(PMID:19435888)
GO_REF:0000024
UniProt
RGD
PMID:11085997 PMID:19435888 PMID:11085997 PMID:21873635 GO_REF:0000024 GO_REF:0000117 MGI:1931335, RGD:5000759, RGD:13792537 NCBI chr 2:193,614,374...193,656,532
Ensembl chr 2:193,614,114...193,656,533
JBrowse link
G Chit1 chitinase 1 involved_in ISO
IBA
(PMID:19725875)
PMID:21873635
RGD PMID:19725875 PMID:21873635 RGD:13792537 NCBI chr13:45,565,841...45,613,593
Ensembl chr13:45,593,845...45,613,592
JBrowse link
G Ctbs chitobiase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:2751306 PMID:21873635 RGD:2301430, RGD:13792537 NCBI chr 2:235,340,520...235,355,091
Ensembl chr 2:235,340,547...235,355,091
JBrowse link
G RGD1309110 similar to Hypothetical protein MGC58999 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,858,038...193,879,133
Ensembl chr 2:193,857,344...193,879,309
JBrowse link
chondroitin sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gusb glucuronidase, beta involved_in ISO MGI:1856041 (MGI:7281718|PMID:23897660) RGD PMID:23897660 MGI:7281718 NCBI chr12:26,701,191...26,714,718
Ensembl chr12:26,697,951...26,726,905
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO
IEA
MGI:2429701 (MGI:5428797|PMID:22451654)
GO_REF:0000107
RGD
Ensembl
PMID:22451654 GO_REF:0000107 MGI:5428797 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISO MGI:2658730 (MGI:5428797|PMID:22451654) RGD PMID:22451654 MGI:5428797 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal4 hyaluronidase 4 acts_upstream_of_or_within ISO (MGI:5490850|PMID:23086929) RGD PMID:23086929 MGI:5490850 NCBI chr 4:53,256,179...53,274,819
Ensembl chr 4:53,256,179...53,274,819
JBrowse link
dermatan sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsb arylsulfatase B involved_in ISO MGI:3800577 (MGI:5608575|PMID:24240681) RGD PMID:24240681 MGI:5608575 NCBI chr 2:25,002,210...25,162,675
Ensembl chr 2:25,002,346...25,162,671
JBrowse link
G Hexa hexosaminidase subunit alpha involved_in ISO MGI:96074 (MGI:3722584|PMID:11707436) RGD PMID:11707436 MGI:3722584 NCBI chr 8:59,936,526...59,961,654
Ensembl chr 8:59,936,660...59,962,013
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO
IEA
MGI:96073 (MGI:3722584|PMID:11707436)
GO_REF:0000107
RGD
Ensembl
PMID:11707436 GO_REF:0000107 MGI:3722584 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO MGI:5439833 (MGI:7310027|PMID:30064964) RGD PMID:30064964 MGI:7310027 NCBI chr  X:149,025,977...149,046,639
Ensembl chr  X:149,025,976...149,046,663
JBrowse link
G Idua alpha-L-iduronidase involved_in
acts_upstream_of_or_within
ISO (PMID:24036510)
MGI:2176236|MGI:4415188 (MGI:4414887|PMID:19751987), (MGI:7310026|PMID:25854773)
MGI:2176236|MGI:4415188 (MGI:4397742|PMID:19834056), (MGI:4414887|PMID:19751987)
RGD PMID:19751987 PMID:19834056 PMID:24036510 PMID:25854773 MGI:4397742 MGI:4414887 MGI:7310026 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
glycosaminoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hyal2 hyaluronidase 2 involved_in ISO
ISS
(PMID:9712871)
GO_REF:0000024
RGD
UniProt
PMID:9712871 GO_REF:0000024 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal4 hyaluronidase 4 TAS RGD PMID:10989127 RGD:1331360 NCBI chr 4:53,256,179...53,274,819
Ensembl chr 4:53,256,179...53,274,819
JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO (PMID:28593992) RGD PMID:28593992 NCBI chr  X:149,025,977...149,046,639
Ensembl chr  X:149,025,976...149,046,663
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within IDA
ISO
MGI:2176236|MGI:2651471|MGI:4415188 (MGI:3697540|PMID:16979922), (MGI:4397742|PMID:19834056), (MGI:4414887|PMID:19751987), (MGI:5295514|PMID:21873421), (MGI:5448924|PMID:22580166) RGD PMID:16979922 PMID:19751987 PMID:19834056 PMID:21873421 PMID:22580166 More... MGI:3697540 MGI:4397742 MGI:4414887 MGI:5295514 MGI:5448924, RGD:1599427 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 acts_upstream_of_or_within ISO (MGI:2135409|PMID:11278811) RGD PMID:11278811 MGI:2135409 NCBI chr 1:164,962,872...164,976,309
Ensembl chr 1:164,962,872...164,976,309
JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase involved_in ISO (PMID:15146460), (PMID:7493035) RGD PMID:7493035 PMID:15146460 NCBI chr10:104,596,810...104,613,510
Ensembl chr10:104,598,112...104,613,486
JBrowse link
heparin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236|MGI:4415188 (MGI:4397742|PMID:19834056), (MGI:4414887|PMID:19751987), (MGI:5295514|PMID:21873421)
(PMID:21873421)
RGD PMID:19751987 PMID:19834056 PMID:21873421 MGI:4397742 MGI:4414887 MGI:5295514 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
hyaluronan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule (Indian blood group) involved_in ISO (PMID:17170110)
(MGI:7264268|PMID:26528478)
RGD PMID:17170110 PMID:26528478 MGI:7264268 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620
JBrowse link
G Cemip cell migration inducing hyaluronidase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545862|PMID:24251095)
(PMID:23509262)
UniProt
RGD
