Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:5-phosphoribose 1-diphosphate biosynthetic process
go back to main search page
Accession:GO:0006015 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.
Synonyms:exact_synonym: 5-phosphoribose 1-diphosphate anabolism;   5-phosphoribose 1-diphosphate biosynthesis;   5-phosphoribose 1-diphosphate formation;   5-phosphoribose 1-diphosphate synthesis;   5-phosphoribosyl-1-pyrophosphate biosynthesis;   5-phosphoribosyl-1-pyrophosphate biosynthetic process;   PRPP biosynthetic process
 xref: MetaCyc:PWY0-661


show annotations for term's descendants           Sort by:
5-phosphoribose 1-diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC314140 ribose-phosphate pyrophosphokinase I -like involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 6:74,755,331...74,764,179
Ensembl chr 6:74,755,310...74,766,465 		JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 involved_in IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:5662317|PMID:26175007)
GO_REF:0000041		 RGD
UniProt		 PMID:26175007 PMID:9366267 PMID:21873635 GO_REF:0000041 MGI:5662317, RGD:5134981, RGD:13792537 NCBI chr  X:104,132,139...104,154,191
Ensembl chr  X:104,132,141...104,154,187 		JBrowse link
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 6:51,684,960...51,686,650
Ensembl chr 6:51,684,948...51,687,291 		JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 involved_in IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:5602900|PMID:24855946), (MGI:5662317|PMID:26175007)
GO_REF:0000041		 RGD
UniProt		 PMID:24855946 PMID:26175007 PMID:9366267 PMID:21873635 GO_REF:0000041 MGI:5602900 MGI:5662317, RGD:5134981, RGD:13792537 NCBI chr  X:26,975,915...27,013,184
Ensembl chr  X:26,976,061...27,013,181 		JBrowse link
G Prpsap1 phosphoribosyl pyrophosphate synthetase-associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,701,094...101,750,753
Ensembl chr10:101,701,096...101,750,751 		JBrowse link
G Prpsap2 phosphoribosyl pyrophosphate synthetase-associated protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,410,817...46,445,929
Ensembl chr10:46,410,835...46,445,849 		JBrowse link
G Pygl glycogen phosphorylase L IMP RGD PMID:15571236 RGD:1599376 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19748
    metabolic process 12047
      biosynthetic process 6263
        organic substance biosynthetic process 6171
          organophosphate biosynthetic process 544
            ribose phosphate biosynthetic process 211
              5-phosphoribose 1-diphosphate biosynthetic process 7
Path 2
Term Annotations click to browse term
  biological_process 19748
    metabolic process 12047
      cellular metabolic process 9535
        phosphorus metabolic process 2856
          organophosphate metabolic process 928
            ribose phosphate metabolic process 369
              ribose phosphate biosynthetic process 211
                5-phosphoribose 1-diphosphate biosynthetic process 7
paths to the root