Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:aminoglycan metabolic process
go back to main search page
Accession:GO:0006022 term browser browse the term
Definition:The chemical reactions and pathways involving aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.
Synonyms:exact_synonym: aminoglycan metabolism


show annotations for term's descendants       view all columns           Sort by:
 
catabolism by host of symbiont cell wall chitin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chia chitinase, acidic JBrowse link 2 208,750,348 208,797,388 RGD:1600115
RGD:1624291
chitin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chi3l1 chitinase 3 like 1 JBrowse link 13 51,022,844 51,030,797 RGD:13792537
G Chi3l3 chitinase 3-like 3 JBrowse link 2 208,899,871 208,936,858 RGD:13792537
G Chia chitinase, acidic JBrowse link 2 208,750,348 208,797,388 RGD:5000759
RGD:13792537
RGD:1624291
RGD:1600115
G Chit1 chitinase 1 JBrowse link 13 50,947,020 50,994,644 RGD:1624291
RGD:13792537
G Ctbs chitobiase JBrowse link 2 252,305,874 252,320,387 RGD:2301430
RGD:13792537
G RGD1309110 similar to Hypothetical protein MGC58999 JBrowse link 2 208,982,251 209,004,270 RGD:13792537
chitin metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chia chitinase, acidic JBrowse link 2 208,750,348 208,797,388 RGD:1600115
chondroitin sulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chpf chondroitin polymerizing factor JBrowse link 9 82,669,199 82,673,898 RGD:1624291
G Chst11 carbohydrate sulfotransferase 11 JBrowse link 7 26,641,856 26,890,503 RGD:1624291
G Chst12 carbohydrate sulfotransferase 12 JBrowse link 12 16,199,975 16,218,404 RGD:1624291
G Chst13 carbohydrate sulfotransferase 13 JBrowse link 4 122,223,846 122,244,848 RGD:1624291
G Chst3 carbohydrate sulfotransferase 3 JBrowse link 20 29,731,828 29,768,656 RGD:1600115
RGD:13792537
RGD:1624291
G Chst7 carbohydrate sulfotransferase 7 JBrowse link X 2,623,018 2,657,155 RGD:1624291
RGD:13792537
G Chsy1 chondroitin sulfate synthase 1 JBrowse link 1 127,010,587 127,071,570 RGD:1624291
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
G Slc35d1 solute carrier family 35 member D1 JBrowse link 5 122,700,396 122,746,815 RGD:1624291
G Ugdh UDP-glucose 6-dehydrogenase JBrowse link 14 44,479,614 44,502,845 RGD:1600115
RGD:1624291
G Xylt1 xylosyltransferase 1 JBrowse link 1 186,939,698 187,264,758 RGD:1600115
RGD:1624291
G Xylt2 xylosyltransferase 2 JBrowse link 10 82,386,003 82,399,485 RGD:1600115
chondroitin sulfate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hyal4 hyaluronidase 4 JBrowse link 4 52,147,641 52,166,276 RGD:1624291
chondroitin sulfate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 JBrowse link 17 90,191,119 90,218,013 RGD:1624291
G Chst11 carbohydrate sulfotransferase 11 JBrowse link 7 26,641,856 26,890,503 RGD:1624291
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
G Dse dermatan sulfate epimerase JBrowse link 20 27,703,738 27,784,982 RGD:13792537
G Dsel dermatan sulfate epimerase-like JBrowse link 13 1,942,384 1,948,563 RGD:1624291
RGD:13792537
dermatan sulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chst12 carbohydrate sulfotransferase 12 JBrowse link 12 16,199,975 16,218,404 RGD:1624291
G Chst14 carbohydrate sulfotransferase 14 JBrowse link 3 110,734,105 110,736,162 RGD:1624291
RGD:1600115
G Dse dermatan sulfate epimerase JBrowse link 20 27,703,738 27,784,982 RGD:1624291
dermatan sulfate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idua alpha-L-iduronidase JBrowse link 14 2,041,828 2,056,762 RGD:1624291
dermatan sulfate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dse dermatan sulfate epimerase JBrowse link 20 27,703,738 27,784,982 RGD:13792537
G Dsel dermatan sulfate epimerase-like JBrowse link 13 1,942,384 1,948,563 RGD:1624291
RGD:13792537
glycosaminoglycan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B3galt6 Beta-1,3-galactosyltransferase 6 JBrowse link 5 173,423,475 173,425,611 RGD:1624291
RGD:13792537
G B3gat3 beta-1,3-glucuronyltransferase 3 JBrowse link 1 225,120,061 225,126,579 RGD:1624291
G B4galt7 beta-1,4-galactosyltransferase 7 JBrowse link 17 9,549,605 9,558,672 RGD:1624291
RGD:1600115
G Ext1 exostosin glycosyltransferase 1 JBrowse link 7 92,605,008 92,881,392 RGD:1624291
G Ext2 exostosin glycosyltransferase 2 JBrowse link 3 82,602,784 82,734,557 RGD:1624291
G Hexa hexosaminidase subunit alpha JBrowse link 8 64,325,435 64,350,775 RGD:1624291
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:1581762
G Pxylp1 2-phosphoxylose phosphatase 1 JBrowse link 8 104,724,728 104,790,639 RGD:1624291
RGD:1600115
G Ugdh UDP-glucose 6-dehydrogenase JBrowse link 14 44,479,614 44,502,845 RGD:13792537