PMID:23509262 PMID:24251095 GO_REF:0000024 MGI:5545862 NCBI chr 1:137,906,921...138,062,430
Ensembl chr 1:137,908,920...138,062,415
JBrowse link
G Cemip2 cell migration inducing hyaluronidase 2 involved_in ISO (PMID:28246172) RGD PMID:28246172 NCBI chr 1:219,330,295...219,407,760
Ensembl chr 1:219,337,985...219,407,760
JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:19577615) RGD PMID:19577615 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Gusb glucuronidase, beta involved_in ISO (MGI:4442520|PMID:20385825) RGD PMID:20385825 MGI:4442520 NCBI chr12:26,701,191...26,714,718
Ensembl chr12:26,697,951...26,726,905
JBrowse link
G Hexa hexosaminidase subunit alpha involved_in ISO MGI:2429698 (MGI:5428797|PMID:22451654) RGD PMID:22451654 MGI:5428797 NCBI chr 8:59,936,526...59,961,654
Ensembl chr 8:59,936,660...59,962,013
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO
IEA
MGI:2429701 (MGI:5428797|PMID:22451654)
GO_REF:0000107
RGD
Ensembl
PMID:22451654 GO_REF:0000107 MGI:5428797 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
JBrowse link
G Hmmr hyaluronan-mediated motility receptor involved_in ISO (MGI:7264268|PMID:26528478) RGD PMID:26528478 MGI:7264268 NCBI chr10:25,132,933...25,163,029
Ensembl chr10:25,132,977...25,163,060
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISO
IBA
(PMID:12084718)
PMID:21873635
MGI:2658730 (MGI:5428797|PMID:22451654), (MGI:5828047|PMID:26887442)
(PMID:11296287), (PMID:17170110), (PMID:20473947), (PMID:21695196), (PMID:21699545), (PMID:21829529)
RGD PMID:11296287 PMID:12084718 PMID:17170110 PMID:20473947 PMID:21695196 More... MGI:5428797 MGI:5828047, RGD:13792537 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal2 hyaluronidase 2 involved_in IDA
IBA
IEA
ISO
PMID:19635555
PMID:21873635
GO_REF:0000107
MGI:3836764 (MGI:5469812|PMID:23172227), (MGI:5828047|PMID:26887442)
(PMID:17170110), (PMID:19443707), (PMID:20554532), (PMID:21699545)
Ensembl
RGD
PMID:17170110 PMID:19443707 PMID:20554532 PMID:21699545 PMID:23172227 More... GO_REF:0000107 MGI:5469812 MGI:5828047, RGD:8553259, RGD:13792537 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000002
(MGI:4834982|PMID:20586096)
(PMID:21699545)
(PMID:12084718)
UniProt
InterPro
RGD
PMID:12084718 PMID:20586096 PMID:21699545 PMID:21873635 GO_REF:0000002 GO_REF:0000024 MGI:4834982, RGD:13792537 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647
JBrowse link
G Hyal4 hyaluronidase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:53,256,179...53,274,819
Ensembl chr 4:53,256,179...53,274,819
JBrowse link
G Hyal5 hyaluronoglucosaminidase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:53,341,105...53,412,280
Ensembl chr 4:53,343,475...53,370,785
JBrowse link
G Hyal6 hyaluronoglucosaminidase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:53,238,118...53,250,783
Ensembl chr 4:53,237,983...53,250,783
JBrowse link
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 involved_in ISO (MGI:2135409|PMID:11278811) RGD PMID:11278811 MGI:2135409 NCBI chr 1:164,962,872...164,976,309
Ensembl chr 1:164,962,872...164,976,309
JBrowse link
G Spam1 sperm adhesion molecule 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:53,302,745...53,312,913
Ensembl chr 4:53,302,745...53,312,908
JBrowse link
G Stab2 stabilin 2 involved_in ISO MGI:5318244 (MGI:5315050|PMID:22371575) RGD PMID:22371575 MGI:5315050 NCBI chr 7:21,249,426...21,433,031
Ensembl chr 7:21,249,391...21,434,042
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
ISS
(PMID:17324121)
GO_REF:0000024
RGD
UniProt
PMID:17324121 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
keratan sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase IDA RGD PMID:3161730 RGD:1600571 NCBI chr 7:56,889,139...56,923,170
Ensembl chr 7:56,889,232...56,923,151
JBrowse link
peptidoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyg1 lysozyme G1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:40,171,123...40,182,869
Ensembl chr 9:40,171,123...40,182,869
JBrowse link
G Lyg2 lysozyme G2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:40,141,144...40,150,821
Ensembl chr 9:40,141,381...40,150,821
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:78,531,815...78,537,001
Ensembl chr 1:78,531,815...78,537,001
JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:11,418,674...11,432,162
Ensembl chr 7:11,418,880...11,427,773
JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:177,479,693...177,490,867
Ensembl chr 2:177,477,407...177,490,736
JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:176,202,654...176,322,859
Ensembl chr 2:176,218,519...176,242,251
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19876
    metabolic process 12192
      organic substance metabolic process 11723
        macromolecule metabolic process 10080
          aminoglycan metabolic process 122
            aminoglycan catabolic process 35
              chitin catabolic process + 6
              glycosaminoglycan catabolic process + 29
              poly-N-acetyllactosamine catabolic process 0
paths to the root