G Xylt1 xylosyltransferase 1 JBrowse link 1 186,939,698 187,264,758 RGD:1600115
G Xylt2 xylosyltransferase 2 JBrowse link 10 82,386,003 82,399,485 RGD:1624291
glycosaminoglycan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07030903.1 RGD:1600115
G Hyal2 hyaluronidase 2 JBrowse link 8 116,324,062 116,328,978 RGD:1624291
RGD:1600115
G Hyal4 hyaluronidase 4 JBrowse link 4 52,147,641 52,166,276 RGD:1331360
G Ids iduronate 2-sulfatase JBrowse link 8 69,447,971 69,466,708 RGD:1624291
G Idua alpha-L-iduronidase JBrowse link 14 2,041,828 2,056,762 RGD:1599427
RGD:1624291
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 JBrowse link 1 175,663,266 175,676,699 RGD:1624291
G Sgsh N-sulfoglucosamine sulfohydrolase JBrowse link 10 108,469,312 108,479,094 RGD:1624291
glycosaminoglycan metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln6 CLN6, transmembrane ER protein JBrowse link 8 67,733,215 67,748,170 RGD:1624291
G Foxc1 forkhead box C1 JBrowse link 17 33,947,501 33,951,484 RGD:1624291
G Hexa hexosaminidase subunit alpha JBrowse link 8 64,325,435 64,350,775 RGD:1624291
G Hexb hexosaminidase subunit beta JBrowse link 2 27,983,925 28,003,260 RGD:1624291
RGD:1600115
G Ndst1 N-deacetylase and N-sulfotransferase 1 JBrowse link 18 55,951,497 56,014,107 RGD:1624291
heparin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Angpt1 angiopoietin 1 JBrowse link 7 81,338,327 81,592,459 RGD:1600115
RGD:1624291
G Glce glucuronic acid epimerase JBrowse link 8 67,006,588 67,073,723 RGD:1624291
G Ndst1 N-deacetylase and N-sulfotransferase 1 JBrowse link 18 55,951,497 56,014,107 RGD:1600115
G Slc10a7 solute carrier family 10, member 7 JBrowse link 19 32,857,984 33,081,359 RGD:1624291
G Xylt2 xylosyltransferase 2 JBrowse link 10 82,386,003 82,399,485 RGD:1624291
RGD:1600115
heparin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idua alpha-L-iduronidase JBrowse link 14 2,041,828 2,056,762 RGD:1624291
heparin metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 2 250,467,428 250,600,517 RGD:1624291
hyaluronan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnd3 cyclin D3 JBrowse link 9 15,404,816 15,410,905 RGD:2316018
G Has1 hyaluronan synthase 1 JBrowse link 1 59,720,612 59,732,409 RGD:1624291
RGD:13792537
G Has2 hyaluronan synthase 2 JBrowse link 7 96,438,046 96,464,049 RGD:1600115
RGD:13792537
RGD:1624291
RGD:8553259
G Has3 hyaluronan synthase 3 JBrowse link 19 39,063,298 39,077,745 RGD:1624291
RGD:13792537
G Hyal1 hyaluronidase 1 JBrowse link 8 116,332,834 116,337,522 RGD:1600115
RGD:1624291
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:1600115
RGD:1624291
hyaluronan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:1600115
RGD:1624291
G Cemip cell migration inducing hyaluronidase JBrowse link 1 146,069,774 146,226,320 RGD:1624291
RGD:1600115
G Cemip2 cell migration inducing hyaluronidase 2 JBrowse link 1 239,397,322 239,474,931 RGD:1624291
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:1624291
G Hyal1 hyaluronidase 1 JBrowse link 8 116,332,834 116,337,522 RGD:1600115
RGD:1624291
G Hyal2 hyaluronidase 2 JBrowse link 8 116,324,062 116,328,978 RGD:8553259
RGD:1624291
RGD:1600115
G Hyal3 hyaluronidase 3 JBrowse link 8 116,336,512 116,342,147 RGD:1600115
RGD:1624291
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:1624291
RGD:1600115
hyaluronan metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028488.1 RGD:1600115
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:7243103
G Has2 hyaluronan synthase 2 JBrowse link 7 96,438,046 96,464,049 RGD:1624291
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:7243103
G Hyal1 hyaluronidase 1 JBrowse link 8 116,332,834 116,337,522 RGD:1624291
RGD:1600115
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:5013835
G Itih1 inter-alpha trypsin inhibitor, heavy chain 1 JBrowse link 16 7,012,376 7,026,542 RGD:1600115
G Itih2 inter-alpha-trypsin inhibitor heavy chain 2 JBrowse link 17 72,160,734 72,197,248 RGD:1600115
G Itih3 inter-alpha trypsin inhibitor, heavy chain 3 JBrowse link 16 6,983,779 7,007,288 RGD:1600115
G Itih4 inter-alpha-trypsin inhibitor heavy chain 4 JBrowse link 16 6,970,367 6,985,538 RGD:1600115
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:7243103
G Mki67 marker of proliferation Ki-67 JBrowse link 1 207,993,895 208,020,454 RGD:7243103
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase JBrowse link 20 8,165,423 8,169,557 RGD:7243103
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:7243103
keratan sulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chst4 carbohydrate sulfotransferase 4 JBrowse link 19 41,630,060 41,642,373 RGD:13792537
G Chst5 carbohydrate sulfotransferase 5 JBrowse link 19 44,115,065 44,136,092 RGD:1624291
RGD:13792537
keratan sulfate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gns glucosamine (N-acetyl)-6-sulfatase JBrowse link 7 63,467,027 63,501,054 RGD:1600571
keratan sulfate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chst1 carbohydrate sulfotransferase 1 JBrowse link 3 81,441,785 81,512,829 RGD:1624291
RGD:13792537
negative regulation of hyaluronan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 JBrowse link 1 100,896,582 100,926,443 RGD:1624291
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
RGD:1624291
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link 19 38,237,963 38,321,572 RGD:1624291
RGD:1600115
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:1624291
RGD:1600115
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bgn biglycan JBrowse link X 157,319,042 157,331,204 RGD:1624291
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:1624291
G Egflam EGF-like, fibronectin type III and laminin G domains JBrowse link 2 56,503,002 56,681,334 RGD:1624291
RGD:1600115
G Mamdc2 MAM domain containing 2 JBrowse link 1 241,071,110 241,223,798 RGD:1624291
G Ndnf neuron-derived neurotrophic factor JBrowse link 4 96,528,830 96,565,780 RGD:1624291
G Prss34 protease, serine, 34 JBrowse link 10 14,656,812 14,658,569 RGD:1600115
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 JBrowse link 20 29,654,926 29,679,927 RGD:1624291
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 JBrowse link 16 28,372,067 28,716,762 RGD:1624291
peptidoglycan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07067422.1 RGD:1600115
G LOC100910070 lysozyme g-like protein 1-like JBrowse link 9 44,605,306 44,611,810 RGD:1600115
G LOC103693222 lysozyme g-like protein 2 JBrowse link 9 44,574,626 44,590,028 RGD:1600115
G Lyg1 lysozyme G1 JBrowse link 9 44,527,596 44,539,320 RGD:1600115
G Lyg2 lysozyme G2 JBrowse link 9 44,497,508 44,509,921 RGD:1600115
G Pglyrp1 peptidoglycan recognition protein 1 JBrowse link 1 79,790,879 79,796,064 RGD:1600115
G Pglyrp2 peptidoglycan recognition protein 2 JBrowse link 7 14,426,481 14,435,987 RGD:1600115
G Pglyrp3 peptidoglycan recognition protein 3 JBrowse link 2 191,903,626 192,264,872 RGD:1600115
G Pglyrp3b peptidoglycan recognition protein 3b JBrowse link 2 191,900,147 191,916,863 RGD:1600115
G Pglyrp4 peptidoglycan recognition protein 4 JBrowse link 2 190,125,655 190,204,230 RGD:1600115
poly-N-acetyllactosamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B3gnt2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 JBrowse link 14 107,592,336 107,617,189 RGD:1624291
RGD:13792537
G B3gnt3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 JBrowse link 16 20,123,948 20,133,482 RGD:1624291
RGD:13792537
G B3gnt4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 JBrowse link 12 38,503,361 38,506,793 RGD:1624291
RGD:13792537
G B3gnt5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 JBrowse link 11 84,919,055 84,931,160 RGD:13792537
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 JBrowse link 1 163,143,027 163,149,496 RGD:13792537
G B3gnt7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 JBrowse link 9 93,326,283 93,330,234 RGD:13792537
G B3gnt8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 JBrowse link 1 82,419,264 82,422,852 RGD:1624291
RGD:13792537
G B3gnt9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 JBrowse link 19 37,208,061 37,212,400 RGD:13792537
G B4galt5 beta-1,4-galactosyltransferase 5 JBrowse link 3 164,039,731 164,055,561 RGD:1624291
G B4gat1 beta-1,4-glucuronyltransferase 1 JBrowse link 1 220,322,854 220,325,076 RGD:1624291
positive regulation of hyaluronan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:1624291
G Has2 hyaluronan synthase 2 JBrowse link 7 96,438,046 96,464,049 RGD:9588629
RGD:9588632
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:1600115
RGD:1624291
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1600115
RGD:1624291
G Ptger4 prostaglandin E receptor 4 JBrowse link 2 54,951,625 54,966,470 RGD:9588632
regulation of hyaluronan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link 19 38,237,963 38,321,572 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19336
    metabolic process 11555
      organic substance metabolic process 10949
        macromolecule metabolic process 9418
          aminoglycan metabolic process 108
            aminoglycan biosynthetic process + 52
            aminoglycan catabolic process + 31
            chitin metabolic process + 6
            glycosaminoglycan metabolic process + 92
            poly-N-acetyllactosamine metabolic process + 10
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.